Cp4.1LG05g09210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g09210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type E3 ubiquitin transferase
Location	Cp4.1LG05: 6010481 .. 6012405 (-)
RNA-Seq Expression	Cp4.1LG05g09210
Synteny	Cp4.1LG05g09210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTTTTATAACAATTTTCAATGTGGGATATGAATCAGGCGCTGCCGAATGATACCGTGAGAGCTCTGGCGTCGTTGAAGGAAGCTCTGGATTCGCCCAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCAATTGTCTGGTGCGTTTACTCCCATTGTTTGTGTGCTATCTGTTTAATTAGCGCGGTCTGTTCTGCCTTGCAATGTTGTGAATGGATGAATTTCGTTCCGATTCAGTGTTGAATCTTTAATTGTTTCGGATGTCTATTTGGCTGAGTGGAAAATGAAAAAAAATGATCGCAGATTATCTGCTATTGTGATTTTCAGAGCCTACTTTCGCTTCCATTTGTATCCGAACAAAACATTTTGCTTTATATGCTTAGGCTATAAACGATGTTTCGATGGACATCTCAACCACACTTTGCTGATGCCTTCAATTCGATTAGACGACGTTCGCATTGCAGCTGTTATCTCGTACTTGCACCTTGTATATTTACGTATGATGCTGATTACAATGTGATTCACGATTGCTCTAGATTTTACTCGTATGTAATCTAAACTTGGAATTTTGGTTTTGTGTGGGATGATATGAATTAGGTTCTGTCTAAATTTCTGCCTTTATTCTCAATTGATCATCATGATTTTGCTGAAGATTGGGAAAATGTATGTGAGACAAATCTCGGCAGCCGATCAGATTATTTCTTTTTTTATGCTCTATATATTTTTTTGTTCTAATCTGTTTTTTGATTCGAACTTCAGGCCTTGGAGAAAGAGCAAAATTTGAATCAATTTCACAGGATGACAGCAAGACTAGAGAAAGCTCTGAATGAAATTTCACATGAAGATCTTGATATATCTGATGAAGTTAAGGAGCAGGTAAAGGATTTTATCATTGCGCTTTTTGTTCTTAATATCTTTGAAATGGTTTTCTAGCTGCTCTCGACTGTTGAAAGATTATAACTTAGAATCTTTATCGATTGAATTCTGTGCCATGGAAGTAGAAGCTAAAGAATTAGGGTATAGCTTCAGACTTTCTATCAAGAGACCTGATAGTTTAAAGTATTTTGAGGTTTGAATAAGCTATTAATGTTTCATACCGCTGTTTGCATATCTAAGTCTTTCTGAGTCCAGGTTGAGCTTGTTCACTCTCAATTCAAAAGAGGTAAAGGAAGGATTGATACACAAGATGCCCTGCTGTATGTTAACCTCCACTCTCTCTATAACAACAGCAAAGGGATTGGGTGAGAAGGTGGAGGTAATGGATATAGCTGATCGTACTCAAGTGTCTCTTGCTTTACATGAAATGGTTTCAGCTAGCAATGGAGATCCAGGGGAGAAATTTGAGAAAATGTCAATTCTATTGAATAAATCATGTGGCCTTTGCTGAAGCTGGTGCAATCCCTCCCCTTGTTGGCCTCCTTTGGACAACGAACCTCCTCACTCAAGAACAGGCTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCACCTGGCACAGTCCATGAGCTGAAGTCGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTTGTCGACGAATATAAAACAACGATTGGTGCATCGGGAGACATTCCGCTGTTGAGGATTATTGGGAGTGTGTCCCGCATTGGTTAATTTAGTGAAGATCGTGGGTTTATGAGTGGGGAATACTATCTCGATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTACACTCAAAGTGGACAATATCATACCATTAGTCGATTTCATTGCAACAGGATCCCCTAGGAACAGGGAGAATGCAGCTGCAGTTTTGGTGAATCTTTGTGCAGGAGACGAGCGACATCTCGTGGAAGCAAAGAAGCCCGGAGTGACTAGTTTGCTAGTAGATTTGGCATAA

mRNA sequence

TTTTGTTTTATAACAATTTTCAATGTGGGATATGAATCAGGCGCTGCCGAATGATACCGTGAGAGCTCTGGCGTCGTTGAAGGAAGCTCTGGATTCGCCCAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCAATTGTCTGGCCTTGGAGAAAGAGCAAAATTTGAATCAATTTCACAGGATGACAGCAAGACTAGAGAAAGCTCTGAATGAAATTTCACATGAAGATCTTGATATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCACTCTCAATTCAAAAGAGGTAAAGGAAGGATTGATACACAAGATGCCCTGCTCTGGTGCAATCCCTCCCCTTGTTGGCCTCCTTTGGACAACGAACCTCCTCACTCAAGAACAGGCTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCACCTGGCACAGTCCATGAGCTGAAGTCGGGGAGTATGGAAGCACGAGACGAGCGACATCTCGTGGAAGCAAAGAAGCCCGGAGTGACTAGTTTGCTAGTAGATTTGGCATAA

