Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTGGTCGATCCATCAGTTGGACGTGTATTAATATGGATCGTTACTTTCGTTCTCTTCTTCTCGGTTCTCAGCGGCGGTGGATGTCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCATTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCACAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGTCAATCAAAGGCAAAGCAATTCATCGTCAAACGGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACGATGGCGTCGTAA
mRNA sequence
ATGTCTTTGGTCGATCCATCAGTTGGACGTGTATTAATATGGATCGTTACTTTCGTTCTCTTCTTCTCGGTTCTCAGCGGCGGTGGATGTCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCATTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCACAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGTCAATCAAAGGCAAAGCAATTCATCGTCAAACGGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACGATGGCGTCGTAA
Coding sequence (CDS)
ATGTCTTTGGTCGATCCATCAGTTGGACGTGTATTAATATGGATCGTTACTTTCGTTCTCTTCTTCTCGGTTCTCAGCGGCGGTGGATGTCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCATTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCACAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGTCAATCAAAGGCAAAGCAATTCATCGTCAAACGGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACGATGGCGTCGTAA
Protein sequence
MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFFWFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQRQSNSSSNGSGASRESEKPLAITMAS
Homology
BLAST of Cp4.1LG05g10420 vs. NCBI nr
Match:
XP_023533092.1 (uncharacterized protein LOC111795084 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 278 bits (711), Expect = 4.72e-94
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ 120
WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ
Sbjct: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ 120
Query: 121 RQSNSSSNGSGASRESEKPLAITMAS 146
RQSNSSSNGSGASRESEKPLAITMAS
Sbjct: 121 RQSNSSSNGSGASRESEKPLAITMAS 146
BLAST of Cp4.1LG05g10420 vs. NCBI nr
Match:
XP_022947828.1 (uncharacterized protein LOC111451588 [Cucurbita moschata])
HSP 1 Score: 268 bits (686), Expect = 3.06e-90
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLVDPS+GRVLIWIVTF+LF SVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1 MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ 120
WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKED NQ
Sbjct: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120
Query: 121 RQSNSSSNGSGASRESEKPLAITMAS 146
RQSNSSSN SGASRESEKPLAITM S
Sbjct: 121 RQSNSSSNSSGASRESEKPLAITMGS 146
BLAST of Cp4.1LG05g10420 vs. NCBI nr
Match:
KAG7035293.1 (hypothetical protein SDJN02_02088, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 264 bits (674), Expect = 2.07e-88
Identity = 139/146 (95.21%), Postives = 140/146 (95.89%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLVDPS+GRVLIWIVTFVLF SVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1 MSLVDPSIGRVLIWIVTFVLFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ 120
WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNT NESPQSDAGCQANKED NQ
Sbjct: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTRNESPQSDAGCQANKEDSNQ 120
Query: 121 RQSNSSSNGSGASRESEKPLAITMAS 146
RQSNSSSN SGASRESEKPLAIT S
Sbjct: 121 RQSNSSSNSSGASRESEKPLAITTGS 146
BLAST of Cp4.1LG05g10420 vs. NCBI nr
Match:
KAG6605337.1 (hypothetical protein SDJN03_02654, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 259 bits (663), Expect = 9.84e-87
