Cp4.1LG05g10700 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g10700
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	upstream activation factor subunit UAF30-like
Location	Cp4.1LG05: 7123406 .. 7128250 (+)
RNA-Seq Expression	Cp4.1LG05g10700
Synteny	Cp4.1LG05g10700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCTTCCTCCCCCAATCTCCCATCTGTTTCTTCGCCCCAAGTCTTTTTCCTCTTGCGTTGTAACCAAAAGCCACACCCAGCGGAGGCTCTGCCCTCATCTCCGCCACCACCACCACCACCTCTTCCTCCTCCTCCATTTTTTCTCTTTCAATCTCTGCCTTTTTCCTCTTATTCCATTCAGATTGTGGCTTCCAACAATGGTTTCCGACTCGGAGCTCATCAGCCGGCTCCGGGAGTTGCTTCGGAATTCCGACCTCAATACCACTACCACTGCTATCGTCCGCCGGAAGCTCGAGGAGGATTTTTCCATTGATTTGTCCGATAAGAAGAAGTTTATTAGGGAACAGGTCGACTTGTTCCTCCACACTGAGCACCAGAGACTTGATGAAGAAGATGGCGGCGACTGCGACGAAGTCGACCAGGAGGATGGAGATGATAATTCGAAGATGGAAGAGGAGGATGGAGATAGTGGAGACGGAGATAACTACGACGACGATGACAGAAAGAGTAAAACGGGGTGAGTGTGATTGATGGAATTTTGCGATTGTAAGTACAACGGCTTTCAGTTCAGTGTTGGATTTTGTTTGGTAAATAACTCTAAAGTACGGTTTCTCTCTTGGGAGTAATGTGTAAACACCATGAATTGATTCCTTTTCATACTGAAACTAGTGGCAAGATTGTGGAATTCAACACCGGAGCTTATACCCGCAATTGTGATTACGCCTTCTTGCATATTCGCATTTATAATTCCTAACCACTATAGAACCATTGTAAATTGTACTTTCTTTTCGTTCTCTGTCGATTCTTTACTTTAATGTTAGAATTTGGTTTTTTTCTTCTACTCGACGAATTCAGCATTCTCAGTTTAACAACAAAAGAATCACGCATTATTTAAGAACAAGTGAGTTTTTTGGGAGAAAAAACTTGAAATGTTTAAGTACCGCAGAGCTTCATAGGTGCCCTTTTCATTGACATGTGCAAGTATTATTCAATTCTTGATATTAATTCTTGTTTGTTGTTGTAATTCTCTGATTAGATGGTGTTATTAGCTTTAGCTTCTGTTTTCTTAGTATTCGGCTTTCTAGTTCCATTCTAAAGGGGGTTTTAAGTGGGAACTTTTCATATATAAATGAAATGTTTATATGTTTTGTAAGAGAATAAGTAGACCATCGAAATTTCTATTTGTGACCATCTTTGATGATTAAATTATTGCTCTATGTAATGCAGTTCTAACGAGCTTGGTAAAGAGGTGAAGAAAAGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCCCCACAACTACAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTACATCTTGAAAGTAATTTTTGACCTTTTTTTTCTCAATATACCATTGACGATCATGTCATTTCCTTCTAATACAGTGATTGCTATCATTGTTTCAGGTTGTGAAGCAACTATGGAACCACATTAGAGAGAAGAATTTGCAAGACCCCAGTAATAGGAGAAATATTCTCTGTGATGAACCATTTAAAGCACTCTTTGGTGTTAATTCCATCGACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGGCGTTGGAATCAAATGACGGTGTGTTTTTATAGCTTCACTTTTGTTGCTAATATTATGCTACTGTTTCCTCAGATGTTTGAACTTACCGTTGCTTTTAATTGTTAACTAAAGCCATTTCGTTAAACTAATTCTTGATGTCAATCTGGCTTCTATGGAACCTTAAGTGCTATTTCAATTTTGATTCTTGGATTTTCTTATATATATATTAATCCCAATGGGTACTAGGACGCTTATTTTATATGAAATAAAGTTTTTGTCTGCATGCATCTTACTTAAGGATAATACTTGCCACTGCAAAACCCTGAACTTTATTCTGATGAAACTGAGCTACAAACCTTTCTTTTACCTGGATACAGTTACTCCAGCCAAATCAAGTCAGAAGGAAAAGCAGCAAAAGGAGAAGCCACAAAAGAAGAAGCGGCGGAAGCAAGGAAAAGAAGGTAGATAACAAAATTAGTTATTTTTATTTGAAATTTTATGACTGTTCATGGCAAGAGACCTCCAGTAGGAATAACTGTAACTAAGTACCCAAAAATAAGATTCTAAATCATTATTCAAATGCACCTCATTAAAATTTAGTGATGTTAGTAGGATAAAGTCTGAATTGTTCAGATAATACCAAGAAGCCGCATAAAGTTTAATCAATTAGGATCTCTCTTCCTTTATCTTTGAAGATCCATTGTTTTCTTTGGAATCATATATCCCAAAATGTTGCTCATTAATCCATAATAATTTAGCTCCAATATATCCCGTTGTTTATTTACAAGAGGGATGTATAATCCATAATAATTTAGCTCCAATATATCCCATTGTTTACAAGAGGGATGTATAATCCATGATGTTTACAAAAGACCTTCCCAATTTGCATTGAGGGAGGTATAACTATAGGAAGTAAAAATATTAGACAGCTTACACCAAGATATAGCTTGGTAAACAACATTTAGATGACATGATTAGAAAAAGAAGTTGTGGCATCCAAATTCATGTAGATGACATGATTAGATCTTGACCTCATCATCAATTGGGAAAGGACGTTCTCCTTTTGTAAATTATCCAACATAATTGTTTCCGAATGAAATATAAAAGATGTAAACTTTACATTATACTTTTTCCAGTTTACAGCTAAATGAAGGTTCTACTAATATCTAATAAACGTTCTTTTTTCTAGATTCTGATGACTCTGAGAGAGAGGTGAAGCGGCAAAAGAAAGGAAAATCTGGTTTCCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACAGGAGAGAATGCATTGTCTCGCTCTGAAGTAGTGAAAAGAATGTGGGATTACATGAAGCAAAACAATCTTCAGGTATTGGCCTTCGCAAAGATTCTTTGATAGTATAGCAACACTAAATGCTCTTATCAATTGAGGGATAACCGGCTAGTATCTTATTTGAGAAATTAAAAACAAAAATGCGAGTCTTTGAAGACAAGAGTTTGGACATGCTTGATTTTAACATTTCTGTAGGCCTTCAAATCATATGCCTCTATACATCTGTCATCCATGGCTGGTGCTTTCACTTCGGTGATCAACTTGGTTGCTTCTTATTGCATTTGACTTTCACATTCTTTTATGATGCATTATCGCTCCAAACCAATGTGATTTGTCACAAAAATTTATTGTTCTTACCTAGAAATAGTTTTCAAGCTATTTAGTTATATTTTCCGTTTCCTATGTATTTGTTATATATAATTGTATCTATTTTTAAAAACTTTTTAGAATATGCGGATTCTCTCTGGTGAAATCGTTTTACATGCCTCAGCTCTCGATCTTCGGACAGTTTTTTCTCCCTTTTTTGCTTGTTTCTTTTGAGTATGGCTTGAGCTTATAGAAACGCAACTTATTATAGTGGAATAATGTTCTAGTTTTTGGACTTCCAGTTATAAAGATTATTATTATTATTTCAATTATTCTTGTTCCTTTTCATTTTATGAATGAAAATTCCATATTACTGGAACTTGGAGAGTTCTAATAGTTGAATGAAAAGTTACAAGAGGAACACTCTTCCTTAAGGGAACTTTCAAGAAGTTGTTCCAATTCGAATGAATAAAAATCGTGATCACAAGAGGCTAGAGAGAGTAGACCAATTGTAGGCTTGGAGCTCATAAGATTTGTCTCTTTCTCTCTTCTGCTCCCTACTTTCTCTCTCGGACTTTTGCATGGACTTGTATTAGTAGTCATCATAACGTCATAGGCAATACTTGGCTGAGGAATCTTTCCTTATTTGAATTTGATATTTATGGTCGTTTCTAGATATATAGCCTTTTAGGTATTTCATTGCATCAGGTGATGTGGGGAGGCTTCACTGGCTGGCTGGCTGGCTAACTTTGTGCTTTGTGATGTCGTTATATTGCCTTGTTATATGTTAAATAATTAAATTTACTCTAATTCAAAAGTTTGAACTTTTGGATCTTGAATATCTGACTATATACTTTGTTGACACCATGTTGTTGATTGAAACTTGAAAATTTCAAAAAGTTGTCTGCCTAATTGTCTTAATTTTACATATATTCCATTCCATACCCAAAAAGTACAGTTAAAGTTTGAACTTTGAGTGCTTAAATGAACGCGGCAAAACAATTGTTGTTAGTGAACATGGAAATTTTGTTGTTTTGATGATGCATCACTTAACATCTGAATTTTTTTCTTATTGTTCATTCAGGATCCTTCTGACAAAAGGAGAATAATCTGTGATGAGAAGCTTAAAGAACTGTTCGATGTCGATTCGTTTAACGGCTTCACTGTGTCGAAACTGTTGGCCACTCATTTTGTAAAAAAGACGAAATAGTGAGTTTCTCCCACGTCGTCTTCGTTGATGCAAGAGAATCTGGAATTTTGGTTGAGATAAAGCTTTAGTCGCCTCTTCTTTCTGTGTAATTCTCTGGGATTCACCAACAAGGCAATGGAAAATGGGCTTTACTGACCTGGTATATGTTCCTGAACGTTGGTGGGTGCTATGTTACAGAATCCTCTCTTCAGAATCGAATGGACTAACCATGTCTAATCTTCTATACTTTCTCTTAGCTTTCAAGCAGCAGCTTAAGTTAATTATAGAAGAAAATGTGAAGCATTAGTTCGTGCAAATATGAAAAATTTCCACATGTTTGTCAACATTTGTTTTGTAATTATTCAGTCATATTCATTTAAGTATGATTCACAATTTAAGGGTATTGGAGTTGTCCAAACTCTCACCAATTTAAGGATATGTG

