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Cp4.1LG05g10500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAACCATCCATGGATATTGAATTAGGAATTTTTTGAAACGAGTCACAAAGTCACACGACCTTGGAATTTAGTAAATACCAAGATCGGTTATGTTATACAGCTAAAATGATATATATATATATATATTTTTTTTTTGTGGTTGCCTCCTTCCCAATCAATCGATCAGCCTGAGTTGACTCCCGAGTTAAGGGCGGGCTCGGCACGGGTCGGCATTTTCAATCGAAGTTCCATTTTCTTAATCGATTACCTTCACCACCACAAATAATAGAAAAGAAATCAAGATCAGGGAGGTCTCCAAATTCTTTGTTTCTTTTTTCCTCCTCACTGGACGCTTCATCAATTTCTATTAGATTGTGGCATTTGGGTATTAAATCTGATCCGTTTTAACGTCATGCTATGCGTAATTTCGTTGTGATTTGTTGAAATCTGTTTCTGGCACCGATATTGCCCTTTTCATATGCTGTTTTGATTTATACGAATCCGGGTTTTATTTTATTTGTTTAGGTACGTGATCTGGAAGCGATCTTATTTTGAAAATTGTTGATTGAGTTGGACCCGTTGGAGGGCGGATTCGATGGATTCGACGTCGAATCAAACCGAGTTTGATTACTTGTTCAAATTGTTGATGATTGGGGATTCGGGGGTTGGGAAAAGTAGTCTGCTGTTGAGTTTCACTTCCGATAGCTTCGAGGATCTCTCACCTACAATCGGTCAGTTCTTAAAGAGTTATTTTGCACTTTTCCCTTTTGATTTTGTGGGATCTTATTCATTTTGTTGAAAATGAGCTGTGACAAATTGGTTTATCATTTTTAAGAACAATGTCGATAGATCATGAAATGCTGCTAATGCTGAAGTTTCACTCCACCTTCTGCATGGAGGAGTTGAGATTGAAAACAAACAAATGAAATGGAAGGGAAAATTTAGAGGACCAATGTTAAGAAAAAGGAACAAGAGCAGAATGAAGCTCTAAGATGATCAAGTTTGTGTGTCATTTTTTAGGACAGTTTAAGGACTTTAGCTTTAATCATATCTGGAAAGCTAAATATGAGAAGTCATAAAGAGCTAATTTGTATATCAATGTCTAATGGAAAATCATTGTTTTCGAGTAATGTAAGGTTAGTTCTTATTCCTTTGTATTCTCAATTCGTTTTTGTTGAAATAGCTTTGTAGTACTATGACAATGGCTTTATTATTGGCATTTAATCAATGGCTAATTGTAATATGTTCTGTTTTCTAGTTTGCAACTTTTCAAACATCAATCAATGTTCTTTGTCAAAAGAATATGCACTGTATCATTTCTAGCAGCTCAATTATCACTGGTCATTTAGAGTTGAATTTCTACATAATCTGTGCCCTGTGATGGCAGGATAGCTATCAGATAAATAGAAACCAATTCTAATTAAATGATTGTTATTTTTTATGCGTAGGCGTCGATTTTAAGGTAAAGTATGTTACTGCTGGGGGTAAGAAGCTGAAACTTGCAATTTGGGATACAGGTAATTAAGCTTGTCCATGTACATAATTTTCGTAGCATTCTTCTGTTCTTTCGTCTTCCTGCATTTTCTTTCTTGAGAGGGCATCTGTTCTATTTCTCACACATGTTAAAGGTATTTGTTTTTGCAAAGAAGCACGGAACGGATGTATAATATGAGTAATTTACCAGAAGATATTGTACAAGTAATATGGTTGCTAAGAATAGGCAGGCAGCTGTACAGTATACTAAATTATAAATACATTGAGGCCTATCCCTTTGCATAGCTTGGTTTTTCTTCAGCAGCACAAAAGTTCATTTTGTACTTACACGCCCTTATCATGAACCCGATGAGTGCTGGAACACATATTTCAGTTGTGTCGACTGTAGAAGTTAGAATGGGGCCCCAATGGAAGCGGGGCCTTTTTCTTTGATAATAGGGGGAGAAGGAGGAAAGGCACGGAAATAGGATGTCTAGGGGATCTCCCTAGTCCCAGAGTGGGAGTGATCCATACTATGAGGCATTAAATGAATGGATGACCGTAATAAATTTAATTAATCAAAAAATAAATATAGATGACGAAAATGCTTGTTAACATTGACCATAAATATGATGTGGTTCTGCTTTATAGATCAATTCAACATGAATGAACTCTGCATGTTCATGTAAAGCTTTGTTGAACCTACAGCCTACTAGAGCTATTTCATCGAGATTATAAACTTGTTCATAATAATGTTCGAACCAAATTTGAATATTGATTTAACAGACTAAAGAATTGCACAAATGGTCAGGCTTATTCTAATTCTCAATTGTTGTCTAATGGTTTTAGTGCTGTCAATTATAAAGATGATATGGTCGTTCTTGTTCATTAGCCGTGACTTTTTCGATGGTACTAGAGCATTAGTTCTTATATGTTTCTTGTACTGAATTTGCATGAAAGAAATCTAGTTTACCACTAACTCAATATTCAATCATACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGTGCCCAAGGGATCATTATGGGTGTGTTCTAATTCCTCTTTTTATGTGATTCTTCCTAACTAAGTATATATCTTACATATGCGTAGTTTAAACATTATACATGATTTACGAAATTGTAAGTTTGCTTGTTCTTCTGTCCAATATTTTGCAATTCTTGATTATGACATAGAAGGGCAACTGTGACAGTTTATGATGTAACGCGGAGAGAGACATTTACAAACCTGACTGAGGTATGGGCGAGGGAAATAGACCTATATTCAACAAATCCAGAGTGCATAAAGATGCTTGTTGGAAACAAAGTTGATAAGGTATGCGTCTTCAACTTCTATTTGAAATTTTCCATACGCTTGAGGCAGGTTACTGTAACAATTGTGTAGATGTTGATTAATTGACCAAATGGTGAATTGAAATTCACATGCCAAAGAGGCATTTCTACGAGATCCCACATCCGTTGGTGAGGGGAATGAAACATTTCTTGTAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTCAAACCTTGAGGGGAAGCTCAAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAACGGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCCAGACACCGAGCATGTGCCAGCAAGGACATTGGGCTCTCAAGGGGGGTGGATTGTGAGATCTCACAGCGGTTGAAGAGGGGAACGAAGCATTCCTTGTAAGGGTGCGGAAACCTCTTCCTAGCAGACGCGTTTAAAAATCTTAAGGGGAAGCTAGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGCGGTGGGTTTGGGCTGTTACAATTTCAGGTTAACTATCGATAACATGTTGATAATTTAAGAATTGGTTGAGTTATGAATCGGCAAGGATTATCCATACGATTGGGTAACCAGGCTGTTAGTTACTATTAAAAAGCCTAGAAGAGTGTCAAGACACTTAATCTAGCCTATTCGAGAGGGCTGGCTCATCCCATGCGCAAAACCTATCCTGAAGTACATATTCTCAAGCTCACTTCCCGCTTACAAACTATACCAAACTCGTAATCTAACCGTCATAAGAGATACAATCTCCATTTTCCCTTCCTTTTATAGACATATAGTATCATATAGTATTAGAGGCCTAACAACCTTGGAATCCATGAACTCAAGATTTTAAATCCAGTTCCAAATAAATTTGAAGGTTGATTGGAACAATAATTTAGCTTTCGAACTGTGTTCTATTTTTTTAAAAGATGTATGATTTGCCATTAGATACTTCATCTTAGTTTTTATATCTTATTGGGAAAAAATTGAATTCAGTTGGTAAAATGAAGGCCAATATCTTTTTTTCCTTTACAAATCCATGTAATATCTTCTCTTATTCCAAACTTAAACGGCAATATTGAACATTCTGAATTTCGTTTTAGTTCCTAACTATAGAATTCAATTGATTTCTTAACTACGAAGGAGAAGAAAATTCTATGGCTTAACCTGGTTAGGGATTCAGACTCAGTTCTGACCTTATTTTTGTTAGCTTTTCTTGGTGTAGATTTTATCATATGGTTCATCCATTCTTAGTGCCAAATGGACAACCTTTCTGTAATTTCCATGGTGTTTTTTGGCTTTCATCCCCTCTTTGTGTAATTTCATTCTATCAATGAAGTCATTTGTTTCTAGTTAAAAAAAAAAAATTGTTTCTTACAAAAATGAAATCCTTGTGTTTGAATGTTTTGTTCAAATACTCGATGTGGGATTCTTGTAATCACTTCTCATATTGTTCTTCATTGTTTGCATCTAACTTAATCTTTTTCAGGAAAGTTATAGAACAGTAACAAAGAAAGAGGGAATTGAGCTGGCCAGGGAACACGGTTGTCTTTTTATCGAATGCAGTGCCAAAACTCGAGTCAATGTACAACAGTGCTTTGAAGAACTTGTTCTAAAGGTAAGAATATGAGTTTAGTACCACCACTTTTAATTCATCTTCTGGGCAAAGGATTCATAATTGGTTAGTAACTATCAGGAACGTGTTATTTCTCCGTTGTAACAATCATCATGTCTGATATTTTTCGAAAGAAAAAGGCGGCCACGTATGAGATTTTTAAAACCTCTTGTAAAGTCATGTTTGAATAAGGGTATCTTGAACTTAAACTGAATTCTGCATGGACGATGAAACGCGATAATATCGAGTCTTATATGCAGATTCTCGAGACGCCGAGCCTTTTATCTGAAGGGTCTAAAGGAGTGAGAAAGAACATCTTCAAGGAAAGGCCTCCACAGCTTGATGCATCCACAAGCAGTTGTTGCTGAAATTTGATTCATTTGCTGGTTATTTTCCCAAGTTATTTGTAAAACTATAGTAGAAAAGCATGGTGTTACAGTTTTATTATAATATCTCTCACAAATTCTGTTACAAATTGAAGGGGGTCTTATCTTCGTGCTGGCTTTCTTTCTTGTACAGGCAAAAGTTCAAAATTGGAAATATAAGACTTCATGATTTCGTGTGTA CAAACCATCCATGGATATTGAATTAGGAATTTTTTGAAACGAGTCACAAAGTCACACGACCTTGGAATTTAGTAAATACCAAGATCGGTTATGTTATACAGCTAAAATGATATATATATATATATATTTTTTTTTTGTGGTTGCCTCCTTCCCAATCAATCGATCAGCCTGAGTTGACTCCCGAGTTAAGGGCGGGCTCGGCACGGGTCGGCATTTTCAATCGAAGTTCCATTTTCTTAATCGATTACCTTCACCACCACAAATAATAGAAAAGAAATCAAGATCAGGGAGGTCTCCAAATTCTTTGTTTCTTTTTTCCTCCTCACTGGACGCTTCATCAATTTCTATTAGATTGTGGCATTTGGGTACGTGATCTGGAAGCGATCTTATTTTGAAAATTGTTGATTGAGTTGGACCCGTTGGAGGGCGGATTCGATGGATTCGACGTCGAATCAAACCGAGTTTGATTACTTGTTCAAATTGTTGATGATTGGGGATTCGGGGGTTGGGAAAAGTAGTCTGCTGTTGAGTTTCACTTCCGATAGCTTCGAGGATCTCTCACCTACAATCGGCGTCGATTTTAAGGTAAAGTATGTTACTGCTGGGGGTAAGAAGCTGAAACTTGCAATTTGGGATACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGTGCCCAAGGGATCATTATGGGTGAAAGTTATAGAACAGTAACAAAGAAAGAGGGAATTGAGCTGGCCAGGGAACACGGTTGTCTTTTTATCGAATGCAGTGCCAAAACTCGAGTCAATGTACAACAGTGCTTTGAAGAACTTGTTCTAAAGATTCTCGAGACGCCGAGCCTTTTATCTGAAGGGTCTAAAGGAGTGAGAAAGAACATCTTCAAGGAAAGGCCTCCACAGCTTGATGCATCCACAAGCAGTTGTTGCTGAAATTTGATTCATTTGCTGGTTATTTTCCCAAGTTATTTGTAAAACTATAGTAGAAAAGCATGGTGTTACAGTTTTATTATAATATCTCTCACAAATTCTGTTACAAATTGAAGGGGGTCTTATCTTCGTGCTGGCTTTCTTTCTTGTACAGGCAAAAGTTCAAAATTGGAAATATAAGACTTCATGATTTCGTGTGTA ATGGATTCGACGTCGAATCAAACCGAGTTTGATTACTTGTTCAAATTGTTGATGATTGGGGATTCGGGGGTTGGGAAAAGTAGTCTGCTGTTGAGTTTCACTTCCGATAGCTTCGAGGATCTCTCACCTACAATCGGCGTCGATTTTAAGGTAAAGTATGTTACTGCTGGGGGTAAGAAGCTGAAACTTGCAATTTGGGATACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGTGCCCAAGGGATCATTATGGGTGAAAGTTATAGAACAGTAACAAAGAAAGAGGGAATTGAGCTGGCCAGGGAACACGGTTGTCTTTTTATCGAATGCAGTGCCAAAACTCGAGTCAATGTACAACAGTGCTTTGAAGAACTTGTTCTAAAGATTCTCGAGACGCCGAGCCTTTTATCTGAAGGGTCTAAAGGAGTGAGAAAGAACATCTTCAAGGAAAGGCCTCCACAGCTTGATGCATCCACAAGCAGTTGTTGCTGA MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMGESYRTVTKKEGIELAREHGCLFIECSAKTRVNVQQCFEELVLKILETPSLLSEGSKGVRKNIFKERPPQLDASTSSCC Homology
BLAST of Cp4.1LG05g10500 vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 2.3e-66 Identity = 134/209 (64.11%), Postives = 152/209 (72.73%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 2.4e-55 Identity = 113/209 (54.07%), Postives = 138/209 (66.03%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 6.9e-47 Identity = 105/209 (50.24%), Postives = 127/209 (60.77%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy Swiss-Prot
Match: P36862 (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 1.0e-37 Identity = 89/179 (49.72%), Postives = 107/179 (59.78%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy Swiss-Prot
Match: Q05976 (Ras-related protein Rab-18A OS=Lymnaea stagnalis OX=6523 GN=RAB18A PE=2 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 7.9e-35 Identity = 88/174 (50.57%), Postives = 106/174 (60.92%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. NCBI nr
Match: XP_023534648.1 (ras-related protein RABC1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 315 bits (808), Expect = 1.73e-107 Identity = 168/209 (80.38%), Postives = 168/209 (80.38%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. NCBI nr
Match: XP_022948144.1 (ras-related protein RABC1-like [Cucurbita moschata] >KAG7035285.1 Ras-related protein RABC1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 313 bits (802), Expect = 1.42e-106 Identity = 167/209 (79.90%), Postives = 167/209 (79.90%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. NCBI nr
Match: XP_023007246.1 (ras-related protein RABC1-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 312 bits (799), Expect = 4.07e-106 Identity = 166/209 (79.43%), Postives = 167/209 (79.90%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. NCBI nr
Match: XP_004147350.1 (ras-related protein RABC1 [Cucumis sativus] >KGN62201.1 hypothetical protein Csa_016939 [Cucumis sativus]) HSP 1 Score: 302 bits (774), Expect = 2.62e-102 Identity = 159/209 (76.08%), Postives = 166/209 (79.43%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. NCBI nr
Match: XP_038901438.1 (ras-related protein RABC1-like [Benincasa hispida]) HSP 1 Score: 302 bits (774), Expect = 2.62e-102 Identity = 159/209 (76.08%), Postives = 167/209 (79.90%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy TrEMBL
Match: A0A6J1G907 (ras-related protein RABC1-like OS=Cucurbita moschata OX=3662 GN=LOC111451809 PE=4 SV=1) HSP 1 Score: 313 bits (802), Expect = 6.88e-107 Identity = 167/209 (79.90%), Postives = 167/209 (79.90%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy TrEMBL
Match: A0A6J1L007 (ras-related protein RABC1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499789 PE=4 SV=1) HSP 1 Score: 312 bits (799), Expect = 1.97e-106 Identity = 166/209 (79.43%), Postives = 167/209 (79.90%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy TrEMBL
Match: A0A5D3BQN6 (Ras-related protein RABC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00560 PE=4 SV=1) HSP 1 Score: 302 bits (774), Expect = 1.27e-102 Identity = 159/209 (76.08%), Postives = 166/209 (79.43%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy TrEMBL
Match: A0A0A0LQC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334520 PE=4 SV=1) HSP 1 Score: 302 bits (774), Expect = 1.27e-102 Identity = 159/209 (76.08%), Postives = 166/209 (79.43%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. ExPASy TrEMBL
Match: A0A1S3CDH6 (ras-related protein RABC1-like OS=Cucumis melo OX=3656 GN=LOC103499629 PE=4 SV=1) HSP 1 Score: 302 bits (774), Expect = 1.27e-102 Identity = 159/209 (76.08%), Postives = 166/209 (79.43%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 ) HSP 1 Score: 253.1 bits (645), Expect = 1.6e-67 Identity = 134/209 (64.11%), Postives = 152/209 (72.73%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. TAIR 10
Match: AT1G43890.2 (RAB GTPASE HOMOLOG B18 ) HSP 1 Score: 253.1 bits (645), Expect = 1.6e-67 Identity = 134/209 (64.11%), Postives = 152/209 (72.73%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. TAIR 10
Match: AT1G43890.3 (RAB GTPASE HOMOLOG B18 ) HSP 1 Score: 253.1 bits (645), Expect = 1.6e-67 Identity = 134/209 (64.11%), Postives = 152/209 (72.73%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. TAIR 10
Match: AT5G03530.1 (RAB GTPase homolog C2A ) HSP 1 Score: 216.5 bits (550), Expect = 1.7e-56 Identity = 113/209 (54.07%), Postives = 138/209 (66.03%), Query Frame = 0
BLAST of Cp4.1LG05g10500 vs. TAIR 10
Match: AT3G09910.1 (RAB GTPase homolog C2B ) HSP 1 Score: 188.3 bits (477), Expect = 4.9e-48 Identity = 105/209 (50.24%), Postives = 127/209 (60.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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