Cp4.1LG05g10660 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g10660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pectin lyase-like superfamily protein
Location	Cp4.1LG05: 6989613 .. 6993508 (-)
RNA-Seq Expression	Cp4.1LG05g10660
Synteny	Cp4.1LG05g10660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTGAGAAATCGAGTTTCGCCTCTCTCATCAACCCTTCCTGCTCCTCTCTTCTCCTCCTCTTCATCTTCATCGCCGTCCTCACCCTTCAAATCGCCACCAGAACTCCTTTTCCGATCTGGATGCCTTCCTCCACTCTCACCACGGACACCGATTCCGAACCGACCTGCTCCGCCTTCTTCCACAGGGATGTAGCGCCGGAGACGGTGGTTATGTCGATAACGGATTTCGGAGGAGTGGGAGACGGGAGGACTTCCAACACGGAAGCGTTCCGTAAGGCGATCGAGTACATGCGGCGGTTCGGCGAGAAAGGCGGGTCTAAACTGGTCGTTCCCAAGGGCAGGTGGGTCACGGGCAGTTTTAATCTCACCACTAATTTCACGCTTTTTCTCCAACGTGGCGCGGTTATTTTGGGCTCACAGGTCCGCCTCTTCCTTCCCCTTTTTTTTCTTACTTTTATCGCATTATACTAAATTATATTCCGAAAATTTAAATAAATTATTAAAATTATAGGAGCCGAATTAAATGTATATATATATATTTTCTGGAAACTCTGCGGTGATTTTTTTTTTAGAGCTGGGTATTTATTTATTTTAATTTATTATGGTTTAGAAAGGGACAAGAACTTTGTGATTCTGGGGAAGAAGAAAAGGCCAAATGGAGTTTTATTACTTACCAGAAAACGAAAAATCTGAATGCTGACTCTGGCGGTGTCACCTATGTTGTTTTTTCACATTTCTTTTTTAAAAAAAACAACCAAAATATATTTTGTGATGTCGGGAGGAGAACCTTCCCCTAGGAGACGAGTTTGCTAGCGGTGGATCTGAGCGTTACAAATAGTATTAGAGTCAGACACTAGACAATGCTAGCCTTCTCACTATTCCTTCTCGCTGTTCCCCAAAGGGGTAAACACGAGCTAGTGTGTCATAAGGACTCTGGCCCCTAAAACGGTGGATTTAATGGTGGTCGCACGTCAATTAGAGAAAGGAAGAGTACAGCAATGGGTCTCGAATGGGGTGGATTGTGATGTTTTCCCACCTTGGTTGGGGAAAAGAACAAAAACACTGTTTATAAAGGTGTGAAAACCTTCTCTAGCAAACACAAAAACACGGTTTATAAAGGTGNTTTTTTTTTTTTTTTTGAATTATTATGAGAGGGTATTATTTGAAATTGTTGAATGAATTATTTTGTTTATATCAATCATGGTGGCATGTTAGTGTGAAAAAAAGATATGTTTTTTTAAAATATTTTATATTTTTTGTTAAAAAAAAAAAAAAAAAAGGATCCAGATGAGTGGCCCATTATAGAGCCACTACCTTCTTATGGAAGAGGAAGAGAGAGATTGGGAGGAAGACATATCAGCCTCATTCATGGCAATGCCCTTTCCAATGTCCTCATCACAGGTACTCCCTCTTCTTTGCCTCTTTGTTTATATATATATATTTTTATTTTGGCTCCTTCTTCAATGCTGCCATTTTATATTCCCTCAGGATTCTTGAATTTTGTAAACTAATGGCATGCTACTTTTCTTTTCTCAACTTCATCGCTCAGCCATTTATATTGGATTTTAGGGCCCATTTTATACCATTCTTATTATTTTCCCAATCTTTTGTCAAATCGGATCCTAGTAATGCTTCGTCTACATTGCCCATTGCCCCGGTACATTGAACTGAAAATAGTGTGAACTCTTTTGCTATATTTCGTCTAATGGTCTAACTCCATCGCCCCGTGTCCACCTCTTTTGGGGCTTAGCCTCCTTGTTGGCACACCGTTCGGTGTCTGGTGTCACAATCCCACTTTGATGGTAGCGGACTTGCGATTGTGCAGCACTCACTTCTTAGTAACAAGTGAGTTAAGTCTATTCGTTCTTTCGTCGCCTACGGTCAAGCAACGTATGCTCGAACCTCTGGCCCTGATTCAAGAAGAAGGTTTTAGAAAACAGGAGCAGAGAGATTTTGAAAGAGGGTTTTCAAAGCAAGATTTGAGAAATTGAAATTGGTGTTATATGGGAATGTAAGCAAAAAGGCAATAACAAGGACTTACTGCATATAAGAAGTTGATAACTAGTCATATCCGTTATAGTACATTTTGAGTCATTTCATATCTGTCAGGCCTAGACATGATTTTTCCGAAATGTCATACTTCTTATAAATACAAAAGTAAAATACTACAGCGTGGAAAGACAAAGGATTTGACTTGTCATGGGCATGCGGCCATGGGCAACATGCCTTAGACGAGCATAACCGTGACACTTGGCTCTGATACCATTTATAATAGCCCAAGCTCACTTCTAGTAGATATTGTCTTACTCTCTTTTGGGATTCTCCTCAACGTTTTTAAAACGTGTGTTAGGGAGTGGTTTCCACACTCTTATAAAGAATGGTTTGTGTCTCTACTATCAGTATGGGATCTCACCATTCGTATTGAAGTCGTTTAGCTATGTTTATGTTTGGTTTGAAGAAGTTCTACATTATGCAAATTTGTTGAGTGTGTGAATTTTTCCAGGAGAGAATGGAACTATTGATGGTCAGGGGAAGATGTGGTGGGACCTATGGTGGAACAGGACATTAAATCACACAAGAGGCCATCTTATAGAGCTCATAAACTCCCACAACATTCTCATTTCCAATCTCACCTTAAAAAATTCTCCCTTCTGGACCGTCCATCCCGTCTATTGCAGGTTTCGATCTCGATTTACTCTGTTCGATCCACGACTTCTATTTGGTTCTTAAACTTCTCTTCTGTATTTCAGCAATGTCGTTATCAAAAACATGACGATCTTGGCTCCCCTCAACGCCCCGAACACTGACGGTATCGATCCAGGTATAGCTTCTTTTCTAAATAATATACACAATTAAGATCTAGAAAACAATGGTGAAGTTCTAAATTCCAAACGCTCATCTTACGCTCTAGATTCGAGTACTAATATCTGTATCGAAGACTGTTACATCGAGAGCGGAGATGATCTAGTTGCGGTGAAAAGTGGATGGGATCAATATGGAATCAACCTTGCACGTCCGAGCTCAAATATCATTATAAGACGAGTATCTGGCACCACTCCAACCTGTTCAGGAGTCGGAATAGGAAGCGAGATGTCGGGTGGAATATCAAACATAACGATCGAGGATTTAAACATTTGGGATTCAGCAGCCGGTGTTCGCATCAAATCGGACCAAGGAAGAGGAGGGTACATTGCAAATATTAGTATAAGCAACTTTGTAATGAACAGAGTAAAGATGGCTATAAGGTTCAGCAAGGGTTCAAACGACCATCCGGATGAAGAATGGGATCCAAAGGCAGTTCCCATAGTTAAAGGTATTTTCATAAGCAATATCACGAGCTTAAATTCAACAAAGGCTCCTGTTCTGAATGGCATAGAGGGCACATTATTCGATGGTGTGTGTATGAAAAATGTCACTATTCTTGGTCTCGCTCCCTCCGCAAAGTGGCACTGTGCTTTCGTGTCGGGCTTTAGCAGTGCGGTGTTTCCTACGCCATGTCCTCAGCTGCAAAACATCACGGTCTCATCGATGTGCTCGTGATTTTAAGCTTCTGCAGGCACAGTTTTGCTTACTTTTGGGCATCACATGAGACCATGACATATGCTTGGAGCTTTTCAGTTTTCAAAATTTGAGTTATATTACGACGATGGATCGATCGAGGACGTGCTGCTAGCTAGACATGAGCAGCAGCTACACAGGTGATGTGTGTAAGTTTTTATGGTGAAAAAGTGGTTCTATTTAACAAAATTCACACATGAGATTGTGAGATTTTAGTGACTGACCCAACCATCCACATGTTGTACAAAGTGAGGGATCTGTGTTTGTAACATTTCATAGTTATTATTTATTACTATTCTTTTGTTTGGAAATAAGAGGAAAGTTAGGCACCT