mRNA sequence

TCCTTCTTCCTCCCCCAATCTCCCATCTGTTTCTTCGCCCCAAGTCTTTTTCCTCTTGCGTTGTAACCAAAAGCCACACCCAGCGGAGGCTCTGCCCTCATCTCCGCCACCACCACCACCACCTCTTCCTCCTCCTCCATTTTTTCTCTTTCAATCTCTGCCTTTTTCCTCTTATTCCATTCAGATTGTGGCTTCCAACAATGGTTTCCGACTCGGAGCTCATCAGCCGGCTCCGGGAGTTGCTTCGGAATTCCGACCTCAATACCACTACCACTGCTATCGTCCGCCGGAAGCTCGAGGAGGATTTTTCCATTGATTTGTCCGATAAGAAGAAGTTTATTAGGGAACAGGTCGACTTGTTCCTCCACACTGAGCACCAGAGACTTGATGAAGAAGATGGCGGCGACTGCGACGAAGTCGACCAGGAGGATGGAGATGATAATTCGAAGATGGAAGAGGAGGATGGAGATAGTGGAGACGGAGATAACTACGACGACGATGACAGAAAGAGTAAAACGGGTTCTAACGAGCTTGGTAAAGAGGTGAAGAAAAGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCCCCACAACTACAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTTGTGAAGCAACTATGGAACCACATTAGAGAGAAGAATTTGCAAGACCCCAGTAATAGGAGAAATATTCTCTGTGATGAACCATTTAAAGCACTCTTTGGTGTTAATTCCATCGACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGGCGTTGGAATCAAATGACGTTACTCCAGCCAAATCAAGTCAGAAGGAAAAGCAGCAAAAGGAGAAGCCACAAAAGAAGAAGCGGCGGAAGCAAGGAAAAGAAGATTCTGATGACTCTGAGAGAGAGGTGAAGCGGCAAAAGAAAGGAAAATCTGGTTTCCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACAGGAGAGAATGCATTGTCTCGCTCTGAAGTAGTGAAAAGAATGTGGGATTACATGAAGCAAAACAATCTTCAGGATCCTTCTGACAAAAGGAGAATAATCTGTGATGAGAAGCTTAAAGAACTGTTCGATGTCGATTCGTTTAACGGCTTCACTGTGTCGAAACTGTTGGCCACTCATTTTGTAAAAAAGACGAAATAGTGAGTTTCTCCCACGTCGTCTTCGTTGATGCAAGAGAATCTGGAATTTTGGTTGAGATAAAGCTTTAGTCGCCTCTTCTTTCTGTGTAATTCTCTGGGATTCACCAACAAGGCAATGGAAAATGGGCTTTACTGACCTGGTATATGTTCCTGAACGTTGGTGGGTGCTATGTTACAGAATCCTCTCTTCAGAATCGAATGGACTAACCATGTCTAATCTTCTATACTTTCTCTTAGCTTTCAAGCAGCAGCTTAAGTTAATTATAGAAGAAAATGTGAAGCATTAGTTCGTGCAAATATGAAAAATTTCCACATGTTTGTCAACATTTGTTTTGTAATTATTCAGTCATATTCATTTAAGTATGATTCACAATTTAAGGGTATTGGAGTTGTCCAAACTCTCACCAATTTAAGGATATGTG

Coding sequence (CDS)