Identity = 138/146 (94.52%), Postives = 139/146 (95.21%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLVDPS+GRVLIWIVTFVLF SVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1 MSLVDPSIGRVLIWIVTFVLFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ 120
WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNT NESPQSDAG QANKED NQ
Sbjct: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTRNESPQSDAGSQANKEDGNQ 120
Query: 121 RQSNSSSNGSGASRESEKPLAITMAS 146
RQSNSSSN SGASRESEKPLAIT S
Sbjct: 121 RQSNSSSNSSGASRESEKPLAITTGS 146
BLAST of Cp4.1LG05g10420 vs. NCBI nr
Match:
XP_038900833.1 (uncharacterized protein LOC120087896 [Benincasa hispida])
HSP 1 Score: 183 bits (464), Expect = 2.39e-56
Identity = 103/151 (68.21%), Postives = 118/151 (78.15%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLV+PS GR IWIVT LFFS++SGGGCLLMY+ LPETE TAWLPVAGLSLVCLPWFF
Sbjct: 1 MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVN--EDAAATNNENADNNTHNESPQSDAGCQANKEDV 120
W LTF YR+ISRACGFRVS+G+ V+ D A NN N +NN ESP+ D G + ++ED
Sbjct: 61 WLLTFFYRVISRACGFRVSIGIGVDVGADNANANNNNNNNNASAESPRHDGGDRVDEEDD 120
Query: 121 N---QRQSNSSSNGSGASRESEKPLAITMAS 146
+ QR+SNSSSN S ASRESE PLAITM S
Sbjct: 121 DNGDQRRSNSSSNNSIASRESEMPLAITMGS 151
BLAST of Cp4.1LG05g10420 vs. ExPASy TrEMBL
Match:
A0A6J1G7P7 (uncharacterized protein LOC111451588 OS=Cucurbita moschata OX=3662 GN=LOC111451588 PE=4 SV=1)
HSP 1 Score: 268 bits (686), Expect = 1.48e-90
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLVDPS+GRVLIWIVTF+LF SVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1 MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ 120
WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKED NQ
Sbjct: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120
Query: 121 RQSNSSSNGSGASRESEKPLAITMAS 146
RQSNSSSN SGASRESEKPLAITM S
Sbjct: 121 RQSNSSSNSSGASRESEKPLAITMGS 146
BLAST of Cp4.1LG05g10420 vs. ExPASy TrEMBL
Match:
A0A0A0LJX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1)
HSP 1 Score: 177 bits (448), Expect = 3.05e-54
Identity = 101/153 (66.01%), Postives = 117/153 (76.47%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLV+PS GR IWIVT LFFS+LSGGGCLLMY+ LPETE TAWLP+ GLSLVCLPWFF
Sbjct: 1 MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN-----ESPQSDAGCQANK 120
W LTF YR++SRACGFRVSLG+ + ++NN NA+NN +N ES Q D G + N+
Sbjct: 61 WLLTFFYRVLSRACGFRVSLGIGAD---VSSNNANANNNNNNNASSAESAQQDVGERDNE 120
Query: 121 EDVN--QRQSNSSSNGSGASRESEKPLAITMAS 146
++ N QR SNSSSN S SRESE PLAITMAS
Sbjct: 121 DNNNADQRHSNSSSNNSIVSRESEMPLAITMAS 150
BLAST of Cp4.1LG05g10420 vs. ExPASy TrEMBL
Match:
A0A1S3CDW9 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1)
HSP 1 Score: 174 bits (442), Expect = 2.57e-53
Identity = 99/153 (64.71%), Postives = 118/153 (77.12%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLV+PS GR IWIVT LFFS++SGGGCLLMY+ LPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1 MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATN-NENADNNTHN----ESPQSDAGCQANK 120
W LTF YR+ISRACG+RVSLG ED N N+N +NN +N ESP+ D G + N+
Sbjct: 61 WLLTFFYRVISRACGYRVSLG--TGEDVGTNNVNDNNNNNNNNASSAESPRQDVGERGNE 120
Query: 121 ED--VNQRQSNSSSNGSGASRESEKPLAITMAS 146
++ V+QR+SNSSSN S SRESE PLAITMAS
Sbjct: 121 DNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151
BLAST of Cp4.1LG05g10420 vs. ExPASy TrEMBL
Match:
A0A5A7TCV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00470 PE=4 SV=1)
HSP 1 Score: 173 bits (438), Expect = 1.04e-52
Identity = 98/154 (63.64%), Postives = 117/154 (75.97%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLV+PS GR IWIVT LFFS++SGGGCLLMY+ LPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1 MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN------ESPQSDAGCQAN 120
W LTF YR+ISRACG+RVSLG + TNN N +NN +N ESP+ D G + N
Sbjct: 61 WLLTFFYRVISRACGYRVSLGTGAD---VGTNNVNDNNNNNNNNASSAESPRQDVGERGN 120
Query: 121 KED--VNQRQSNSSSNGSGASRESEKPLAITMAS 146
+++ V+QR+SNSSSN S SRESE PLAITMAS
Sbjct: 121 EDNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151
BLAST of Cp4.1LG05g10420 vs. ExPASy TrEMBL
Match:
A0A6J1EV39 (uncharacterized protein LOC111438319 OS=Cucurbita moschata OX=3662 GN=LOC111438319 PE=4 SV=1)
HSP 1 Score: 166 bits (421), Expect = 3.65e-50
Identity = 92/148 (62.16%), Postives = 109/148 (73.65%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
MSLVDPS GR +W V F LF +LSGG CLL+YI LPETE+TAWLPVAGLSLVCLPWFF
Sbjct: 1 MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVN- 120
W LTF YR+ISRACGFRVSL + + + ++ N +NN+ ESP+ DA QA ++ N
Sbjct: 61 WILTFFYRVISRACGFRVSLAMATSANDTNDDDNNNNNNSSGESPRCDARAQAEEDGNND 120
Query: 121 -QRQSNSSSNGSGASRESEKPLAITMAS 146
QR+SN SSN S SRESE P AI+M S
Sbjct: 121 DQRRSNLSSNNSIMSRESEIPFAISMGS 148
BLAST of Cp4.1LG05g10420 vs. TAIR 10
Match:
AT4G30770.1 (Putative membrane lipoprotein )
HSP 1 Score: 88.2 bits (217), Expect = 6.0e-18
Identity = 65/164 (39.63%), Postives = 87/164 (53.05%), Query Frame = 0
Query: 1 MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
M + DP G+ I ++T LF S+ GGGCL+ Y LP WL G+ VCLPWFF
Sbjct: 1 MPVPDPRAGQAFICLITLFLFLSIAVGGGCLIAYTILPYP--PVWLSYLGIVFVCLPWFF 60
Query: 61 WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN--------ESPQSD---- 120
W LTF YRI+SR GFR+ +G NN N + T + ESP D
Sbjct: 61 WILTFAYRIVSRTFGFRMVVG-----SGGNNNNANGETMTRDLDPPEQSLESPDDDDPEP 120
Query: 121 -AGCQAN-----KEDVNQRQSNSSSNGSGASRESEKPLAITMAS 147
A Q + + ++++ ++SSN + AS ESE PLAI+MAS
Sbjct: 121 IAHPQGQVLVSIEGNQSKKRMSTSSNSTIASHESEMPLAISMAS 157
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_023533092.1 | 4.72e-94 | 100.00 | uncharacterized protein LOC111795084 [Cucurbita pepo subsp. pepo] | [more] |
XP_022947828.1 | 3.06e-90 | 95.89 | uncharacterized protein LOC111451588 [Cucurbita moschata] | [more] |
KAG7035293.1 | 2.07e-88 | 95.21 | hypothetical protein SDJN02_02088, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6605337.1 | 9.84e-87 | 94.52 | hypothetical protein SDJN03_02654, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_038900833.1 | 2.39e-56 | 68.21 | uncharacterized protein LOC120087896 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1G7P7 | 1.48e-90 | 95.89 | uncharacterized protein LOC111451588 OS=Cucurbita moschata OX=3662 GN=LOC1114515... | [more] |
A0A0A0LJX6 | 3.05e-54 | 66.01 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1 | [more] |
A0A1S3CDW9 | 2.57e-53 | 64.71 | Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1 | [more] |
A0A5A7TCV0 | 1.04e-52 | 63.64 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6J1EV39 | 3.65e-50 | 62.16 | uncharacterized protein LOC111438319 OS=Cucurbita moschata OX=3662 GN=LOC1114383... | [more] |
Match Name | E-value | Identity | Description | |
AT4G30770.1 | 6.0e-18 | 39.63 | Putative membrane lipoprotein | [more] |