mRNA sequence

ATGGACGATTCGAGTACTAATATCTGTATCGAAGACTGTTACATCGAGAGCGGAGATGATCTAGTTGCGGTGAAAAGTGGATGGGATCAATATGGAATCAACCTTGCACGTCCGAGCTCAAATATCATTATAAGACGAGTATCTGGCACCACTCCAACCTGTTCAGGAGTCGGAATAGGAAGCGAGATGTCGGGTGGAATATCAAACATAACGATCGAGGATTTAAACATTTGGGATTCAGCAGCCGGTGTTCGCATCAAATCGGACCAAGGAAGAGGAGGGTACATTGCAAATATTAGTATAAGCAACTTTGTAATGAACAGAGTAAAGATGGCTATAAGGTTCAGCAAGGGTTCAAACGACCATCCGGATGAAGAATGGGATCCAAAGGCAGTTCCCATAGTTAAAGGTATTTTCATAAGCAATATCACGAGCTTAAATTCAACAAAGGCTCCTGTTCTGAATGGCATAGAGGGCACATTATTCGATGGTGTGTGTATGAAAAATGTCACTATTCTTGGTCTCGCTCCCTCCGCAAAGTGGCACTGTGCTTTCGTGTCGGGCTTTAGCAGTGCGGTGTTTCCTACGCCATGTCCTCAGCTGCAAAACATCACGGTCTCATCGATGTGCTCGTGATTTTAAGCTTCTGCAGGCACAGTTTTGCTTACTTTTGGGCATCACATGAGACCATGACATATGCTTGGAGCTTTTCAGTTTTCAAAATTTGAGTTATATTACGACGATGGATCGATCGAGGACGTGCTGCTAGCTAGACATGAGCAGCAGCTACACAGGTGATGTGTGTAAGTTTTTATGGTGAAAAAGTGGTTCTATTTAACAAAATTCACACATGAGATTGTGAGATTTTAGTGACTGACCCAACCATCCACATGTTGTACAAAGTGAGGGATCTGTGTTTGTAACATTTCATAGTTATTATTTATTACTATTCTTTTGTTTGGAAATAAGAGGAAAGTTAGGCACCT

Coding sequence (CDS)

ATGGACGATTCGAGTACTAATATCTGTATCGAAGACTGTTACATCGAGAGCGGAGATGATCTAGTTGCGGTGAAAAGTGGATGGGATCAATATGGAATCAACCTTGCACGTCCGAGCTCAAATATCATTATAAGACGAGTATCTGGCACCACTCCAACCTGTTCAGGAGTCGGAATAGGAAGCGAGATGTCGGGTGGAATATCAAACATAACGATCGAGGATTTAAACATTTGGGATTCAGCAGCCGGTGTTCGCATCAAATCGGACCAAGGAAGAGGAGGGTACATTGCAAATATTAGTATAAGCAACTTTGTAATGAACAGAGTAAAGATGGCTATAAGGTTCAGCAAGGGTTCAAACGACCATCCGGATGAAGAATGGGATCCAAAGGCAGTTCCCATAGTTAAAGGTATTTTCATAAGCAATATCACGAGCTTAAATTCAACAAAGGCTCCTGTTCTGAATGGCATAGAGGGCACATTATTCGATGGTGTGTGTATGAAAAATGTCACTATTCTTGGTCTCGCTCCCTCCGCAAAGTGGCACTGTGCTTTCGTGTCGGGCTTTAGCAGTGCGGTGTTTCCTACGCCATGTCCTCAGCTGCAAAACATCACGGTCTCATCGATGTGCTCGTGA