ATGGTTTCCGACTCGGAGCTCATCAGCCGGCTCCGGGAGTTGCTTCGGAATTCCGACCTCAATACCACTACCACTGCTATCGTCCGCCGGAAGCTCGAGGAGGATTTTTCCATTGATTTGTCCGATAAGAAGAAGTTTATTAGGGAACAGGTCGACTTGTTCCTCCACACTGAGCACCAGAGACTTGATGAAGAAGATGGCGGCGACTGCGACGAAGTCGACCAGGAGGATGGAGATGATAATTCGAAGATGGAAGAGGAGGATGGAGATAGTGGAGACGGAGATAACTACGACGACGATGACAGAAAGAGTAAAACGGGTTCTAACGAGCTTGGTAAAGAGGTGAAGAAAAGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCCCCACAACTACAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTTGTGAAGCAACTATGGAACCACATTAGAGAGAAGAATTTGCAAGACCCCAGTAATAGGAGAAATATTCTCTGTGATGAACCATTTAAAGCACTCTTTGGTGTTAATTCCATCGACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGGCGTTGGAATCAAATGACGTTACTCCAGCCAAATCAAGTCAGAAGGAAAAGCAGCAAAAGGAGAAGCCACAAAAGAAGAAGCGGCGGAAGCAAGGAAAAGAAGATTCTGATGACTCTGAGAGAGAGGTGAAGCGGCAAAAGAAAGGAAAATCTGGTTTCCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACAGGAGAGAATGCATTGTCTCGCTCTGAAGTAGTGAAAAGAATGTGGGATTACATGAAGCAAAACAATCTTCAGGATCCTTCTGACAAAAGGAGAATAATCTGTGATGAGAAGCTTAAAGAACTGTTCGATGTCGATTCGTTTAACGGCTTCACTGTGTCGAAACTGTTGGCCACTCATTTTGTAAAAAAGACGAAATAG

Protein sequence

MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQRLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGVNSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREVKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIICDEKLKELFDVDSFNGFTVSKLLATHFVKKTK

Homology

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BLAST of Cp4.1LG05g10700 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-09
Identity = 68/217 (31.34%), Postives = 114/217 (52.53%), Query Frame = 0


Query: 14  LLRNSDLNTTTTAIVRRKLEEDFSIDLSDK----KKFIREQVDLFLHTEHQRLDEEDGGD 73
           LL + DL T TT  VR  L+E ++ID+  +     K IR+ +DL    E  R +      
Sbjct: 14  LLSDMDLETVTTKKVRMALKEVYAIDVESQGKAINKLIRKHLDLV--KERPRFER----S 73

Query: 74  CDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGGGFSK----- 133
            +++ +E+     ++ +E   S      + +D ++K      G  V+K+ G  SK     
Sbjct: 74  LEDLLKENATLAIELTKEITVSKRSSGEEKNDSETK------GTHVEKKKGTVSKSPIST 133

Query: 134 -LCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGVNSI 193
              +LS  L   +G  E+ RTEVV++LW +I+  NLQ+P+N++ ILCDE  + + G  S 
Sbjct: 134 RKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG-KST 193

Query: 194 DMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKP 221
           +MF+M+K L+ H+   E   ++      +E ++KEKP
Sbjct: 194 NMFEMHKILASHM--TEPKKISDCPPLIQEVRRKEKP 215

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BLAST of Cp4.1LG05g10700 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08
Identity = 69/230 (30.00%), Postives = 111/230 (48.26%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQV-DLFLHTEH 60
           M   ++ I  +  +L  S+ +  +   VR+ L+  +S++L  ++K I E + + F   + 
Sbjct: 1   MADINKYIPMVDAILSVSNPDEISPKRVRKALQILYSVNLDSQRKLINELILERFGDIQE 60

Query: 61  QRLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRG 120
                    D    DQE      K EE    S          RK K  S    K  KK+ 
Sbjct: 61  NPRVLIPKNDLISRDQELSLRLQKEEERPLRS---------TRKRKGKSESKSKRKKKKN 120

Query: 121 GG------FSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEP 180
                     +   LS  LQ+F+G  E+ RT+VVK +W +I+E +LQ+P +RR ILCDE 
Sbjct: 121 DSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEK 180

Query: 181 FKALFGVNSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKK 224
            + +FG   + MF MNK L+KH++        P +  + E++QK+ P+K+
Sbjct: 181 MEPIFG-KKMTMFSMNKLLTKHLF-------NPDEIVKHEEEQKQTPEKE 213

[Close]

BLAST of Cp4.1LG05g10700 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.2e-08
Identity = 65/232 (28.02%), Postives = 115/232 (49.57%), Query Frame = 0


Query: 11  LRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQV-----DLFLHTEHQRLDEE 70
           ++++L   D  T +   VR+ LEE   +DLS  KK +   +     +    +E + L+++
Sbjct: 8   IKQILGTVDRQTVSAKQVRQLLEERRKVDLSAHKKDLNALILKCFDETAAPSEKESLEKQ 67

Query: 71  ------DGGDCDEVDQEDGDDNSK---MEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVK 130
                  G    E   E+G   +K     +EDG+ G     + D       +N L K +K
Sbjct: 68  APARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQD-----PANNPLNKPMK 127

Query: 131 KRGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKA 190
                      LSP+L EF+G+ +++R + VK+LW +I+  +LQDP+++R ILCD+  K+
Sbjct: 128 -----------LSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKS 187

