![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Cp4.1LG05g10160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTTCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGAGCACTTTCGCTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGACGTTCTTCGCCGGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGGTAATCGTTAGGTTTCCGAGCTTCTTCCACATTTCGTTTGTCTTCAATTTCTGAAATCCGGCTTGATGTACATTGCTGTTCTAATTTAGGTATGAATTGATCGATACATCAGGGGTTAGGTTTTTAAAAATTGTCGATGTCCATGGAAATCTAGTGAAATTGTATGTATGTATTTTTCGAAGTCGAGATGTTTATGTTTAATCACGAAATTGATCCTAATTTGTTGTGCTTCGTTGGTTTGCCCTATTTCGTTCTTGAAATTTTGGGATTGTGGAAGTGAAGCTCACTGGTTTTATGATCGTTTCAATGCAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCAAATATCACCAGGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTAAGCTACTTGCTTTCATTTTGCATTATTCACTCTGCTTTGCAAGATTACATTATAAATAAAGGGCGTGGATCCAAAACTACAACCTTAGTTAGGAATAGGGGCATAAACACTAAAGCTCAAGTTCCATTTGCGTCATTTGCATTGGTATATGTAGTTCTTGCTGCTCATTGGCTTGGATACTTTATCATGGAAAGTTCGATCATCTTGAGGCGTAGTAGATTACAAAAAAAGAAGATGCTACATGTGAGATCCCACATCGGTTAGGGAGGAGCAAGACTTCACTCCATAGCAAACAGTTTTAAAAACCTCGAGGGAAAGTTCAAAGAGGACAATATCTAGTAGCAGTAGGCTTGGGTTGTTACAAATCGTATCATAGTTAGACACTGGACAATATGCCAGCGAGGAGGTTGAGCCTTGAAGGGGGTGGACACGAGGCAGTATGGCAGCAAAAATGTTGGGCCCTGAAGGGGGGTGGATTGGAGGGTCCCACATTGATTGGATAAGGGAACAAGTGCCAGCGAGCCCCGAATGGGGTGGACACGAGGTGGTGTGCTAGCAAGGACGCTGGGTCCCAGAGGGGTGGATTGGGGTTTCACATCGATTGGATAAGGGAACGAGTGCCAACGAAGAAACTAGGTCCCCAATGGGGGATGGATTGTGAAATCTCACATCGGTGGTTGGGGAGGAGAACGAAGCATTATTTATAAGGATGTGGAAACCTCTCTCCAGCAAACGCGTTTTAAAAACAATTGGCTAGCGGTGGGCAAACAATTGGGTAGATAACAAATTTTGAAGGACTACTGGAGGCTTGAATATAATCAACAGTTGCAATGCATCTTAATTTTATAGTGCTTTGTTATTTGCATATGCTGACAGAACAACATTTACTCCCATCTTGTTTCTATAGATGCTTTTTGGATTCCTAGTTTCTATAGATGCTGTAATGCAAACTTACCTTGTTGAGAAGTTGTTTAGCAACAGCAACTGAAACTCATTTATGTTTAATAACCTCATTGTAAAAGGCCTCGTGTTCGATATGAAATCCTATATCGTGGGCGAAGTTAAATGTTTACAATTACTACAAAAGGAGCTCGAAACTCAAATACTCCTGCAACAATGTCTTTGTTCGACAACCCATTTTAGTCCTTTCTTTTGTTGATATGTGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGAGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAACTGTAA ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTTCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGAGCACTTTCGCTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGACGTTCTTCGCCGGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCAAATATCACCAGGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGAGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAACTGTAA ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTTCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGAGCACTTTCGCTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGACGTTCTTCGCCGGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCAAATATCACCAGGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGAGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAACTGTAA MLGTVNLVMGSSSAAMLTSTQCTSMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFASRRSSPAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKTEAEAKL Homology
BLAST of Cp4.1LG05g10160 vs. ExPASy Swiss-Prot
Match: P72777 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13 Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. ExPASy Swiss-Prot
Match: P51204 (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.1e-11 Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. ExPASy Swiss-Prot
Match: Q1XDT3 (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 9.9e-09 Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: XP_023533874.1 (uncharacterized protein LOC111795592 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 438 bits (1126), Expect = 1.00e-154 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: XP_022947359.1 (uncharacterized protein LOC111451246 [Cucurbita moschata]) HSP 1 Score: 419 bits (1077), Expect = 3.55e-147 Identity = 218/230 (94.78%), Postives = 222/230 (96.52%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: KAG6605371.1 (putative protein ycf54, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 418 bits (1074), Expect = 1.02e-146 Identity = 217/230 (94.35%), Postives = 222/230 (96.52%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: XP_023007237.1 (uncharacterized protein LOC111499783 [Cucurbita maxima]) HSP 1 Score: 389 bits (1000), Expect = 1.61e-135 Identity = 205/226 (90.71%), Postives = 213/226 (94.25%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: XP_022149576.1 (uncharacterized protein LOC111017973 [Momordica charantia]) HSP 1 Score: 351 bits (900), Expect = 3.54e-120 Identity = 183/231 (79.22%), Postives = 201/231 (87.01%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. ExPASy TrEMBL
Match: A0A6J1G6K2 (uncharacterized protein LOC111451246 OS=Cucurbita moschata OX=3662 GN=LOC111451246 PE=4 SV=1) HSP 1 Score: 419 bits (1077), Expect = 1.72e-147 Identity = 218/230 (94.78%), Postives = 222/230 (96.52%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. ExPASy TrEMBL
Match: A0A6J1KY44 (uncharacterized protein LOC111499783 OS=Cucurbita maxima OX=3661 GN=LOC111499783 PE=4 SV=1) HSP 1 Score: 389 bits (1000), Expect = 7.81e-136 Identity = 205/226 (90.71%), Postives = 213/226 (94.25%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. ExPASy TrEMBL
Match: A0A6J1D8T3 (uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017973 PE=4 SV=1) HSP 1 Score: 351 bits (900), Expect = 1.71e-120 Identity = 183/231 (79.22%), Postives = 201/231 (87.01%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. ExPASy TrEMBL
Match: A0A6J1FW50 (uncharacterized protein LOC111449035 OS=Cucurbita moschata OX=3662 GN=LOC111449035 PE=4 SV=1) HSP 1 Score: 343 bits (880), Expect = 1.90e-117 Identity = 184/232 (79.31%), Postives = 200/232 (86.21%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. ExPASy TrEMBL
Match: A0A6J1JCP0 (uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525 PE=4 SV=1) HSP 1 Score: 342 bits (878), Expect = 3.97e-117 Identity = 183/232 (78.88%), Postives = 199/232 (85.78%), Query Frame = 0
BLAST of Cp4.1LG05g10160 vs. TAIR 10
Match: AT5G58250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 221.5 bits (563), Expect = 7.0e-58 Identity = 120/204 (58.82%), Postives = 143/204 (70.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|