Cp4.1LG05g09570 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g09570
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Mitochondrial 28S Ribosomal protein
Location	Cp4.1LG05: 6195538 .. 6198077 (-)
RNA-Seq Expression	Cp4.1LG05g09570
Synteny	Cp4.1LG05g09570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAGGGAGGGATTATAATTGTAAATATGTAAATTGAAAGGGTAGAAAAGCAATACACAAAAACTCCCCATTTTCACTTAGTACCGGAGAGGAGCAACCAAACCTAGAGAGAGAGAGACGCCAATGGCGGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCTTCGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAACCTCTTCTTCGGATCCCAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTAATTCAGTTTTTACCCAATTGGGGGGTAGGATACCATGTCGCCAAGGGTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGGTCTGTCTCCATCTGGTTCTGTTTCTTGGATTTGGATGCTGGTTCGTTTGCGATTATTTTCCCTCTATAATCTTCGGAAATTTTGGAAAGGAACTATATACATTTTCTGCTGGTGGTTATCATTTCTTATGTGCATTTAATCAAATAGACGGATTGAGGGGTTTAAAAGGTTGTGATTCGGGTAAAAAATTAAGCGGGATTGTGTAGTTTCTTTAATCATTTGCTGAACTTCATAGAATTTTAGAGTTTGGAGGCGTTTGACATTTCCCTCTTAACTATTGATAATCAAACAGGAAGCTTAACAATCTGTTTACTTTCGGGACATTAGGATTCAGGGTTTAAGCTTTTCCTTTGACTTTCTCTACAGAATGGCACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGTTAGAGTTTCTATATCACTAAATTTAGTTCCTTAATCGTTGTTGGAATTTCATTTTTGTTTTTATCACGTTGCTGGGATTTTGTTCGAATATTTGTTTAGAAGAATGAGAATTCATACATACTTAGAATCTCTTACATGATCTTTGTGCCTAGGCTAAATTCTATAATTTGGGACGATGACATCAAGAGTTCATGCTTTATAGCTAATTTAGATGCGTGATTGGGAAAGATGAAAGTTAGAACGTTATGTTAGGAATCATGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGTTTTGCTTTGGGCTTCCTCAAAAGGCCTCATACCAAAGAAGATGTATTCCTTTACTTATAAACCTATGATCATTCTCTAAATTAGCCAATGTAGGACTCACTCCCAACAATCCTCACTAATCCTTCCCTCGAACAAAGTACACCATAAGCCTCTGAGGCTTATGGAGCTCTCGAACAGCCACACTTTAGTCACTTTTTTACTACACCTTCGAGGCTCACAATCTTTGTTCGATATTTGAGGATTTTATTGTTATGGCTAAGTTTAAGGCATGACTCTGATACTATGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCATTTTGAGCATAAGCTCCCATGACTTTGCTTTGGGCTTCCCCGAAAGGCCTCATACCAATTGAGATTTATTCCTTTACTTATAAACCTATGATCATTCTCTAAATTAGCCAATGTGAGACTCACTCCCAACAATCCTCAACACGTTATAGTTCACTGTTTATTAATAGGATTATACTTCATGACAATTTAGTTACTTTGTTCTATTATAAATAGTCTGCAAGCATTCAAGTTTAGAGACATGAGGTCCTGAAAGGCTTAAGATGGAGTTTGGTTTAGCACGTTTGCCCTTTAGGCCTCTAGATTTGGTCCCTTTTGAAGTCTCTAACAAGGCGACTGTAGACTTAGCGATCGACATAGCCAACGATTATGTTACTTACAAATGAGGATTAAAATTTGGGTATCTACAAACTTGTATTTCTGTATGTTATTGTTGCTTTGTGCAAGTTATTTCCATCAACGATGGAGGTTGACAAAAATTGGTTCCAGGCGCGCCCATTGCAGAAGCTCCGAAGAAGATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGCTTGCCAAGATCATCAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAGCAACCCATCAGCTGAGGCTCAAACTTCATGAGACTGCAGAGAAATTTAAGCTGCTGATTCTTTTTGGCCTACCTTATTTCCAAGTTCACAGAGTTCTAATTCTCTCTATATTAGCAGTCCTTAAATGTAGTCAGGTTTCCTAACGTCATCATATGAGGAGCATTTTGAGCTTTTTGCTTGTTTCCGAGATAAAAGAAAGATCAATCATCCCGAACTGTGTAAGCTAGAACTCGTTTCCTATTCTCAGTTTCTACTGGATTTTTATGTTAAATAGGTTGAAGAATCTAGTTGGTATTTGTTAATCTTTGTTCTTCGTCCTGCTGTCAGACGAACATAAAAAAAGCTGTGAGACGAACATAGAAAAAATACTCGTGAACATGTCCTTTGGTTTAAAATTACTTTATGAAGTAGAAATTTATTAGAATATTGGATGAAAAGTTGATGTAACAGTAACTTAAAACGGTGCAGTCACTGATTAGGACTTT

