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Cp4.1LG05g10080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAATAAGAACAGCGAAAGCGGACGGGGAGCTTTATCTCCATTTTCATCCACACAAACCACGGCCATGGCATCTGTGCATAGCTTCAACCTTCTCTTAATTCCTCAGCCATGGCTTCCTTTCGTTCTCCTATCCTCATTGTCCTTCTTCATTCCAATTCCTTTTCGCTAATAAACCCACACCATGCCTCCTCTAGCCTCCATGCTTAATGGAGCTGCACTAGCGCCGTCGCTCCATCTTCATCCAAGGCGGCTCCGTCCACCGACCTCGGCTGCGACGCTGCAGGTGATCGGGCGGAGGACCAGATTCGGTACCGGCAAAGGCAGGGCAGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTGAAATTCGACCTAGGTCAGTGGCTATCGGATGTGGAGGAACACAAAGCCCTAGCGATTTACTCGCCGCACGAAGGCGGCTACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCACGCGGCCTCGGTGATCCTGAGACCACTCTCACCAAGATTCACCCCGTTTGCCCTGTCCGTTCAATCGAATCCCTACGGCTAATTCAATTTTTTTCCCCCTAGGGTTTGTTCGATTGATCTTACTTCGGCTTCGAATTGCAGGCTCATTTAGGGAAGCAGCCAATCGCTCGGTGGTATTTCCCACCGGAAGTCGATTACAGGCTCGAGGCTCTGCCGCCGAACGCCAAGGGACTGGTGGTGTGGATAATCGAGGCTAAGGTGAGATTCTTAAATCTGCCATTAACGATTTCAGAATCAATTACGGAATTGAAAACACTGTTCAGGTTCTGTCGAAGGCGGAGTTGCAGTTCCTTGCTCTGCTGCCGACTCTCCGGCCAAAAGTCCGAGTCATCGCGGAGTGCGGGAACTGGTAGCTTTCTTCTCTGCTATCTCCATTTTCAACCAAACATATATATATATATATAGATATAAGCTGAAAGATTGAGTTTGGCGTTGCTGCAGGAGGAAGTTCATGTGGAAGCCGCTCAAGGAGATCGCAGGAGGAGCTTAAGAACACCATAAACAAGAATAATACAGCTTCTTCCTTTTTTCTTCCTCTTTTTTTCAATGAATTAATTCAATTTCTTGGTAAAAACGACGAAGAAGATGATGGTGTTTTACCATTTAGGGTTAAATTATGATTATTATGCAAATATTATTACTTCATAAAATGATTTATTACATATTTTAAGATCTTTAAACTCACCGATACACCACGAACTTGCATGTTGCATGCCAACAAGAACTTGCATGTTGCATGCCAACAAGAACTTGCATGTTGCATGTCAACAACGGCTGAACTAACTAATTAAATTATGTACTATACTTGCAGGATTCAGGATTCAAATCATAATCGAGGTACATGTCAATTCTTGATCGTTGATCATACTCATTTACCACATTAGAATAATCAAAAACTGCCTTCCAACTACAAATGGTTTATCAAATCCTCACACCATCCAAATTATAATTGATTAAAGATGAAGAAAATCACACACAGCTTACAGTTTTGCTTCTGCTTCTGTTTTTGTCACTGGCGGCAAGAAAATCTCCCACCATCCATATTCATACTTGGGGTAGGGAGCCTCCCATTTTTCGGGCTTCTCAAACTCGATGTTGGTCGGGTTAGAAGCCAATGCTTGTTCTAAGCTATCGGCTTCGTAGCTTTCGGCTAAAACTCGGTCCAGTCTCAGCTTCATGAACCTGCACATATCAACAAAAGAAAGGACTAAAATGGGTTGTCGAACAAAGACATTGTTGCAGGAGTATTTGAGTTTCGAGCTCCTTTTGTAGTAATTGTAAACATTTAACTTCGCCCACGATATAGGATTTCATATCGAACACGAGGCCTTTTACAATGAGGTTATTAAACATAAATGAGTTTCAGTTGCTGTTGCTAAACAACTTCTCAACAAGGTAAGTTTGCATTACAGCATCTATAGAAACTAGGAATCCAAAAAGCATCTATAGAAACAAGATGGGAGTAAATGTTGTTCTGTCAGCATATGCAAATAACAAAGCACTATAAAATTAAGATGCATT AAAATAAGAACAGCGAAAGCGGACGGGGAGCTTTATCTCCATTTTCATCCACACAAACCACGGCCATGGCATCTGTGCATAGCTTCAACCTTCTCTTAATTCCTCAGCCATGGCTTCCTTTCGTTCTCCTATCCTCATTGTCCTTCTTCATTCCAATTCCTTTTCGCTAATAAACCCACACCATGCCTCCTCTAGCCTCCATGCTTAATGGAGCTGCACTAGCGCCGTCGCTCCATCTTCATCCAAGGCGGCTCCGTCCACCGACCTCGGCTGCGACGCTGCAGGTGATCGGGCGGAGGACCAGATTCGGTACCGGCAAAGGCAGGGCAGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTGAAATTCGACCTAGGTCAGTGGCTATCGGATGTGGAGGAACACAAAGCCCTAGCGATTTACTCGCCGCACGAAGGCGGCTACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCACGCGGCCTCGGTGATCCTGAGACCACTCTCACCAAGATTCACCCCGTTTGCCCTGCTCATTTAGGGAAGCAGCCAATCGCTCGGTGGTATTTCCCACCGGAAGTCGATTACAGGCTCGAGGCTCTGCCGCCGAACGCCAAGGGACTGGTGGTGTGGATAATCGAGGCTAAGGTTCTGTCGAAGGCGGAGTTGCAGTTCCTTGCTCTGCTGCCGACTCTCCGGCCAAAAGTCCGAGTCATCGCGGAGTGCGGGAACTGGAGGAAGTTCATGTGGAAGCCGCTCAAGGAGATCGCAGGAGGAGCTTAAGAACACCATAAACAAGAATAATACAGCTTCTTCCTTTTTTCTTCCTCTTTTTTTCAATGAATTAATTCAATTTCTTGGTAAAAACGACGAAGAAGATGATGGTGTTTTACCATTTAGGGTTAAATTATGATTATTATGCAAATATTATTACTTCATAAAATGATTTATTACATATTTTAAGATCTTTAAACTCACCGATACACCACGAACTTGCATGTTGCATGCCAACAAGAACTTGCATGTTGCATGCCAACAAGAACTTGCATGTTGCATGTCAACAACGGCTGAACTAACTAATTAAATTATGTACTATACTTGCAGGATTCAGGATTCAAATCATAATCGAGGTACATGTCAATTCTTGATCGTTGATCATACTCATTTACCACATTAGAATAATCAAAAACTGCCTTCCAACTACAAATGGTTTATCAAATCCTCACACCATCCAAATTATAATTGATTAAAGATGAAGAAAATCACACACAGCTTACAGTTTTGCTTCTGCTTCTGTTTTTGTCACTGGCGGCAAGAAAATCTCCCACCATCCATATTCATACTTGGGGTAGGGAGCCTCCCATTTTTCGGGCTTCTCAAACTCGATGTTGGTCGGGTTAGAAGCCAATGCTTGTTCTAAGCTATCGGCTTCGTAGCTTTCGGCTAAAACTCGGTCCAGTCTCAGCTTCATGAACCTGCACATATCAACAAAAGAAAGGACTAAAATGGGTTGTCGAACAAAGACATTGTTGCAGGAGTATTTGAGTTTCGAGCTCCTTTTGTAGTAATTGTAAACATTTAACTTCGCCCACGATATAGGATTTCATATCGAACACGAGGCCTTTTACAATGAGGTTATTAAACATAAATGAGTTTCAGTTGCTGTTGCTAAACAACTTCTCAACAAGGTAAGTTTGCATTACAGCATCTATAGAAACTAGGAATCCAAAAAGCATCTATAGAAACAAGATGGGAGTAAATGTTGTTCTGTCAGCATATGCAAATAACAAAGCACTATAAAATTAAGATGCATT ATGCCTCCTCTAGCCTCCATGCTTAATGGAGCTGCACTAGCGCCGTCGCTCCATCTTCATCCAAGGCGGCTCCGTCCACCGACCTCGGCTGCGACGCTGCAGGTGATCGGGCGGAGGACCAGATTCGGTACCGGCAAAGGCAGGGCAGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTGAAATTCGACCTAGGTCAGTGGCTATCGGATGTGGAGGAACACAAAGCCCTAGCGATTTACTCGCCGCACGAAGGCGGCTACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCACGCGGCCTCGGTGATCCTGAGACCACTCTCACCAAGATTCACCCCGTTTGCCCTGCTCATTTAGGGAAGCAGCCAATCGCTCGGTGGTATTTCCCACCGGAAGTCGATTACAGGCTCGAGGCTCTGCCGCCGAACGCCAAGGGACTGGTGGTGTGGATAATCGAGGCTAAGGTTCTGTCGAAGGCGGAGTTGCAGTTCCTTGCTCTGCTGCCGACTCTCCGGCCAAAAGTCCGAGTCATCGCGGAGTGCGGGAACTGGAGGAAGTTCATGTGGAAGCCGCTCAAGGAGATCGCAGGAGGAGCTTAA MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGGA Homology
BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: Q9LVM2 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhN PE=2 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 3.3e-78 Identity = 141/197 (71.57%), Postives = 164/197 (83.25%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: B8HUU1 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=ndhN PE=3 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 9.1e-36 Identity = 73/150 (48.67%), Postives = 100/150 (66.67%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: B7JYJ3 (NAD(P)H-quinone oxidoreductase subunit N OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=ndhN PE=3 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 5.0e-34 Identity = 69/141 (48.94%), Postives = 95/141 (67.38%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: Q31L05 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=ndhN PE=3 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 5.5e-33 Identity = 74/150 (49.33%), Postives = 92/150 (61.33%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy Swiss-Prot