Protein sequence

MDDSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSEMSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHPDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWHCAFVSGFSSAVFPTPCPQLQNITVSSMCS

Homology

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 94/214 (43.93%), Postives = 129/214 (60.28%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DS TN  IEDCYI SGDD VAVKSGWD+YGI    P+  ++IRR++  +P  + + +GSE
Sbjct: 255 DSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSE 314

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGI ++  ED+   +S +G+RIK+  GRGGY+ +I +    M  +K A   +     H
Sbjct: 315 MSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSH 374

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAK-- 182
            D  +DPKA P+++GI   ++ + N + A  L GI    F G+C+ NVTI  LA  AK  
Sbjct: 375 ADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTI-HLAAKAKKV 434

Query: 183 -WHCAFVSGFSSAVFPTPCPQL--QNITVSSMCS 212
            W C  V G SS V PTPC  L  Q    +S+C+
Sbjct: 435 PWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCN 467

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy Swiss-Prot
Match: P18192 (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08
Identity = 58/169 (34.32%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 4   SSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSEM 63
           SS NI I    I +GDD VA+K+     G +  R  S  I+    GT     G+ IGSE 
Sbjct: 234 SSKNITIAHSNISTGDDNVAIKA---YKGRSETRNIS--ILHNEFGTG---HGMSIGSE- 293

Query: 64  SGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHP 123
           + G+ N+T++DL +  +  G+RIKSD+   G +  +  SN VM  V   I       D  
Sbjct: 294 TMGVYNVTVDDLIMTGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVI-----DTV 353

Query: 124 DEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTI 173
            E+ +   VP    I   +ITS  +    VLNG        V MKNV +
Sbjct: 354 YEKKEGSNVPDWSDITFKDITS-QTKGVVVLNGENAKKPIEVTMKNVKL 387

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy Swiss-Prot
Match: P26509 (Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-08
Identity = 55/169 (32.54%), Postives = 79/169 (46.75%), Query Frame = 0


Query: 4   SSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSEM 63
           SS NI I    I +GDD VA+K+   +     A   +  I+    GT     G+ IGSE 
Sbjct: 234 SSKNITIAYSNIATGDDNVAIKAYKGR-----AETRNISILHNDFGTG---HGMSIGSE- 293

Query: 64  SGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHP 123
           + G+ N+T++DL +  +  G+RIKSD+   G +  +  SN VM  V   I       D  
Sbjct: 294 TMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVI-----DTV 353

Query: 124 DEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTI 173
            E+ +   VP    I   ++TS  +    VLNG        V MKNV +
Sbjct: 354 YEKKEGSNVPDWSDITFKDVTS-ETKGVVVLNGENAKKPIEVTMKNVKL 387

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy Swiss-Prot
Match: P27644 (Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-08
Identity = 49/165 (29.70%), Postives = 84/165 (50.91%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGW---DQYGINLARPSSNIIIRRVSGTTPTCSGVGI 62
           +S  N+ I       GDD +AVK+G    D    +LA  +  I +R      P   G+ I
Sbjct: 78  ESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAE-TRGITVRHCL-MQPGHGGLVI 137

Query: 63  GSEMSGGISNITIEDLNIWDSAAGVRIKSD-QGRGGYIANISISNFVMNRVKMAIRFSKG 122
           GSEMSGG+ ++T+ED ++  +  G+R+K+  +  GG + NI++   +++ V+ A+  S  
Sbjct: 138 GSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTAL--SAN 197

Query: 123 SNDHPD----EEW----DPKAV----PIVKGIFISNITSLNSTKA 152
           ++ H D    ++W    +P  V    P V GI + ++   N   A
Sbjct: 198 AHYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDVEIRNLAHA 238

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy Swiss-Prot
Match: P20041 (Polygalacturonase OS=Ralstonia solanacearum OX=305 GN=pglA PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 5   STNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSEMS 64
           STN+ +   YI +GDD VAVK+         + P+ N++            G+ IGSE +
Sbjct: 291 STNVVLAYSYINTGDDHVAVKAS--------SGPTRNLLF--AHNHFYYGHGLSIGSETN 350

Query: 65  GGISNITIEDLNI--WDSAA--GVRIKSDQGRGGYIANISISNFVMNRVKMAIRF 116
            G+SN+ + DL +   DS+A  G+RIKSD  RGG + NI      M  VK  + F
Sbjct: 351 TGVSNMLVTDLTMDGNDSSAGNGLRIKSDASRGGKVTNIVYDGICMRNVKEPLVF 395

[Close]

BLAST of Cp4.1LG05g10660 vs. NCBI nr
Match: KAG7035281.1 (putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 427 bits (1099), Expect = 9.08e-149
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE
Sbjct: 152 DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 211

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 212 MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 271

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 272 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 331

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 332 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 360

[Close]

BLAST of Cp4.1LG05g10660 vs. NCBI nr
Match: XP_023533571.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427 bits (1099), Expect = 4.24e-147
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE
Sbjct: 265 DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 324

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 325 MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 384

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 385 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 444

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 445 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 473

[Close]

BLAST of Cp4.1LG05g10660 vs. NCBI nr
Match: XP_022946971.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 426 bits (1096), Expect = 1.21e-146
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE
Sbjct: 265 DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 324

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 325 MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 384

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDEEWDPKAVP+VKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 385 PDEEWDPKAVPMVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 444

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 445 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 473

[Close]

BLAST of Cp4.1LG05g10660 vs. NCBI nr
Match: XP_023007164.1 (probable polygalacturonase [Cucurbita maxima])

HSP 1 Score: 426 bits (1096), Expect = 1.25e-146
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE
Sbjct: 266 DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 325

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITI+DLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 326 MSGGISNITIDDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 385

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 386 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 445

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 446 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 474

[Close]

BLAST of Cp4.1LG05g10660 vs. NCBI nr
Match: TYK02072.1 (putative polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 392 bits (1007), Expect = 1.43e-135
Identity = 185/209 (88.52%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTN+CIEDCYIESGDDLVAVKSGWDQYGINLARPSSNI+IRRVSGTTPTCSGVGIGSE
Sbjct: 97  DSSTNVCIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIVIRRVSGTTPTCSGVGIGSE 156

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITIEDLN+WDSAAG+RIKSDQGRGGYIAN+SI+NFVMNRVKMAIRFS+GSNDH
Sbjct: 157 MSGGISNITIEDLNVWDSAAGIRIKSDQGRGGYIANVSITNFVMNRVKMAIRFSRGSNDH 216

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDE++DPKAVP VKGIFI+N+ SLNSTKAPVL+GI GT +DGVCMKNVTILGLAPSAKWH
Sbjct: 217 PDEQFDPKAVPKVKGIFITNLMSLNSTKAPVLDGIAGTSYDGVCMKNVTILGLAPSAKWH 276

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFS++VFP PCPQLQN T S +CS
Sbjct: 277 CAFVSGFSTSVFPMPCPQLQNTTFSPLCS 305

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy TrEMBL
Match: A0A6J1G526 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111450990 PE=3 SV=1)

HSP 1 Score: 426 bits (1096), Expect = 5.85e-147
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE
Sbjct: 265 DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 324

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 325 MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 384

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDEEWDPKAVP+VKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 385 PDEEWDPKAVPMVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 444

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 445 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 473

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy TrEMBL
Match: A0A6J1L474 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111499740 PE=3 SV=1)

HSP 1 Score: 426 bits (1096), Expect = 6.05e-147
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE
Sbjct: 266 DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 325

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITI+DLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 326 MSGGISNITIDDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 385

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 386 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 445

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 446 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 474

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy TrEMBL
Match: A0A5D3BTE0 (Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00570 PE=3 SV=1)

HSP 1 Score: 392 bits (1007), Expect = 6.95e-136
Identity = 185/209 (88.52%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTN+CIEDCYIESGDDLVAVKSGWDQYGINLARPSSNI+IRRVSGTTPTCSGVGIGSE
Sbjct: 97  DSSTNVCIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIVIRRVSGTTPTCSGVGIGSE 156

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITIEDLN+WDSAAG+RIKSDQGRGGYIAN+SI+NFVMNRVKMAIRFS+GSNDH
Sbjct: 157 MSGGISNITIEDLNVWDSAAGIRIKSDQGRGGYIANVSITNFVMNRVKMAIRFSRGSNDH 216

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDE++DPKAVP VKGIFI+N+ SLNSTKAPVL+GI GT +DGVCMKNVTILGLAPSAKWH
Sbjct: 217 PDEQFDPKAVPKVKGIFITNLMSLNSTKAPVLDGIAGTSYDGVCMKNVTILGLAPSAKWH 276

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFS++VFP PCPQLQN T S +CS
Sbjct: 277 CAFVSGFSTSVFPMPCPQLQNTTFSPLCS 305

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy TrEMBL
Match: A0A0A0LJW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334510 PE=3 SV=1)

HSP 1 Score: 394 bits (1011), Expect = 4.47e-134
Identity = 186/209 (89.00%), Postives = 201/209 (96.17%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTN+CIEDCYIESGDDLVAVKSGWDQYGINLARPSSNI+IRRVSGTTPTCSGVGIGSE
Sbjct: 262 DSSTNVCIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIVIRRVSGTTPTCSGVGIGSE 321

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITIEDLN+WDSAAG+RIKSDQGRGGYIAN+SI+NFVMNRVKMAIRFS+GSNDH
Sbjct: 322 MSGGISNITIEDLNVWDSAAGIRIKSDQGRGGYIANVSITNFVMNRVKMAIRFSRGSNDH 381

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PDE++DPKAVP VKGIFI+N+ SLNSTKAPVL GI GT +DGVCMKNVTILGL PSAKWH
Sbjct: 382 PDEQFDPKAVPKVKGIFITNLMSLNSTKAPVLYGIAGTSYDGVCMKNVTILGLTPSAKWH 441

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFS++VFPTPCPQLQN T SS+CS
Sbjct: 442 CAFVSGFSTSVFPTPCPQLQNTTFSSLCS 470

[Close]

BLAST of Cp4.1LG05g10660 vs. ExPASy TrEMBL
Match: A0A6J1DQZ6 (probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111023522 PE=3 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 1.09e-133
Identity = 183/209 (87.56%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTNICIEDCYIESGDDLVAVKSGWDQYGIN+A+PSSNI+IRRVSGTTPTCSGVGIGSE
Sbjct: 206 DSSTNICIEDCYIESGDDLVAVKSGWDQYGINMAQPSSNIVIRRVSGTTPTCSGVGIGSE 265

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGISNITIEDLN+WDSAAG+RIKSDQGRGGYIAN+SISNFVMNRVK+ IRFS+GSNDH
Sbjct: 266 MSGGISNITIEDLNVWDSAAGIRIKSDQGRGGYIANVSISNFVMNRVKVPIRFSRGSNDH 325

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PD++WDPKAVP VKG+FISN+ SLNSTKAPVL+GI+G  FDG+CMKNVTILGLAPS KWH
Sbjct: 326 PDDKWDPKAVPRVKGVFISNVVSLNSTKAPVLDGIKGASFDGICMKNVTILGLAPSVKWH 385

Query: 183 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 211
           CAFVSGFS+AVFPTPC QLQN T SS+CS
Sbjct: 386 CAFVSGFSTAVFPTPCLQLQNDTFSSLCS 414

[Close]

BLAST of Cp4.1LG05g10660 vs. TAIR 10
Match: AT4G33440.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 312.0 bits (798), Expect = 3.7e-85
Identity = 142/199 (71.36%), Postives = 174/199 (87.44%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTN+CIEDCYIESGDDLVAVKSGWDQYG+ +ARPSSNI+IRR+SGTT TCSGVGIGSE
Sbjct: 264 DSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSNIVIRRISGTTRTCSGVGIGSE 323