mRNA sequence

TAATAGGGAGGGATTATAATTGTAAATATGTAAATTGAAAGGGTAGAAAAGCAATACACAAAAACTCCCCATTTTCACTTAGTACCGGAGAGGAGCAACCAAACCTAGAGAGAGAGAGACGCCAATGGCGGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCTTCGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAACCTCTTCTTCGGATCCCAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTAATTCAGTTTTTACCCAATTGGGGGGTAGGATACCATGTCGCCAAGGGTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGAATGGCACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGCGCGCCCATTGCAGAAGCTCCGAAGAAGATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGCTTGCCAAGATCATCAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAGCAACCCATCAGCTGAGGCTCAAACTTCATGAGACTGCAGAGAAATTTAAGCTGCTGATTCTTTTTGGCCTACCTTATTTCCAAGTTCACAGAGTTCTAATTCTCTCTATATTAGCAGTCCTTAAATGTAGTCAGGTTTCCTAACGTCATCATATGAGGAGCATTTTGAGCTTTTTGCTTGTTTCCGAGATAAAAGAAAGATCAATCATCCCGAACTGTGTAAGCTAGAACTCGTTTCCTATTCTCAGTTTCTACTGGATTTTTATGTTAAATAGGTTGAAGAATCTAGTTGGTATTTGTTAATCTTTGTTCTTCGTCCTGCTGTCAGACGAACATAAAAAAAGCTGTGAGACGAACATAGAAAAAATACTCGTGAACATGTCCTTTGGTTTAAAATTACTTTATGAAGTAGAAATTTATTAGAATATTGGATGAAAAGTTGATGTAACAGTAACTTAAAACGGTGCAGTCACTGATTAGGACTTT

Coding sequence (CDS)

ATGGCGGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCTTCGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAACCTCTTCTTCGGATCCCAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTAATTCAGTTTTTACCCAATTGGGGGGTAGGATACCATGTCGCCAAGGGTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGAATGGCACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGCGCGCCCATTGCAGAAGCTCCGAAGAAGATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGCTTGCCAAGATCATCAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAGCAACCCATCAGCTGAGGCTCAAACTTCATGA

Protein sequence

MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS

Homology

[Close]

BLAST of Cp4.1LG05g09570 vs. NCBI nr
Match: XP_023532313.1 (uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313 bits (801), Expect = 1.88e-107
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS
Sbjct: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156

[Close]

BLAST of Cp4.1LG05g09570 vs. NCBI nr
Match: XP_022947647.1 (uncharacterized protein LOC111451448 [Cucurbita moschata])

HSP 1 Score: 307 bits (787), Expect = 2.57e-105
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYIPSLPRS ENEPTTMTNLGESNPSAE Q+S
Sbjct: 121 KRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS 156