Match: Q5N0W6 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=ndhN PE=3 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 5.5e-33 Identity = 74/150 (49.33%), Postives = 92/150 (61.33%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: XP_023533875.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 444 bits (1142), Expect = 1.82e-157 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: XP_022947360.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita moschata]) HSP 1 Score: 443 bits (1139), Expect = 5.23e-157 Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: XP_023007243.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita maxima]) HSP 1 Score: 438 bits (1127), Expect = 3.54e-155 Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: KAG6605370.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035327.1 NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 437 bits (1125), Expect = 6.88e-155 Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. NCBI nr
Match: XP_008456262.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis melo]) HSP 1 Score: 390 bits (1002), Expect = 3.90e-136 Identity = 191/214 (89.25%), Postives = 195/214 (91.12%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A6J1G6N3 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451247 PE=4 SV=1) HSP 1 Score: 443 bits (1139), Expect = 2.53e-157 Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A6J1L763 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499786 PE=4 SV=1) HSP 1 Score: 438 bits (1127), Expect = 1.71e-155 Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A1S3C430 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496258 PE=4 SV=1) HSP 1 Score: 390 bits (1002), Expect = 1.89e-136 Identity = 191/214 (89.25%), Postives = 195/214 (91.12%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A0A0KEC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133810 PE=4 SV=1) HSP 1 Score: 389 bits (998), Expect = 7.68e-136 Identity = 191/214 (89.25%), Postives = 193/214 (90.19%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. ExPASy TrEMBL
Match: A0A5A7SWJ9 (NAD(P)H-quinone oxidoreductase subunit N OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00760 PE=4 SV=1) HSP 1 Score: 362 bits (930), Expect = 1.33e-125 Identity = 178/201 (88.56%), Postives = 182/201 (90.55%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. TAIR 10
Match: AT5G58260.1 (oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor ) HSP 1 Score: 292.7 bits (748), Expect = 2.4e-79 Identity = 141/197 (71.57%), Postives = 164/197 (83.25%), Query Frame = 0
BLAST of Cp4.1LG05g10080 vs. TAIR 10
Match: AT5G58260.2 (oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor ) HSP 1 Score: 219.5 bits (558), Expect = 2.5e-57 Identity = 106/157 (67.52%), Postives = 126/157 (80.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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