Coding sequence (CDS)

ATGTGGGATATGAATCAGGCGCTGCCGAATGATACCGTGAGAGCTCTGGCGTCGTTGAAGGAAGCTCTGGATTCGCCCAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCAATTGTCTGGCCTTGGAGAAAGAGCAAAATTTGAATCAATTTCACAGGATGACAGCAAGACTAGAGAAAGCTCTGAATGAAATTTCACATGAAGATCTTGATATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCACTCTCAATTCAAAAGAGGTAAAGGAAGGATTGATACACAAGATGCCCTGCTCTGGTGCAATCCCTCCCCTTGTTGGCCTCCTTTGGACAACGAACCTCCTCACTCAAGAACAGGCTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCACCTGGCACAGTCCATGAGCTGAAGTCGGGGAGTATGGAAGCACGAGACGAGCGACATCTCGTGGAAGCAAAGAAGCCCGGAGTGACTAGTTTGCTAGTAGATTTGGCATAA

Protein sequence

MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLALEKEQNLNQFHRMTARLEKALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCNPSPCWPPLDNEPPHSRTGCDNNKRSIMSCRAAPGTVHELKSGSMEARDERHLVEAKKPGVTSLLVDLA

Homology

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy Swiss-Prot
Match: Q9SNC6 (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17
Identity = 49/111 (44.14%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 3   DMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLEKA 62
           + N+ +  DT++ L +LKEA+ S K+ L+  S+GS   L +E+EQ  ++   ++ +LE++
Sbjct: 52  ESNEPISEDTLKTLMNLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQS 111

Query: 63  LNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLW------CNPS 107
           L++I +E+LDISDEV+EQVELV SQF+R KGR+D  D  L+      CN S
Sbjct: 112 LSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKS 162

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy Swiss-Prot
Match: A2ZLU6 (Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 14  RALASLKEALDSPKELLRLGSEGSN-CLALEKEQNLNQFHRMTARLEKALNEISHEDLDI 73
           RALA L +AL++   LLRLG EGS   L LE++  + +F  +  +LE+AL +I + +LDI
Sbjct: 85  RALAPLADALEAALALLRLGREGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDI 144

Query: 74  SDEVKEQVELVHSQFKRGKGRIDTQD 99
           SDEV+EQVELVH+Q KR K RID  D
Sbjct: 145 SDEVREQVELVHAQLKRAKERIDMPD 170

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy Swiss-Prot
Match: Q0IMG9 (E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL11 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 14  RALASLKEALDSPKELLRLGSEGSN-CLALEKEQNLNQFHRMTARLEKALNEISHEDLDI 73
           RALA L +AL++   LLRLG EGS   L LE++  + +F  +  +LE+AL +I + +LDI
Sbjct: 85  RALAPLADALEAALALLRLGREGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDI 144

Query: 74  SDEVKEQVELVHSQFKRGKGRIDTQD 99
           SDEV+EQVELVH+Q KR K RID  D
Sbjct: 145 SDEVREQVELVHAQLKRAKERIDMPD 170

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy Swiss-Prot
Match: Q8VZ40 (U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 3   DMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLAL-EKEQNLNQFHRMTARLEKA 62
           D+N  L  D +    +++ ALDS  EL R  + GS    L +++  + +F  MT  +E A
Sbjct: 56  DVNVELKKDQITGFEAMRIALDSSLELFRSVNGGSKLFQLFDRDSLVEKFRDMTVEIEAA 115

Query: 63  LNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALL 102
           L++I +E +++S+EV+EQV+L+H QFKR K R +  D  L
Sbjct: 116 LSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQL 155

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy Swiss-Prot
Match: Q9ZV31 (U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 5   NQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLEKALN 64
           NQ   ++ V AL S+K++L   K+LL   S  S   L LE++Q + +F ++T+ LE+AL+
Sbjct: 54  NQESSSEVVNALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQALS 113

Query: 65  EISHEDLDISDEVKEQVELVHSQFKRGKGR 94
            I +E+L+ISDE+KEQVELV  Q +R  G+
Sbjct: 114 IIPYENLEISDELKEQVELVLVQLRRSLGK 143

[Close]