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGI NIT+ED+++WDSAAG+RIK+D+GRGGYI+NI+ +N ++ +VK+ IRFS GSNDH
Sbjct: 324 MSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFNNVLLEKVKVPIRFSSGSNDH 383

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
            D++WDPKA+P VKGI+ISN+ SLNS KAP+L G+EGT F  VC++NVT+LGL  + KW 
Sbjct: 384 SDDKWDPKALPRVKGIYISNVVSLNSRKAPMLLGVEGTSFQDVCLRNVTLLGLPKTEKWK 443

Query: 183 CAFVSGFSSAVFPTPCPQL 202
           C  VSG++S VFP  CPQL
Sbjct: 444 CKDVSGYASDVFPLSCPQL 462

[Close]

BLAST of Cp4.1LG05g10660 vs. TAIR 10
Match: AT4G23820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 4.4e-54
Identity = 102/210 (48.57%), Postives = 141/210 (67.14%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSS N+CIED YI +GDDLVA+KSGWDQYGI   RPSSNI IRR++G++P  +G+ IGSE
Sbjct: 233 DSSYNVCIEDSYISTGDDLVAIKSGWDQYGIAYGRPSSNITIRRITGSSP-FAGIAIGSE 292

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
            SGGI NI  E + + +   GV IK++ GRGGYI NI IS+  ++  K  I+ +  + DH
Sbjct: 293 TSGGIKNIIAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIKIAGDTGDH 352

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAK-W 182
           PDE ++P A+P+VKGI I N+  +N   A  + G++G+ F G+C+  + + G   S K W
Sbjct: 353 PDENYNPNALPVVKGIHIKNVWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSLNSYKTW 412

Query: 183 HCAFVSGFSSAVFPTPCPQLQNITVSSMCS 212
            C+ VSG S  V P PC +L+    S++CS
Sbjct: 413 KCSDVSGTSLKVSPWPCSELRTTGGSNLCS 441

[Close]

BLAST of Cp4.1LG05g10660 vs. TAIR 10
Match: AT3G62110.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 100/195 (51.28%), Postives = 136/195 (69.74%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSSTN+CIEDCYI +GDDLV++KSGWD+YGI+ ARPSS I I R++G T + SG+ IGSE
Sbjct: 235 DSSTNVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSSKIKINRLTGQTTSSSGIAIGSE 294

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGG+S I I+DL++++S  G+RIK+  GRGGY+ N+ I N  ++ VK AIRF+    +H
Sbjct: 295 MSGGVSEIYIKDLHLFNSNTGIRIKTSAGRGGYVRNVHILNVKLDNVKKAIRFTGKYGEH 354

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAK-- 182
           PDE++DPKA+P ++ I   N+       A +L GIEG +F  +C  NVT+     S K  
Sbjct: 355 PDEKYDPKALPAIEKITFENVNGDGIGVAGLLEGIEGDVFKNICFLNVTLRVKKNSKKSP 414

Query: 183 WHCAFVSGFSSAVFP 196
           W C+ V G+S  V P
Sbjct: 415 WECSNVRGYSQWVSP 429

[Close]

BLAST of Cp4.1LG05g10660 vs. TAIR 10
Match: AT5G41870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 202.6 bits (514), Expect = 3.1e-52
Identity = 94/203 (46.31%), Postives = 140/203 (68.97%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DSS+N+CIED YI +GDDLVAVKSGWD+YGI   RPS +I IRR++G++P  +G+ IGSE
Sbjct: 238 DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYNRPSRDITIRRITGSSP-FAGIAIGSE 297

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
            SGGI N+T+E++ +++S  G+ IK++ GRGG I  I+IS   + +V+  I+ S  + DH
Sbjct: 298 TSGGIQNVTVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIKISGDTGDH 357

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 182
           PD++++  A+PIV+GI I N+  +   +A ++ G++ + F  +C  NVT+ G   S  W 
Sbjct: 358 PDDKFNTSALPIVRGITIKNVWGIKVERAGMVQGLKDSPFTNLCFSNVTLTGTKRSPIWK 417

