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Cp4.1LG05g09900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTAGATTTGATCCGGATCGTCCATTTGAGCGGCCATGTGGAGGAAATTGCCCATCCCATCACCGCCGGCGAGGTTCTCAAAGCCAACCCAAATCATGTTCTTAGTAAGCCTTCTTCACAAGGAGTCGTTCGCCGGATTCTCATTCTCTCCCCGGAATCAGAGCTCAAAAGGGGTAGTATTTATTTCTTGATTCCGGCCACTTCCTTGCCGGAGAAGAAAAAAAACGGCGGCAACACCTTCAAAAATTCGTCAAAAAAAACCAAAAACTCTACCGCCGCCGTCCCCGTTGACACAACCTCCTACCTCTCCGATATTGTCTCCGACAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCAGCCGCGTCGTTGTATGGCGGCCGCATTTAGAGAGCATCTCTGAAGACTAA ATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTAGATTTGATCCGGATCGTCCATTTGAGCGGCCATGTGGAGGAAATTGCCCATCCCATCACCGCCGGCGAGGTTCTCAAAGCCAACCCAAATCATGTTCTTAGTAAGCCTTCTTCACAAGGAGTCGTTCGCCGGATTCTCATTCTCTCCCCGGAATCAGAGCTCAAAAGGGGTAGTATTTATTTCTTGATTCCGGCCACTTCCTTGCCGGAGAAGAAAAAAAACGGCGGCAACACCTTCAAAAATTCGTCAAAAAAAACCAAAAACTCTACCGCCGCCGTCCCCGTTGACACAACCTCCTACCTCTCCGATATTGTCTCCGACAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCAGCCGCGTCGTTGTATGGCGGCCGCATTTAGAGAGCATCTCTGAAGACTAA ATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTAGATTTGATCCGGATCGTCCATTTGAGCGGCCATGTGGAGGAAATTGCCCATCCCATCACCGCCGGCGAGGTTCTCAAAGCCAACCCAAATCATGTTCTTAGTAAGCCTTCTTCACAAGGAGTCGTTCGCCGGATTCTCATTCTCTCCCCGGAATCAGAGCTCAAAAGGGGTAGTATTTATTTCTTGATTCCGGCCACTTCCTTGCCGGAGAAGAAAAAAAACGGCGGCAACACCTTCAAAAATTCGTCAAAAAAAACCAAAAACTCTACCGCCGCCGTCCCCGTTGACACAACCTCCTACCTCTCCGATATTGTCTCCGACAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCAGCCGCGTCGTTGTATGGCGGCCGCATTTAGAGAGCATCTCTGAAGACTAA MGNSLRCCLACVLPCGALDLIRIVHLSGHVEEIAHPITAGEVLKANPNHVLSKPSSQGVVRRILILSPESELKRGSIYFLIPATSLPEKKKNGGNTFKNSSKKTKNSTAAVPVDTTSYLSDIVSDKKPSRRDRRGGSRVVVWRPHLESISED Homology
BLAST of Cp4.1LG05g09900 vs. NCBI nr
Match: XP_023534513.1 (uncharacterized protein LOC111796057 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 301 bits (772), Expect = 3.68e-103 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. NCBI nr
Match: XP_022947823.1 (uncharacterized protein LOC111451584 [Cucurbita moschata] >KAG6605391.1 hypothetical protein SDJN03_02708, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 297 bits (761), Expect = 1.75e-101 Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. NCBI nr
Match: XP_023007260.1 (uncharacterized protein LOC111499799 [Cucurbita maxima]) HSP 1 Score: 296 bits (758), Expect = 5.03e-101 Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. NCBI nr
Match: XP_008463824.1 (PREDICTED: uncharacterized protein LOC103501874 [Cucumis melo] >KAA0057142.1 6,7-dimethyl-8-ribityllumazine synthase [Cucumis melo var. makuwa] >TYK24172.1 6,7-dimethyl-8-ribityllumazine synthase [Cucumis melo var. makuwa]) HSP 1 Score: 259 bits (662), Expect = 2.50e-86 Identity = 132/156 (84.62%), Postives = 141/156 (90.38%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. NCBI nr
Match: XP_004149378.1 (uncharacterized protein LOC101207122 [Cucumis sativus] >KGN47230.1 hypothetical protein Csa_017034 [Cucumis sativus]) HSP 1 Score: 256 bits (653), Expect = 5.50e-85 Identity = 133/155 (85.81%), Postives = 141/155 (90.97%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. ExPASy TrEMBL
Match: A0A6J1G7P3 (uncharacterized protein LOC111451584 OS=Cucurbita moschata OX=3662 GN=LOC111451584 PE=4 SV=1) HSP 1 Score: 297 bits (761), Expect = 8.49e-102 Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. ExPASy TrEMBL
Match: A0A6J1L2H4 (uncharacterized protein LOC111499799 OS=Cucurbita maxima OX=3661 GN=LOC111499799 PE=4 SV=1) HSP 1 Score: 296 bits (758), Expect = 2.44e-101 Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. ExPASy TrEMBL
Match: A0A5A7UMR0 (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold55219G00010 PE=4 SV=1) HSP 1 Score: 259 bits (662), Expect = 1.21e-86 Identity = 132/156 (84.62%), Postives = 141/156 (90.38%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. ExPASy TrEMBL
Match: A0A1S3CK32 (uncharacterized protein LOC103501874 OS=Cucumis melo OX=3656 GN=LOC103501874 PE=4 SV=1) HSP 1 Score: 259 bits (662), Expect = 1.21e-86 Identity = 132/156 (84.62%), Postives = 141/156 (90.38%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. ExPASy TrEMBL
Match: A0A0A0KBY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G217470 PE=4 SV=1) HSP 1 Score: 256 bits (653), Expect = 2.66e-85 Identity = 133/155 (85.81%), Postives = 141/155 (90.97%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 183.0 bits (463), Expect = 1.9e-46 Identity = 105/175 (60.00%), Postives = 118/175 (67.43%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 175.6 bits (444), Expect = 3.0e-44 Identity = 101/167 (60.48%), Postives = 115/167 (68.86%), Query Frame = 0
BLAST of Cp4.1LG05g09900 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 138.7 bits (348), Expect = 4.0e-33 Identity = 83/189 (43.92%), Postives = 114/189 (60.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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