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Cp4.1LG05g10590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGGAAAGGGCATTTCATTCATTGTCGTCCCCTTGCCATAAACAGCCAGAACCCATTTTGGATCCATCGTTTCTAGAGAGCTCAAGAAGATCGAAAGGCAATAATGGAAAGAATCGACAGAAAGTCATCCATTGAGAACGAGCCAAGAACTCTCAAAATGCACCAAATCCAATTTGCAAGAGTAAGAAGAACACAACACTTAATCATGCTTTCTTTCTTCTCTACTTTAAATCATTCATTCTTTTGATTCAATTTTGCCATGAATTTCAGGAAGCAGCTCTGTATGTGATAAACACAAGCAGCATAGAAGAAGCAATGAGGATTTTCACAGAGGTAATTAATTAATTAATGAATCAGGTATAAAAGAGAATGCTTAAGATGTAAATCTAACGATGTGGGAAATGCATGCAGGGATTAGAAGCAGTGGAGTGTAAAGCGATTGAAGATAGAGATTCAAGCATGCAAAATTGCTGCCATGAAGAAGAAGTCGATGAGTTACCATCTTTTTATCGGCTTCCAGACATCGTTTCTGCCCCTTTTTAGGTCACTTTTTTCTTAAAAAATCATAGTTTTTGTAAATAAATATATGATATGTATACTTTTAAGGTCTCAAGGATGGAGTTTTGAGTTTCAACCATCCTCATCCACCTTTAATG TTGGAAAGGGCATTTCATTCATTGTCGTCCCCTTGCCATAAACAGCCAGAACCCATTTTGGATCCATCGTTTCTAGAGAGCTCAAGAAGATCGAAAGGCAATAATGGAAAGAATCGACAGAAAGTCATCCATTGAGAACGAGCCAAGAACTCTCAAAATGCACCAAATCCAATTTGCAAGAGAAGCAGCTCTGTATGTGATAAACACAAGCAGCATAGAAGAAGCAATGAGGATTTTCACAGAGGGATTAGAAGCAGTGGAGTGTAAAGCGATTGAAGATAGAGATTCAAGCATGCAAAATTGCTGCCATGAAGAAGAAGTCGATGAGTTACCATCTTTTTATCGGCTTCCAGACATCGTTTCTGCCCCTTTTTAGGTCACTTTTTTCTTAAAAAATCATAGTTTTTGTAAATAAATATATGATATGTATACTTTTAAGGTCTCAAGGATGGAGTTTTGAGTTTCAACCATCCTCATCCACCTTTAATG ATGGAAAGAATCGACAGAAAGTCATCCATTGAGAACGAGCCAAGAACTCTCAAAATGCACCAAATCCAATTTGCAAGAGAAGCAGCTCTGTATGTGATAAACACAAGCAGCATAGAAGAAGCAATGAGGATTTTCACAGAGGGATTAGAAGCAGTGGAGTGTAAAGCGATTGAAGATAGAGATTCAAGCATGCAAAATTGCTGCCATGAAGAAGAAGTCGATGAGTTACCATCTTTTTATCGGCTTCCAGACATCGTTTCTGCCCCTTTTTAG MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKAIEDRDSSMQNCCHEEEVDELPSFYRLPDIVSAPF Homology
BLAST of Cp4.1LG05g10590 vs. NCBI nr
Match: XP_022947894.1 (uncharacterized protein LOC111451648 [Cucurbita moschata]) HSP 1 Score: 177 bits (450), Expect = 4.92e-56 Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. NCBI nr
Match: KAG6605318.1 (hypothetical protein SDJN03_02635, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035274.1 hypothetical protein SDJN02_02069 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 177 bits (449), Expect = 6.99e-56 Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. NCBI nr
Match: XP_038902606.1 (uncharacterized protein LOC120089256 [Benincasa hispida]) HSP 1 Score: 135 bits (341), Expect = 2.09e-39 Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 hypothetical protein SDJN02_27917, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 132 bits (331), Expect = 7.21e-38 Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. NCBI nr
Match: XP_011649401.1 (uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_006615 [Cucumis sativus]) HSP 1 Score: 131 bits (329), Expect = 1.50e-37 Identity = 69/89 (77.53%), Postives = 80/89 (89.89%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. ExPASy TrEMBL
Match: A0A6J1G887 (uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC111451648 PE=4 SV=1) HSP 1 Score: 177 bits (450), Expect = 2.38e-56 Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. ExPASy TrEMBL
Match: A0A0A0LQ89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1) HSP 1 Score: 131 bits (329), Expect = 7.26e-38 Identity = 69/89 (77.53%), Postives = 80/89 (89.89%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. ExPASy TrEMBL
Match: A0A1S3CDH2 (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1) HSP 1 Score: 130 bits (328), Expect = 1.03e-37 Identity = 68/89 (76.40%), Postives = 79/89 (88.76%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. ExPASy TrEMBL
Match: A0A6J1DBC1 (uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018915 PE=4 SV=1) HSP 1 Score: 123 bits (308), Expect = 1.34e-34 Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. ExPASy TrEMBL
Match: A0A498HZX3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029888 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 3.23e-21 Identity = 53/92 (57.61%), Postives = 60/92 (65.22%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. TAIR 10
Match: AT4G33467.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 60.8 bits (146), Expect = 6.3e-10 Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0
BLAST of Cp4.1LG05g10590 vs. TAIR 10
Match: AT4G33467.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09 Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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