Query: 183 CAFVSGFSSAVFPTPCPQLQNIT 206
           C+ V G +  V PTPCP+L   T
Sbjct: 418 CSDVVGAADKVNPTPCPELSATT 439

[Close]

BLAST of Cp4.1LG05g10660 vs. TAIR 10
Match: AT4G23500.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-45
Identity = 88/201 (43.78%), Postives = 125/201 (62.19%), Query Frame = 0


Query: 3   DSSTNICIEDCYIESGDDLVAVKSGWDQYGINLARPSSNIIIRRVSGTTPTCSGVGIGSE 62
           DS TN  IEDCYI SGDD +AVKSGWDQYGIN   P+  ++IRR++  +P  + + +GSE
Sbjct: 260 DSCTNTRIEDCYIVSGDDCIAVKSGWDQYGINYGMPTKQLLIRRLTCISPDSAVIALGSE 319

Query: 63  MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 122
           MSGGI ++  ED+   +S +G+RIK+  GRGGY+ ++ +    M  +K     +     H
Sbjct: 320 MSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYVKDVYVRGMTMMTMKYVFWMTGSYGSH 379

Query: 123 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTI-LGLAP-SAK 182
           PD+ +DPKA+P+++ I   ++ + N T    L GI G  F G+C+ NVTI L   P    
Sbjct: 380 PDDHYDPKALPVIQNINYQDMVAENVTMPAQLAGISGDQFTGICISNVTITLSKKPKKVL 439

Query: 183 WHCAFVSGFSSAVFPTPCPQL 202
           W+C  VSG++S V P PC  L
Sbjct: 440 WNCTDVSGYTSGVTPQPCQLL 460

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g10660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	2.0e-43	43.93	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
P18192	2.7e-08	34.32	Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 G...	[more]
P26509	7.9e-08	32.54	Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=...	[more]
P27644	7.9e-08	29.70	Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1	[more]
P20041	1.0e-07	36.52	Polygalacturonase OS=Ralstonia solanacearum OX=305 GN=pglA PE=1 SV=1	[more]

BLAST of Cp4.1LG05g10660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035281.1	9.08e-149	100.00	putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023533571.1	4.24e-147	100.00	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]
XP_022946971.1	1.21e-146	99.52	probable polygalacturonase [Cucurbita moschata]	[more]
XP_023007164.1	1.25e-146	99.52	probable polygalacturonase [Cucurbita maxima]	[more]
TYK02072.1	1.43e-135	88.52	putative polygalacturonase [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG05g10660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G526	5.85e-147	99.52	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111450990 PE=3 SV...	[more]
A0A6J1L474	6.05e-147	99.52	probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111499740 PE=3 SV=1	[more]
A0A5D3BTE0	6.95e-136	88.52	Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0LJW9	4.47e-134	89.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334510 PE=3 SV=1	[more]
A0A6J1DQZ6	1.09e-133	87.56	probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111023522 PE=3 S...	[more]

BLAST of Cp4.1LG05g10660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33440.1	3.7e-85	71.36	Pectin lyase-like superfamily protein	[more]
AT4G23820.1	4.4e-54	48.57	Pectin lyase-like superfamily protein	[more]
AT3G62110.1	1.3e-53	51.28	Pectin lyase-like superfamily protein	[more]
AT5G41870.1	3.1e-52	46.31	Pectin lyase-like superfamily protein	[more]
AT4G23500.1	2.2e-45	43.78	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 135..169 e-value: 3800.0 score: 3.1 coord: 39..61 e-value: 4800.0 score: 2.3 coord: 5..37 e-value: 410.0 score: 9.7 coord: 67..88 e-value: 24.0 score: 13.9
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 2..188 e-value: 7.0E-46 score: 158.9
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 4..186 e-value: 1.1E-19 score: 70.7
None	No IPR available	PANTHER	PTHR31339:SF4	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 3..210
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 3..210
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 3..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g10660.1	Cp4.1LG05g10660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004650	polygalacturonase activity