BLAST of Cp4.1LG05g09210 vs. NCBI nr
Match: XP_023532328.1 (U-box domain-containing protein 13-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202 bits (515), Expect = 3.64e-64
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLALEKEQNLNQFHRMTARLEK 60
           MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLALEKEQNLNQFHRMTARLEK
Sbjct: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLALEKEQNLNQFHRMTARLEK 60

Query: 61  ALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCN 104
           ALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALL+ N
Sbjct: 61  ALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLYVN 104

[Close]

BLAST of Cp4.1LG05g09210 vs. NCBI nr
Match: XP_023532329.1 (U-box domain-containing protein 13-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156 bits (394), Expect = 3.18e-46
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLALEKEQNLNQFHRMTARLEK 60
          MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLALEKEQNLNQFHRMTARLEK
Sbjct: 1  MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLALEKEQNLNQFHRMTARLEK 60

Query: 61 ALNEISHEDLDISDEVKEQ 79
          ALNEISHEDLDISDEVKEQ
Sbjct: 61 ALNEISHEDLDISDEVKEQ 79

[Close]

BLAST of Cp4.1LG05g09210 vs. NCBI nr
Match: KAG6605467.1 (U-box domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149 bits (377), Expect = 3.00e-41
Identity = 121/300 (40.33%), Postives = 129/300 (43.00%), Query Frame = 0


Query: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGS-NCL------------------- 60
           MWDMNQA  NDTVRALASLKEALDS KELLRLGSEGS N +                   
Sbjct: 1   MWDMNQA--NDTVRALASLKEALDSTKELLRLGSEGSKNAINNVSMDIFRFNHTLLMPSI 60

Query: 61  ------------------------------------------ALEKEQNLNQFHRMTARL 120
                                                     ALEKEQNLNQFHRMTARL
Sbjct: 61  RLDDVRIAAVISYLHLVLIYVLSKFLPLFSIDHHDFAEDWENALEKEQNLNQFHRMTARL 120

Query: 121 EKALNEISHEDLDISDEVKEQVELVHSQFKRGKG-----RIDTQDALLWCNPSPCWPPLD 172
           EKALNEISHEDLDISDEVKE+VELVHSQFKR        + +    LL            
Sbjct: 121 EKALNEISHEDLDISDEVKEKVELVHSQFKRASNGDPWEKFEKMSLLL------------ 180

[Close]

BLAST of Cp4.1LG05g09210 vs. NCBI nr
Match: XP_038901464.1 (U-box domain-containing protein 13-like [Benincasa hispida] >XP_038901465.1 U-box domain-containing protein 13-like [Benincasa hispida])

HSP 1 Score: 145 bits (367), Expect = 4.36e-37
Identity = 79/105 (75.24%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLE 60
           M D+ Q LP+DTVRALASLKEAL+S KELLR GSEGS   LAL++EQ LNQFH +TARLE
Sbjct: 51  MRDIKQPLPDDTVRALASLKEALESTKELLRQGSEGSKIYLALDREQILNQFHEVTARLE 110

Query: 61  KALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCN 104
           +ALNEISHEDLDISDEVKEQVELV SQF+R +GR DTQDA ++ N
Sbjct: 111 QALNEISHEDLDISDEVKEQVELVLSQFRRARGRNDTQDAEVYVN 155

[Close]

BLAST of Cp4.1LG05g09210 vs. NCBI nr
Match: XP_008448400.1 (PREDICTED: U-box domain-containing protein 13 [Cucumis melo] >KAA0061933.1 U-box domain-containing protein 13 [Cucumis melo var. makuwa] >TYK23996.1 U-box domain-containing protein 13 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (354), Expect = 2.76e-35
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLE 60
           M DM Q LP+DTV+ALASLKEAL+S KELLR GSEGS   LALE+E  LNQFH++TARLE
Sbjct: 51  MRDMKQPLPDDTVKALASLKEALESTKELLRHGSEGSKIYLALEREHILNQFHKVTARLE 110

Query: 61  KALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCN 104
           +ALNEISHE LDISDEVKEQV+LV SQFKR + R DTQDA L+ N
Sbjct: 111 QALNEISHEALDISDEVKEQVDLVLSQFKRARERNDTQDAELYVN 155

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy TrEMBL
Match: A0A5A7V197 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00630 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 1.34e-35
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLE 60
           M DM Q LP+DTV+ALASLKEAL+S KELLR GSEGS   LALE+E  LNQFH++TARLE
Sbjct: 51  MRDMKQPLPDDTVKALASLKEALESTKELLRHGSEGSKIYLALEREHILNQFHKVTARLE 110

Query: 61  KALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCN 104
           +ALNEISHE LDISDEVKEQV+LV SQFKR + R DTQDA L+ N
Sbjct: 111 QALNEISHEALDISDEVKEQVDLVLSQFKRARERNDTQDAELYVN 155

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy TrEMBL
Match: A0A1S3BJL0 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103490599 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 1.34e-35
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLE 60
           M DM Q LP+DTV+ALASLKEAL+S KELLR GSEGS   LALE+E  LNQFH++TARLE
Sbjct: 51  MRDMKQPLPDDTVKALASLKEALESTKELLRHGSEGSKIYLALEREHILNQFHKVTARLE 110

Query: 61  KALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCN 104
           +ALNEISHE LDISDEVKEQV+LV SQFKR + R DTQDA L+ N
Sbjct: 111 QALNEISHEALDISDEVKEQVDLVLSQFKRARERNDTQDAELYVN 155

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy TrEMBL
Match: A0A6J1D426 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111017076 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 3.50e-35
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MWDMN-QALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARL 60
           M DM  QAL + TV ALASLKEAL+S KELLRLGSEGS   LAL++EQ LN+FH +T+RL
Sbjct: 51  MRDMKKQALADATVTALASLKEALESTKELLRLGSEGSKIYLALDREQTLNKFHEVTSRL 110

Query: 61  EKALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCN 104
           E+ALNEIS++DLDISDEVKEQVELV SQFKR KGRIDTQDA L+ N
Sbjct: 111 EQALNEISYDDLDISDEVKEQVELVLSQFKRAKGRIDTQDAELYTN 156

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy TrEMBL
Match: A0A0A0KFG3 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G191020 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 2.35e-34
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLE 60
           M DM Q LP+D V+ALASLKEAL+S KELLR GSEGS   L LE+EQ LNQFH++TARLE
Sbjct: 51  MRDMKQPLPDDIVQALASLKEALESTKELLRHGSEGSKIYLGLEREQILNQFHKVTARLE 110

Query: 61  KALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCN 104
           +ALNEISHE LDISDEVKEQV+LV SQFKR + R DT+DA L+ N
Sbjct: 111 QALNEISHEALDISDEVKEQVDLVLSQFKRARERKDTEDAELYVN 155

[Close]

BLAST of Cp4.1LG05g09210 vs. ExPASy TrEMBL
Match: A0A6J1JHK3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111484439 PE=4 SV=1)

HSP 1 Score: 135 bits (339), Expect = 1.57e-33
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 1   MWDMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLE 60
           M DM QALP++TV AL SLK+A++S KELLRLG+EGS   LALE+EQ LNQF  ++ARLE
Sbjct: 51  MRDMKQALPDNTVGALVSLKKAMESTKELLRLGTEGSKIYLALEREQLLNQFQELSARLE 110

Query: 61  KALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCN 104
           +ALNEISH DLDISDEVKEQVELV SQFKR +GR D QD  L+ N
Sbjct: 111 QALNEISHVDLDISDEVKEQVELVLSQFKRARGRNDAQDVELYSN 155

[Close]

BLAST of Cp4.1LG05g09210 vs. TAIR 10
Match: AT3G46510.1 (plant U-box 13 )

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 49/111 (44.14%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 3   DMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLEKA 62
           + N+ +  DT++ L +LKEA+ S K+ L+  S+GS   L +E+EQ  ++   ++ +LE++
Sbjct: 52  ESNEPISEDTLKTLMNLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQS 111

Query: 63  LNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLW------CNPS 107
           L++I +E+LDISDEV+EQVELV SQF+R KGR+D  D  L+      CN S
Sbjct: 112 LSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKS 162

HSP 2 Score: 39.7 bits (91), Expect = 2.9e-03
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 123 CDNNKRSIMSCRAAPGTVHELKSGSMEARD 153
           C+NNK +I+S  A PG V  LK GSMEAR+
Sbjct: 424 CENNKGAIVSAGAIPGIVQVLKKGSMEARE 453

[Close]

BLAST of Cp4.1LG05g09210 vs. TAIR 10
Match: AT3G54850.1 (plant U-box 14 )

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-12
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 3   DMNQALPNDTVRALASLKEALDSPKELLRLGSEGSNCLAL-EKEQNLNQFHRMTARLEKA 62
           D+N  L  D +    +++ ALDS  EL R  + GS    L +++  + +F  MT  +E A
Sbjct: 56  DVNVELKKDQITGFEAMRIALDSSLELFRSVNGGSKLFQLFDRDSLVEKFRDMTVEIEAA 115

Query: 63  LNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALL 102
           L++I +E +++S+EV+EQV+L+H QFKR K R +  D  L
Sbjct: 116 LSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQL 155

[Close]

BLAST of Cp4.1LG05g09210 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-11
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 5   NQALPNDTVRALASLKEALDSPKELLRLGSEGSNC-LALEKEQNLNQFHRMTARLEKALN 64
           NQ   ++ V AL S+K++L   K+LL   S  S   L LE++Q + +F ++T+ LE+AL+
Sbjct: 54  NQESSSEVVNALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQALS 113

Query: 65  EISHEDLDISDEVKEQVELVHSQFKRGKGR 94
            I +E+L+ISDE+KEQVELV  Q +R  G+
Sbjct: 114 IIPYENLEISDELKEQVELVLVQLRRSLGK 143

[Close]

BLAST of Cp4.1LG05g09210 vs. TAIR 10
Match: AT1G71020.1 (ARM repeat superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-06
Identity = 31/94 (32.98%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 50  QFHRMTARLEKALNEISHEDLDISDEVKEQVELVHSQFKRGKGRIDTQDALLWCNPSPCW 109
           QF  +T +LEKAL +++++  DISDEV+EQVEL   Q +R   R  + ++  +   S   
Sbjct: 108 QFQCVTWKLEKALGDLTYDRYDISDEVREQVELARLQLRRAMQRYGSLNSKKF--SSGLS 167

Query: 110 PPLDNEPPHSRTGCDNNKRSIMSCRAAPGTVHEL 144
            P++ +         +N++ I    + P TVH L
Sbjct: 168 EPMEKD-------ASSNRKVIEKLESIPETVHSL 192

[Close]

BLAST of Cp4.1LG05g09210 vs. TAIR 10
Match: AT1G23030.1 (ARM repeat superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 10  NDTVRALASLKEALDSPKELLRLGSEGSNCLALEKEQNLNQFHRMTARLEKALNEISHED 69
           +D V  L + K  L + +   R  S+G+       ++   QF  +T +LEKAL+ + ++ 
Sbjct: 69  SDLVVGLQAAKRLLSTARFQARDSSDGA------AKRISFQFQCVTWKLEKALSNLPYDL 128

Query: 70  LDISDEVKEQVELVHSQFKRGKGR 94
            DISDEV EQVEL  SQ +R   R
Sbjct: 129 YDISDEVGEQVELARSQLRRAMQR 146

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g09210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SNC6	2.0e-17	44.14	U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1...	[more]
A2ZLU6	1.2e-14	53.49	Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=...	[more]
Q0IMG9	1.2e-14	53.49	E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SP...	[more]
Q8VZ40	2.1e-11	38.00	U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1...	[more]
Q9ZV31	4.0e-10	44.44	U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2...	[more]

BLAST of Cp4.1LG05g09210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532328.1	3.64e-64	98.08	U-box domain-containing protein 13-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023532329.1	3.18e-46	100.00	U-box domain-containing protein 13-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6605467.1	3.00e-41	40.33	U-box domain-containing protein 13, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_038901464.1	4.36e-37	75.24	U-box domain-containing protein 13-like [Benincasa hispida] >XP_038901465.1 U-bo...	[more]
XP_008448400.1	2.76e-35	74.29	PREDICTED: U-box domain-containing protein 13 [Cucumis melo] >KAA0061933.1 U-box...	[more]

BLAST of Cp4.1LG05g09210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V197	1.34e-35	74.29	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BJL0	1.34e-35	74.29	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103490599 PE=4 ...	[more]
A0A6J1D426	3.50e-35	74.53	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101707...	[more]
A0A0A0KFG3	2.35e-34	72.38	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G191020 PE...	[more]
A0A6J1JHK3	1.57e-33	70.48	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111484439 P...	[more]

BLAST of Cp4.1LG05g09210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46510.1	1.4e-18	44.14	plant U-box 13	[more]
AT3G54850.1	1.5e-12	38.00	plant U-box 14	[more]
AT2G28830.1	2.9e-11	44.44	PLANT U-BOX 12	[more]
AT1G71020.1	3.6e-06	32.98	ARM repeat superfamily protein	[more]
AT1G23030.1	1.2e-04	36.90	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315:SF270	RING-TYPE E3 UBIQUITIN TRANSFERASE	coord: 3..101
None	No IPR available	PANTHER	PTHR23315	U BOX DOMAIN-CONTAINING	coord: 123..153 coord: 3..101
None	No IPR available	PANTHER	PTHR23315:SF270	RING-TYPE E3 UBIQUITIN TRANSFERASE	coord: 123..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g09210.1	Cp4.1LG05g09210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004842	ubiquitin-protein transferase activity