[Close]

BLAST of Cp4.1LG05g09570 vs. NCBI nr
Match: XP_023007567.1 (uncharacterized protein LOC111500023 [Cucurbita maxima])

HSP 1 Score: 306 bits (783), Expect = 1.05e-104
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYIPSL RSSENEPTTMTNLGESNPSAE QTS
Sbjct: 121 KRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS 156

[Close]

BLAST of Cp4.1LG05g09570 vs. NCBI nr
Match: KAG6605433.1 (hypothetical protein SDJN03_02750, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035381.1 hypothetical protein SDJN02_02177 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302 bits (774), Expect = 2.47e-103
Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRTTISRALDFSRLASSFIRNFSTSTLS SSSDPSASAAASKNKRRKKKKNLFEVI
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYIPSL RS ENEPTTMTNLGESNPSAE Q+S
Sbjct: 121 KRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS 156

[Close]

BLAST of Cp4.1LG05g09570 vs. NCBI nr
Match: XP_038900676.1 (uncharacterized protein LOC120087826 [Benincasa hispida])

HSP 1 Score: 250 bits (638), Expect = 9.54e-83
Identity = 126/154 (81.82%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 3   VANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQF 62
           VANRT ISRALDFSRL+S+FIR FSTS+ STSSS+P+AS A++KNKRRKKKKNLFEV+QF
Sbjct: 4   VANRTAISRALDFSRLSSTFIRTFSTSSPSTSSSNPNASTASTKNKRRKKKKNLFEVVQF 63

Query: 63  LPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVHKR 122
           LPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWGIAHK+G PIAEAPKKISGVHKR
Sbjct: 64  LPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKDGTPIAEAPKKISGVHKR 123

Query: 123 CWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           CWKYI SLPRS           GESNPSAE QTS
Sbjct: 124 CWKYIASLPRS-----------GESNPSAEVQTS 146

[Close]

BLAST of Cp4.1LG05g09570 vs. ExPASy TrEMBL
Match: A0A6J1G714 (uncharacterized protein LOC111451448 OS=Cucurbita moschata OX=3662 GN=LOC111451448 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 1.24e-105
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYIPSLPRS ENEPTTMTNLGESNPSAE Q+S
Sbjct: 121 KRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS 156

[Close]

BLAST of Cp4.1LG05g09570 vs. ExPASy TrEMBL
Match: A0A6J1KZ28 (uncharacterized protein LOC111500023 OS=Cucurbita maxima OX=3661 GN=LOC111500023 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 5.07e-105
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYIPSL RSSENEPTTMTNLGESNPSAE QTS
Sbjct: 121 KRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS 156

[Close]

BLAST of Cp4.1LG05g09570 vs. ExPASy TrEMBL
Match: A0A5A7V0Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00360 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 1.43e-79
Identity = 123/156 (78.85%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRT ISRALDFSRL+SSFIR F++S+ STSSS+P+AS ++S+ KRRKKKKNLFEVI
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWGIAHKNG PI EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGMPIVEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYI SLPR           LGES  SAE QTS
Sbjct: 121 KRCWKYIASLPR-----------LGESKTSAEVQTS 145

[Close]

BLAST of Cp4.1LG05g09570 vs. ExPASy TrEMBL
Match: A0A1S3CKN2 (uncharacterized protein LOC103502049 OS=Cucumis melo OX=3656 GN=LOC103502049 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 1.43e-79
Identity = 123/156 (78.85%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRT ISRALDFSRL+SSFIR F++S+ STSSS+P+AS ++S+ KRRKKKKNLFEVI
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWGIAHKNG PI EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGMPIVEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYI SLPR           LGES  SAE QTS
Sbjct: 121 KRCWKYIASLPR-----------LGESKTSAEVQTS 145

[Close]

BLAST of Cp4.1LG05g09570 vs. ExPASy TrEMBL
Match: A0A0A0KH76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188090 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 8.27e-79
Identity = 121/156 (77.56%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60
           MAVANRT ISRALDFSRL+SSF+R FS+S+ STSSS+P+AS  +S+ KRRKKKKNLFEV+
Sbjct: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60

Query: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120
           QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWGIAHKNG PI EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120

Query: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156
           KRCWKYI SLP S           GES  SAE QTS
Sbjct: 121 KRCWKYIASLPHS-----------GESKTSAEVQTS 145

[Close]

BLAST of Cp4.1LG05g09570 vs. TAIR 10
Match: AT5G58990.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 158.3 bits (399), Expect = 5.0e-39
Identity = 76/125 (60.80%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 18  LASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHW 77
           L+ S +RNFS +  + S+      ++ S   +R+KKKNL EV QFLPNWG+GYH+AK HW
Sbjct: 21  LSLSLLRNFSAAPSAASTPASENPSSDSNKPKRRKKKNLIEVAQFLPNWGIGYHMAKAHW 80

Query: 78  DEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSSENE 137
           + ISY+ITKINLYK+G HGKAWGI HK+G   AEAPKKISGVHKRCWKYIP+L   S+  
Sbjct: 81  NGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKISGVHKRCWKYIPNL---SKTT 140

Query: 138 PTTMT 143
           P T T
Sbjct: 141 PATTT 142

[Close]

BLAST of Cp4.1LG05g09570 vs. TAIR 10
Match: AT5G52370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-38
Identity = 81/134 (60.45%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 7   TTISRALDFS------RLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 66
           T I+RA+  +      RL+ + +RNFS +  S + S  S     SK KRR KKKNL EV 
Sbjct: 4   TLINRAISRTETVGAFRLSLNLLRNFSAAPASENPSSDS-----SKPKRR-KKKNLIEVA 63

Query: 67  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 126
           QFLPNWG+GYH+AK HW+ ISY+ITKINLYK+G HGKAWGI HK+G   AEAPKKISGVH
Sbjct: 64  QFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKISGVH 123

Query: 127 KRCWKYIPSLPRSS 135
           KRCWKYIP+L +++
Sbjct: 124 KRCWKYIPNLSKTA 131

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g09570 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g09570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532313.1	1.88e-107	100.00	uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]	[more]
XP_022947647.1	2.57e-105	98.08	uncharacterized protein LOC111451448 [Cucurbita moschata]	[more]
XP_023007567.1	1.05e-104	98.08	uncharacterized protein LOC111500023 [Cucurbita maxima]	[more]
KAG6605433.1	2.47e-103	96.79	hypothetical protein SDJN03_02750, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038900676.1	9.54e-83	81.82	uncharacterized protein LOC120087826 [Benincasa hispida]	[more]

BLAST of Cp4.1LG05g09570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G714	1.24e-105	98.08	uncharacterized protein LOC111451448 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]
A0A6J1KZ28	5.07e-105	98.08	uncharacterized protein LOC111500023 OS=Cucurbita maxima OX=3661 GN=LOC111500023...	[more]
A0A5A7V0Y6	1.43e-79	78.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKN2	1.43e-79	78.85	uncharacterized protein LOC103502049 OS=Cucumis melo OX=3656 GN=LOC103502049 PE=...	[more]
A0A0A0KH76	8.27e-79	77.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188090 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g09570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58990.1	5.0e-39	60.80	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G52370.1	1.9e-38	60.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032053	Mitochondrial 28S ribosomal protein S34	PFAM	PF16053	MRP-S34	coord: 54..129 e-value: 7.6E-12 score: 45.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..156
None	No IPR available	PANTHER	PTHR35316:SF1	28S RIBOSOMAL S34 PROTEIN	coord: 3..154
None	No IPR available	PANTHER	PTHR35316	28S RIBOSOMAL S34 PROTEIN	coord: 3..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g09570.1	Cp4.1LG05g09570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome