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Cp4.1LG05g09560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAAGCAAGAAGGAAAAGGGTATTCTTGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACCGACCCTGTTCTTCAAAAGGTTGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGTGTCTTCGGCGGTCTCTTTGCGAAGAAAGACTAA ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAAGCAAGAAGGAAAAGGGTATTCTTGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACCGACCCTGTTCTTCAAAAGGTTGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGTGTCTTCGGCGGTCTCTTTGCGAAGAAAGACTAA ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAAGCAAGAAGGAAAAGGGTATTCTTGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACCGACCCTGTTCTTCAAAAGGTTGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGTGTCTTCGGCGGTCTCTTTGCGAAGAAAGACTAA MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD Homology
BLAST of Cp4.1LG05g09560 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 184 bits (467), Expect = 1.80e-58 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. NCBI nr
Match: XP_022947653.1 (uncharacterized protein LOC111451452 [Cucurbita moschata] >XP_023007425.1 uncharacterized protein LOC111499927 [Cucurbita maxima] >KAG6605422.1 hypothetical protein SDJN03_02739, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035371.1 hypothetical protein SDJN02_02167, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 182 bits (463), Expect = 7.34e-58 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. NCBI nr
Match: KAG7010512.1 (hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 149 bits (377), Expect = 8.81e-45 Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus]) HSP 1 Score: 148 bits (374), Expect = 2.94e-44 Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa]) HSP 1 Score: 147 bits (371), Expect = 8.17e-44 Identity = 81/97 (83.51%), Postives = 88/97 (90.72%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1) HSP 1 Score: 182 bits (463), Expect = 3.55e-58 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1) HSP 1 Score: 182 bits (463), Expect = 3.55e-58 Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1) HSP 1 Score: 148 bits (374), Expect = 1.42e-44 Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1) HSP 1 Score: 147 bits (371), Expect = 3.96e-44 Identity = 81/97 (83.51%), Postives = 88/97 (90.72%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1) HSP 1 Score: 147 bits (371), Expect = 3.96e-44 Identity = 81/97 (83.51%), Postives = 88/97 (90.72%), Query Frame = 0
BLAST of Cp4.1LG05g09560 vs. TAIR 10
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.5 bits (171), Expect = 8.4e-13 Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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