Query: 191 LFGVNSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQ 229
           +F V+++ MF MNK L+ ++     +D  P    + E+        K+  K+
Sbjct: 188 VFEVDTLHMFTMNKYLT-NLMTKIPDDQLPKPQPKNEEPAAPNDLPKQEEKE 222

[Close]

BLAST of Cp4.1LG05g10700 vs. NCBI nr
Match: XP_023532389.1 (upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 625 bits (1613), Expect = 2.09e-225
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG
Sbjct: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV 240
           NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV
Sbjct: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV 240

Query: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300
           KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC
Sbjct: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300

Query: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           DEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331

[Close]

BLAST of Cp4.1LG05g10700 vs. NCBI nr
Match: XP_022947278.1 (upstream activation factor subunit UAF30-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 613 bits (1580), Expect = 2.16e-220
Identity = 326/331 (98.49%), Postives = 329/331 (99.40%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKK+FIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R+DEEDGGDC EVDQEDGDDNSKMEEEDGDSGDGDNY+DDDRKSKTGSNELGKEVKKRGG
Sbjct: 61  RVDEEDGGDC-EVDQEDGDDNSKMEEEDGDSGDGDNYNDDDRKSKTGSNELGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV 240
           NSIDMFQMNKALSKHIW LESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV
Sbjct: 181 NSIDMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV 240

Query: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300
           KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC
Sbjct: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300

Query: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           DEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 330

[Close]

BLAST of Cp4.1LG05g10700 vs. NCBI nr
Match: XP_022947277.1 (upstream activation factor subunit UAF30-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 608 bits (1568), Expect = 1.51e-218
Identity = 326/332 (98.19%), Postives = 329/332 (99.10%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKK+FIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R+DEEDGGDC EVDQEDGDDNSKMEEEDGDSGDGDNY+DDDRKSKTGSNELGKEVKKRGG
Sbjct: 61  RVDEEDGGDC-EVDQEDGDDNSKMEEEDGDSGDGDNYNDDDRKSKTGSNELGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE-DSDDSERE 240
           NSIDMFQMNKALSKHIW LESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE DSDDSERE
Sbjct: 181 NSIDMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEEDSDDSERE 240

Query: 241 VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRII 300
           VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRII
Sbjct: 241 VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRII 300

Query: 301 CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331

[Close]

BLAST of Cp4.1LG05g10700 vs. NCBI nr
Match: XP_023007206.1 (upstream activation factor subunit UAF30-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 599 bits (1545), Expect = 4.83e-215
Identity = 318/331 (96.07%), Postives = 324/331 (97.89%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEED+SIDLSDKK+FIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDYSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R+DEEDGG CDEVDQEDGDDNSKMEEEDG S DGDNYDDDD KSKTGSNE+GKEVKKRGG
Sbjct: 61  RVDEEDGGGCDEVDQEDGDDNSKMEEEDGGSEDGDNYDDDDGKSKTGSNEIGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEP KALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPLKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV 240
           NSI+MFQMNKALSKHIW LESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSD SEREV
Sbjct: 181 NSINMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDGSEREV 240

Query: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300
           KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDY+KQNNLQDPSDKRRIIC
Sbjct: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYIKQNNLQDPSDKRRIIC 300

Query: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           DEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331

[Close]

BLAST of Cp4.1LG05g10700 vs. NCBI nr
Match: XP_023007205.1 (upstream activation factor subunit UAF30-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 595 bits (1533), Expect = 3.37e-213
Identity = 318/332 (95.78%), Postives = 324/332 (97.59%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEED+SIDLSDKK+FIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDYSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R+DEEDGG CDEVDQEDGDDNSKMEEEDG S DGDNYDDDD KSKTGSNE+GKEVKKRGG
Sbjct: 61  RVDEEDGGGCDEVDQEDGDDNSKMEEEDGGSEDGDNYDDDDGKSKTGSNEIGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEP KALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPLKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE-DSDDSERE 240
           NSI+MFQMNKALSKHIW LESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE DSD SERE
Sbjct: 181 NSINMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEEDSDGSERE 240

Query: 241 VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRII 300
           VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDY+KQNNLQDPSDKRRII
Sbjct: 241 VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYIKQNNLQDPSDKRRII 300

Query: 301 CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 332

[Close]

BLAST of Cp4.1LG05g10700 vs. ExPASy TrEMBL
Match: A0A6J1G661 (upstream activation factor subunit UAF30-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451187 PE=4 SV=1)

HSP 1 Score: 613 bits (1580), Expect = 1.04e-220
Identity = 326/331 (98.49%), Postives = 329/331 (99.40%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKK+FIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R+DEEDGGDC EVDQEDGDDNSKMEEEDGDSGDGDNY+DDDRKSKTGSNELGKEVKKRGG
Sbjct: 61  RVDEEDGGDC-EVDQEDGDDNSKMEEEDGDSGDGDNYNDDDRKSKTGSNELGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV 240
           NSIDMFQMNKALSKHIW LESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV
Sbjct: 181 NSIDMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV 240

Query: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300
           KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC
Sbjct: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300

Query: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           DEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 330

[Close]

BLAST of Cp4.1LG05g10700 vs. ExPASy TrEMBL
Match: A0A6J1G606 (upstream activation factor subunit UAF30-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451187 PE=4 SV=1)

HSP 1 Score: 608 bits (1568), Expect = 7.31e-219
Identity = 326/332 (98.19%), Postives = 329/332 (99.10%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKK+FIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R+DEEDGGDC EVDQEDGDDNSKMEEEDGDSGDGDNY+DDDRKSKTGSNELGKEVKKRGG
Sbjct: 61  RVDEEDGGDC-EVDQEDGDDNSKMEEEDGDSGDGDNYNDDDRKSKTGSNELGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE-DSDDSERE 240
           NSIDMFQMNKALSKHIW LESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE DSDDSERE
Sbjct: 181 NSIDMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEEDSDDSERE 240

Query: 241 VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRII 300
           VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRII
Sbjct: 241 VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRII 300

Query: 301 CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331

[Close]

BLAST of Cp4.1LG05g10700 vs. ExPASy TrEMBL
Match: A0A6J1KZW6 (upstream activation factor subunit UAF30-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499765 PE=4 SV=1)

HSP 1 Score: 599 bits (1545), Expect = 2.34e-215
Identity = 318/331 (96.07%), Postives = 324/331 (97.89%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEED+SIDLSDKK+FIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDYSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R+DEEDGG CDEVDQEDGDDNSKMEEEDG S DGDNYDDDD KSKTGSNE+GKEVKKRGG
Sbjct: 61  RVDEEDGGGCDEVDQEDGDDNSKMEEEDGGSEDGDNYDDDDGKSKTGSNEIGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEP KALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPLKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDDSEREV 240
           NSI+MFQMNKALSKHIW LESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSD SEREV
Sbjct: 181 NSINMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEDSDGSEREV 240

Query: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300
           KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDY+KQNNLQDPSDKRRIIC
Sbjct: 241 KRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYIKQNNLQDPSDKRRIIC 300

Query: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           DEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 DEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331

[Close]

BLAST of Cp4.1LG05g10700 vs. ExPASy TrEMBL
Match: A0A6J1L2C3 (upstream activation factor subunit UAF30-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499765 PE=4 SV=1)

HSP 1 Score: 595 bits (1533), Expect = 1.63e-213
Identity = 318/332 (95.78%), Postives = 324/332 (97.59%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEED+SIDLSDKK+FIREQVDLFLHTEHQ
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDYSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R+DEEDGG CDEVDQEDGDDNSKMEEEDG S DGDNYDDDD KSKTGSNE+GKEVKKRGG
Sbjct: 61  RVDEEDGGGCDEVDQEDGDDNSKMEEEDGGSEDGDNYDDDDGKSKTGSNEIGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEP KALFGV
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPLKALFGV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE-DSDDSERE 240
           NSI+MFQMNKALSKHIW LESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE DSD SERE
Sbjct: 181 NSINMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEEDSDGSERE 240

Query: 241 VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRII 300
           VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDY+KQNNLQDPSDKRRII
Sbjct: 241 VKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYIKQNNLQDPSDKRRII 300

Query: 301 CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 331
           CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK
Sbjct: 301 CDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 332

[Close]

BLAST of Cp4.1LG05g10700 vs. ExPASy TrEMBL
Match: A0A6J1EMX5 (upstream activation factor subunit UAF30-like OS=Cucurbita moschata OX=3662 GN=LOC111434984 PE=4 SV=1)

HSP 1 Score: 503 bits (1295), Expect = 3.60e-177
Identity = 279/338 (82.54%), Postives = 298/338 (88.17%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDSELI RLRE LR+SDLN TTTAIVRRKLEE F +DLSDKK+FIREQVDLFL TEH+
Sbjct: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
           R +EE GGDC+E DQEDGD+N K EEEDGDS DGDN D DD K KTGSN+L K  K+ GG
Sbjct: 61  REEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAK--KRGGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIR  NLQDPSNRRNILCDE  KALF V
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFCV 180

Query: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQK---------KKRRKQGKE 240
           +SI+MFQMNKALSKHIW LESNDV PAKSSQKEKQQKEK +K         KKR+KQGKE
Sbjct: 181 DSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKKRQKQGKE 240

Query: 241 -DSDDSEREVKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQ 300
            DSDDS RE KRQKKGKSGFLAPLQLSDALVTFLGTGE+ALSRS+VVKRMWDY+KQNNLQ
Sbjct: 241 EDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQ 300

Query: 301 DPSDKRRIICDEKLKELFDVDSFNGFTVSKLLATHFVK 328
           DPSDKRR+ICDEKLKELFDV+SF+GFTVSKLLATHFVK
Sbjct: 301 DPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVK 336

[Close]

BLAST of Cp4.1LG05g10700 vs. TAIR 10
Match: AT1G49520.1 (SWIB complex BAF60b domain-containing protein )

HSP 1 Score: 253.4 bits (646), Expect = 2.4e-67
Identity = 161/346 (46.53%), Postives = 215/346 (62.14%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60
           MVSDS+L+++LRE+LR+SDL TTT A VRR+LE  F ++L+DKK F+REQ+D FL     
Sbjct: 1   MVSDSDLVTQLREILRSSDLETTTPASVRRQLEVYFGVELTDKKAFVREQIDAFL----- 60

Query: 61  RLDEEDGGDCDEVDQEDGDDNSKMEEEDGDSGDGDNYDDDDRKSKTGSNELGKEVKKRGG 120
              E D     + +QE+ D N    +E+G   D D              EL  + KKRGG
Sbjct: 61  ---ESDALLESKPEQEEEDCNGDQNDEEGSENDDD------------KTELPVKAKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180
           GF+K+C LSPQL++F+G  ++ARTEVVK++W +IRE +LQDP+NRRNILCDE   +LF V
Sbjct: 121 GFNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRV 180

Query: 181 NSIDMFQMNKALSKHIWAL----------ESNDVTPAKSSQKEKQQKEKPQKKKRRKQGK 240
            +I+MFQMNKAL+KHIWAL          +  DV      + EK  K +   +   ++ +
Sbjct: 181 KTINMFQMNKALAKHIWALNDGDGCFKNVKEEDVDETSGERDEKDVKIEEALENNEEESR 240

Query: 241 EDSDDSEREVKRQ-----------KKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKR 300
           E+ D S R+ KR+           KK   GF     LS  L  F GT +  L+R+EVVK 
Sbjct: 241 EEEDRSVRKRKRKKRKPAKSEEKPKKKGGGFTKVCSLSPELQAFTGTPQ--LARTEVVKM 300

Query: 301 MWDYMKQNNLQDPSDKRRIICDEKLKELFDVDSFNGFTVSKLLATH 326
           +W Y+K+NNLQDPSDKR IICDE L+ LF V+S N F ++K LA H
Sbjct: 301 LWKYIKENNLQDPSDKRTIICDESLRSLFPVESINMFQMNKQLAKH 324

[Close]

BLAST of Cp4.1LG05g10700 vs. TAIR 10
Match: AT3G19080.1 (SWIB complex BAF60b domain-containing protein )

HSP 1 Score: 250.4 bits (638), Expect = 2.1e-66
Identity = 181/470 (38.51%), Postives = 239/470 (50.85%), Query Frame = 0


Query: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHT--- 60
           MVSD +L++RLRE+L +SDLNT T A VRR+LE DF +DL+DKK +IR+Q+D FL +   
Sbjct: 1   MVSDLDLVTRLREILGSSDLNTATPASVRRQLEADFGVDLTDKKAYIRDQIDTFLESNGA 60

Query: 61  -----------EHQRLD----EEDGGDCDEVDQE-------------------------- 120
                      E+   D    E +GGD +++D +                          
Sbjct: 61  VEDKPESPKVEEYINADEIKAEIEGGDGEDLDGDGSGSEEEKEERPVKAKKRGGGITKVS 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 QLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDELLHSLFRVKTINMF 180

Query: 181 ----------------DGDDNSKMEEEDGDSGDG------------DNYDDDD------- 240
                           DG  N   EE++ ++ +G            +N +++        
Sbjct: 181 QMNKALTKHIWPLGDGDGCANDVKEEDEDEASEGTDKKGEQSEEVEENKEEESEEQEVRS 240

Query: 241 ---RKSKTGSNELGKEVKKRGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKN 300
              RK K  +  + K  +K GGGF+K+CSLSP+LQ F GV E+ARTEVVK LW +I+E N
Sbjct: 241 LRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENN 300

Query: 301 LQDPSNRRNILCDEPFKALFGVNSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKE 329
           LQDP+++R+I+CDE F++LF V SI+MFQMNK L+KHIW LE N    A  S   K  K 
Sbjct: 301 LQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKHIWPLEDN----AGESVSSKSPKN 360

[Close]

BLAST of Cp4.1LG05g10700 vs. TAIR 10
Match: AT4G22360.1 (SWIB complex BAF60b domain-containing protein )

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-35
Identity = 78/219 (35.62%), Postives = 129/219 (58.90%), Query Frame = 0


Query: 112 GKEVKKRGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCD 171
           G + K   GG +K+C +SP+L+  +G P + RTE+V+QLW +IR+ NLQDPSN+R I+CD
Sbjct: 187 GTKRKGGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICD 246

Query: 172 EPFKALFGVNSIDMFQMNKALSKHIWALESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKE 231
           +  + +F  +  DMF+MNK L+KHI  L+     P+K S + K+ K + + K        
Sbjct: 247 DALRVVFETDCTDMFKMNKLLAKHILPLD-----PSKDSGQAKKAKTEVETKTE------ 306

Query: 232 DSDDSEREVKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQD 291
                      +    +   + + LS+ L  F GTGE  ++  E+++R+W+Y+K NNL+D
Sbjct: 307 ---------TTEPISSTAISSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLED 366

Query: 292 PSDKRRIICDEKLKELFDVDSFNGFTVSKLLATHFVKKT 331
           P +   I CDEKL++L   +S +   ++++L  H  K++
Sbjct: 367 PVNPMAIQCDEKLRDLLGCESISAVGINEMLRRHMYKQS 385

[Close]

BLAST of Cp4.1LG05g10700 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-13
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 248 SGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIICDEKLKEL 307
           +G L  + +S  L  F+  GEN +SR+  VK++W+Y+K NNLQ+P +KR I+CDE+LK +
Sbjct: 28  TGILKVVPVSKPLANFI--GENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTI 87

Query: 308 FDVDSFNGF-TVSKLLATHFVK 329
           F      GF  +SKLL+ HF K
Sbjct: 88  FSGKDTVGFLEISKLLSQHFPK 107

[Close]

BLAST of Cp4.1LG05g10700 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-12
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 104 SKTGSNELGKEVKKRGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPS 163
           S T S+E     K+   G  K   +SP++Q+ + +PE+ART+ +K++W +I+E +LQDP 
Sbjct: 47  SATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQ 106

Query: 164 NRRNILCDEPFKALF-GVNSIDMFQMNKALSKH 196
           N+R ILCDE  K +F G + +   ++ K +  H
Sbjct: 107 NKREILCDEKLKKIFEGRDRVGFLEIAKLIGPH 139

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g10700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08747	1.0e-09	31.34	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	1.1e-08	30.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
O74503	7.2e-08	28.02	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Cp4.1LG05g10700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532389.1	2.09e-225	100.00	upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947278.1	2.16e-220	98.49	upstream activation factor subunit UAF30-like isoform X2 [Cucurbita moschata]	[more]
XP_022947277.1	1.51e-218	98.19	upstream activation factor subunit UAF30-like isoform X1 [Cucurbita moschata]	[more]
XP_023007206.1	4.83e-215	96.07	upstream activation factor subunit UAF30-like isoform X2 [Cucurbita maxima]	[more]
XP_023007205.1	3.37e-213	95.78	upstream activation factor subunit UAF30-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g10700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G661	1.04e-220	98.49	upstream activation factor subunit UAF30-like isoform X2 OS=Cucurbita moschata O...	[more]
A0A6J1G606	7.31e-219	98.19	upstream activation factor subunit UAF30-like isoform X1 OS=Cucurbita moschata O...	[more]
A0A6J1KZW6	2.34e-215	96.07	upstream activation factor subunit UAF30-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1L2C3	1.63e-213	95.78	upstream activation factor subunit UAF30-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1EMX5	3.60e-177	82.54	upstream activation factor subunit UAF30-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Cp4.1LG05g10700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49520.1	2.4e-67	46.53	SWIB complex BAF60b domain-containing protein	[more]
AT3G19080.1	2.1e-66	38.51	SWIB complex BAF60b domain-containing protein	[more]
AT4G22360.1	3.2e-35	35.62	SWIB complex BAF60b domain-containing protein	[more]
AT2G35605.1	2.6e-13	46.34	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	1.0e-12	37.63	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 250..331 e-value: 1.7E-27 score: 107.3 coord: 122..201 e-value: 2.0E-34 score: 130.3
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 125..196 e-value: 4.8E-29 score: 100.0 coord: 253..326 e-value: 1.7E-26 score: 91.9
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 121..198 score: 21.844357
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 249..328 score: 25.467201
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 2..55 e-value: 1.2E-16 score: 60.3
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 243..331 e-value: 3.0E-30 score: 106.1
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 116..205 e-value: 7.8E-31 score: 107.8
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 118..200
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 246..328
None	No IPR available	GENE3D	1.10.10.60		coord: 1..59 e-value: 1.1E-10 score: 43.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..95
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..329
None	No IPR available	PANTHER	PTHR13844:SF53	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN	coord: 1..329
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 254..326 e-value: 2.41966E-31 score: 110.711
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 126..196 e-value: 2.04392E-36 score: 123.808
None	No IPR available	SUPERFAMILY	109715	DEK C-terminal domain	coord: 3..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g10700.1	Cp4.1LG05g10700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus