Cp4.1LG05g08710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g08710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	LOB domain-containing protein
Location	Cp4.1LG05: 5685489 .. 5687044 (-)
RNA-Seq Expression	Cp4.1LG05g08710
Synteny	Cp4.1LG05g08710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTCTCTTCTTTTCTCTATTTATATCTCTGTTTTTCCCTCTGCAACTCCAACTCATCTCTTCTTCTTCTTCTTCTTCTCTTTGCTTCCGTTCGTCAATAATGGAAGGAAGTGATTCAATCACCACCGTTTCGTCTACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCCGCTTCACCGCCGCCTCTCGTTCTCAGTCCTTGTGCGGCCTGCAGGATTTTGAGGCGGCGATGTGCCGGAGGATGTGTATTGGCGCCCTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCGAGTAATATCATTAAATGCTTGCAGGTCTTTTTCATCCGCCTTTTATATTCTGTGAATTCGTTGATATGATTGCTGTTTTTTTTGTTTAACTTTGAATTGACGATCGATTAGTTTTGAGGCTCTTATCAATGAACTAGGGCTGAAAAATAATCGTTGATTTGTTATAAACTTTGAAACTAAGGGCCTTGTTACTTCCTTGTTTCTTTTTTCGTTTTGATTTGTGTGTTAATGTGAAACGTAATCGGAAAAGCCATTAAAGGAGGCTCCAACGTTGTTGTAAAAAAGGAGGCAAAAGGTTTTACACATTAAGAAACTACGCAACTGGAAAAGGATTTTTCTGAAATTGACTTTTCTCAAGATCTTGTTGAATTAAAGCCCTAAATTATTTGTTCAATCGACGCATATAGGACTTTTCGATCGAACATTTTGTTTGTTCCTAAACTTTCTTCGTGATGTCTTTTCAGCCAGCCACTTAACCTAATAAGTATCTCAATTTCAATCCCTAACTTGAACATTATATTAGAGTATGTTTATAATATAACTTTTGAAGTATGGAAATTTGAATACAACATTCTGTTTGATTCTGTTTGATCTGAATACAACATCCTGTTGCGAACTGAAATTGTTTGTTGGGGATAATTACAGGAACTGCCTGAATCACAAAGGGCCGATGCAGTGAGCAGCATGGTTTATGAAGCAAATGCGAGGATCAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGATCTTCAAGCGCAGCTAGCGAAGGCTCAGGCTGAGCTTCTCAACATGGAATGCCAACAAGCCAATCTGGTGGCCTTCGTTTGCAGGGAATTAGCTCAGTCTCACCACCAGTGTTTTGATGATTTCAATGCCAGCCCTCACAGCGGCTTCCATAGCATCACCCAAACCAACTTCGATGATTATAGCAATGTAAACCAAATATGGGAACCTCTCTGGACATGAATTATCTGATCTTTTGGTTTCTGCATCTAAGGTGTTTGATAAAAGGTTCCAATGAATTTTCACCAAACTCTTGAGCCAATTTCTGCTTCAAAAGGAGGGAAATTAAAGCTCTCTATCCTCAATTCCTCTGTTAGGCCAAAAAAAAAAAAGAAAAAAAAAGTAGATGCCATGTATACCAATTGCTTAAACTTCTCTCGTTTGAGATAAAATATTCATTTAAATGGAGATATTTTCAGTTTAATGTTC

mRNA sequence

CTCCTCTCTTCTTTTCTCTATTTATATCTCTGTTTTTCCCTCTGCAACTCCAACTCATCTCTTCTTCTTCTTCTTCTTCTCTTTGCTTCCGTTCGTCAATAATGGAAGGAAGTGATTCAATCACCACCGTTTCGTCTACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCCGCTTCACCGCCGCCTCTCGTTCTCAGTCCTTGTGCGGCCTGCAGGATTTTGAGGCGGCGATGTGCCGGAGGATGTGTATTGGCGCCCTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCGAGTAATATCATTAAATGCTTGCAGGAACTGCCTGAATCACAAAGGGCCGATGCAGTGAGCAGCATGGTTTATGAAGCAAATGCGAGGATCAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGATCTTCAAGCGCAGCTAGCGAAGGCTCAGGCTGAGCTTCTCAACATGGAATGCCAACAAGCCAATCTGGTGGCCTTCGTTTGCAGGGAATTAGCTCAGTCTCACCACCAGTGTTTTGATGATTTCAATGCCAGCCCTCACAGCGGCTTCCATAGCATCACCCAAACCAACTTCGATGATTATAGCAATGTAAACCAAATATGGGAACCTCTCTGGACATGAATTATCTGATCTTTTGGTTTCTGCATCTAAGGTGTTTGATAAAAGGTTCCAATGAATTTTCACCAAACTCTTGAGCCAATTTCTGCTTCAAAAGGAGGGAAATTAAAGCTCTCTATCCTCAATTCCTCTGTTAGGCCAAAAAAAAAAAAGAAAAAAAAAGTAGATGCCATGTATACCAATTGCTTAAACTTCTCTCGTTTGAGATAAAATATTCATTTAAATGGAGATATTTTCAGTTTAATGTTC

Coding sequence (CDS)

ATGGAAGGAAGTGATTCAATCACCACCGTTTCGTCTACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCCGCTTCACCGCCGCCTCTCGTTCTCAGTCCTTGTGCGGCCTGCAGGATTTTGAGGCGGCGATGTGCCGGAGGATGTGTATTGGCGCCCTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCGAGTAATATCATTAAATGCTTGCAGGAACTGCCTGAATCACAAAGGGCCGATGCAGTGAGCAGCATGGTTTATGAAGCAAATGCGAGGATCAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGATCTTCAAGCGCAGCTAGCGAAGGCTCAGGCTGAGCTTCTCAACATGGAATGCCAACAAGCCAATCTGGTGGCCTTCGTTTGCAGGGAATTAGCTCAGTCTCACCACCAGTGTTTTGATGATTTCAATGCCAGCCCTCACAGCGGCTTCCATAGCATCACCCAAACCAACTTCGATGATTATAGCAATGTAAACCAAATATGGGAACCTCTCTGGACATGA

Protein sequence

MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNFDDYSNVNQIWEPLWT

Homology

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.5e-50
Identity = 117/195 (60.00%), Postives = 141/195 (72.31%), Query Frame = 0


Query: 4   SDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTEPAK 63
           S S  +V++TP+  S SSS  P+  P +VLSPCAAC+ILRRRCA  CVLAPYFPPT+PAK
Sbjct: 3   SKSDASVATTPIISS-SSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAK 62

Query: 64  FAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVND 123
           F IAHRVFGASNIIK LQELPESQR DAV+SMVYEA ARIRDPVYG AGAI  LQ+QV++
Sbjct: 63  FTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSE 122

Query: 124 LQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNFDDY 183
           LQAQLAKAQ E++NM+ Q++NL+  +   + Q   Q  D+ +      F S      +D 
Sbjct: 123 LQAQLAKAQVEMVNMQFQRSNLLELI-YNMDQQQKQEQDNMS------FESNDLGFLEDK 182

Query: 184 SNVNQI---WEPLWT 196
           SN N     W+PLWT
Sbjct: 183 SNTNSSMLWWDPLWT 189

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 9.4e-48
Identity = 113/211 (53.55%), Postives = 143/211 (67.77%), Query Frame = 0


Query: 4   SDSITTVSSTPLSQSPSSSSSPASP--PPLVLSPCAACRILRRRCAGGCVLAPYFPPTEP 63
           +++ T V+S   + SP    SP  P  PP+VLSPCAAC+ILRRRCA  CVLAPYFPPT+P
Sbjct: 22  TETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDP 81

Query: 64  AKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQV 123
           AKF IAHRVFGASNIIK LQELPESQR DAV+SMVYEA AR+RDPVYG AGAI  LQ+QV
Sbjct: 82  AKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

Query: 124 NDLQAQLAKAQAELLNMECQQANLVAFV---------CRELAQ------SHHQCFDDFNA 183
           ++LQAQLAK Q EL+ M+ Q+++L+  +          +E  Q      S  +  D+F +
Sbjct: 142 SELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFIS 201

Query: 184 SP--HSGFHSITQTNFDDYSNVNQIWEPLWT 196
           SP   S      + N ++ ++    W+PLWT
Sbjct: 202 SPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 78/129 (60.47%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 34  SPCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVS 93
           SPCA+C++LRRRCA  C+ APYFPP +P KFAI H+VFGASN+ K LQELP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 94  SMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELLNMECQQANLVAFVCREL 153
           S+V+EANAR+RDPVYG  GAI  LQ QV+ LQ QLA AQAE+L ++ Q            
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN--------EPT 126

Query: 154 AQSHHQCFD 163
            QSHHQ  +
Sbjct: 127 LQSHHQVLE 127

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.3e-36
Identity = 75/110 (68.18%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 34  SPCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVS 93
           SPCAAC++LRRRCA  CV +PYFP  EP KFA  HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 94  SMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELLNMECQQA 144
           SMVYEANAR+RDPVYG  GAI  LQ+Q++ LQAQLA AQAE++++  +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 7.2e-32
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 25  PASPPPLVL---SPCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQ 84
           P S PP  L   +PCAAC++LRRRCA  C  +PYF P EP KFA  H+VFGASN+ K L 
Sbjct: 32  PMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLM 91

Query: 85  ELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELLNMECQ 144
           E+PESQRADA +S+VYEAN R+RDPVYG  GAI  LQ+QV  LQA+L   ++E+L  + +
Sbjct: 92  EVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR 151

[Close]

BLAST of Cp4.1LG05g08710 vs. NCBI nr
Match: XP_023532307.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388 bits (997), Expect = 4.70e-136
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE
Sbjct: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180
           VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF
Sbjct: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180

Query: 181 DDYSNVNQIWEPLWT 195
           DDYSNVNQIWEPLWT
Sbjct: 181 DDYSNVNQIWEPLWT 195

[Close]

BLAST of Cp4.1LG05g08710 vs. NCBI nr
Match: KAG6605520.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379 bits (972), Expect = 3.05e-132
Identity = 190/195 (97.44%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAAC+ILRRRCAG CVLAPYFPPTE
Sbjct: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACKILRRRCAGRCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180
           V DLQAQLAKAQAEL+NMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF
Sbjct: 121 VIDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180

Query: 181 DDYSNVNQIWEPLWT 195
           DDYSNVNQ+WEPLWT
Sbjct: 181 DDYSNVNQLWEPLWT 195

[Close]

BLAST of Cp4.1LG05g08710 vs. NCBI nr
Match: XP_022947747.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 378 bits (971), Expect = 4.34e-132
Identity = 190/195 (97.44%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAAC+ILRRRCAG CVLAPYFPPTE
Sbjct: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACKILRRRCAGRCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180
           VNDLQAQLAKAQAEL+NMECQQANLVAFVCRELAQSH QCFDDFNASPHSGFHSITQTNF
Sbjct: 121 VNDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHPQCFDDFNASPHSGFHSITQTNF 180

Query: 181 DDYSNVNQIWEPLWT 195
           DDYSNVNQ+WEPLWT
Sbjct: 181 DDYSNVNQLWEPLWT 195

[Close]

BLAST of Cp4.1LG05g08710 vs. NCBI nr
Match: KAG7035458.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372 bits (956), Expect = 8.40e-130
Identity = 188/195 (96.41%), Postives = 191/195 (97.95%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGSDSI TVSSTPLSQSPSSSSSPASPPPLVLSPCAAC+ILRRRCAG CVLAPYFPPTE
Sbjct: 1   MEGSDSIITVSSTPLSQSPSSSSSPASPPPLVLSPCAACKILRRRCAGRCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180
           V DLQAQLAKAQAEL+NMECQQANLVAFVCRELAQSH QCFDDFNASPHSGFHSITQTNF
Sbjct: 121 VIDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHPQCFDDFNASPHSGFHSITQTNF 180

Query: 181 DDYSNVNQIWEPLWT 195
           DDYSNVNQ+WEPLWT
Sbjct: 181 DDYSNVNQLWEPLWT 195

[Close]

BLAST of Cp4.1LG05g08710 vs. NCBI nr
Match: XP_023007401.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 352 bits (904), Expect = 6.40e-122
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGS+SI+TVSSTPLSQSPSSSSSPASPPPLVLSPCAAC+ILRRRCAG CVLAPYFPPTE
Sbjct: 1   MEGSNSISTVSSTPLSQSPSSSSSPASPPPLVLSPCAACKILRRRCAGRCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180
           VNDLQAQLAKAQAEL+NMECQQANLVAFVCRELAQSH++CFDDFNAS HS FHSITQTNF
Sbjct: 121 VNDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHYKCFDDFNASTHSDFHSITQTNF 180

Query: 181 DDYSNVNQIW 190
           DD SNVNQ+W
Sbjct: 181 DDNSNVNQLW 190

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy TrEMBL
Match: A0A6J1G7A9 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451518 PE=3 SV=1)

HSP 1 Score: 378 bits (971), Expect = 2.10e-132
Identity = 190/195 (97.44%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAAC+ILRRRCAG CVLAPYFPPTE
Sbjct: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACKILRRRCAGRCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180
           VNDLQAQLAKAQAEL+NMECQQANLVAFVCRELAQSH QCFDDFNASPHSGFHSITQTNF
Sbjct: 121 VNDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHPQCFDDFNASPHSGFHSITQTNF 180

Query: 181 DDYSNVNQIWEPLWT 195
           DDYSNVNQ+WEPLWT
Sbjct: 181 DDYSNVNQLWEPLWT 195

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy TrEMBL
Match: A0A6J1L0F1 (LOB domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111499908 PE=3 SV=1)

HSP 1 Score: 352 bits (904), Expect = 3.10e-122
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGS+SI+TVSSTPLSQSPSSSSSPASPPPLVLSPCAAC+ILRRRCAG CVLAPYFPPTE
Sbjct: 1   MEGSNSISTVSSTPLSQSPSSSSSPASPPPLVLSPCAACKILRRRCAGRCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNF 180
           VNDLQAQLAKAQAEL+NMECQQANLVAFVCRELAQSH++CFDDFNAS HS FHSITQTNF
Sbjct: 121 VNDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHYKCFDDFNASTHSDFHSITQTNF 180

Query: 181 DDYSNVNQIW 190
           DD SNVNQ+W
Sbjct: 181 DDNSNVNQLW 190

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy TrEMBL
Match: A0A6J1J8I0 (LOB domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111483579 PE=3 SV=1)

HSP 1 Score: 322 bits (824), Expect = 5.55e-110
Identity = 165/196 (84.18%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGSDSI T+SSTP SQSPSSSSSPA PPP+VLSPCAAC+ILRRRCA GCVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIK LQELPESQRADAVSS+VYEA+ARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSG-FHSITQTN 180
           VN+LQAQLAKAQAE++NM+CQQANLVAFVCRELAQSH   FDD NA  HSG FHSI+  +
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180

Query: 181 FDDYSNVNQIWEPLWT 195
           + D +NVN +WEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy TrEMBL
Match: A0A6J1FT49 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448531 PE=3 SV=1)

HSP 1 Score: 322 bits (824), Expect = 5.55e-110
Identity = 165/196 (84.18%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTE 60
           MEGSDSI T+SSTP SQSPSSSSSPA PPP+VLSPCAAC+ILRRRCA GCVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIK LQELPESQRADAVSS+VYEA+ARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSG-FHSITQTN 180
           VN+LQAQLAKAQAE++NM+CQQANLVAFVCRELAQSH   FDD NA  HSG FHSI+  +
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180

Query: 181 FDDYSNVNQIWEPLWT 195
           + D +NVN +WEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of Cp4.1LG05g08710 vs. ExPASy TrEMBL
Match: A0A5D3CSE3 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00590 PE=3 SV=1)

HSP 1 Score: 314 bits (805), Expect = 4.67e-107
Identity = 167/199 (83.92%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 1   MEGSDS--ITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPP 60
           MEGSDS  ITTVSSTPLSQSPSSSSSPA PPP++LSPCAAC+ILRRRCA  CVLAPYFPP
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQ 120
           TEPAKFAIAHRVFGASNIIK LQELPESQRADAVSS+VYEA+ARIRDPVYGSAGAICQLQ
Sbjct: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120

Query: 121 KQVNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGF-HSITQ 180
           KQVN+LQAQLAKAQAE++NM+CQQANLVAFVCRELAQSH Q FD+FN SPH+G   SI  
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSH-QSFDEFNGSPHNGLLQSINP 180

Query: 181 TN-FDDYSNVNQIWEPLWT 195
            + FDD +NVN +WEPLWT
Sbjct: 181 PSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of Cp4.1LG05g08710 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-51
Identity = 117/195 (60.00%), Postives = 141/195 (72.31%), Query Frame = 0


Query: 4   SDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTEPAK 63
           S S  +V++TP+  S SSS  P+  P +VLSPCAAC+ILRRRCA  CVLAPYFPPT+PAK
Sbjct: 3   SKSDASVATTPIISS-SSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAK 62

Query: 64  FAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVND 123
           F IAHRVFGASNIIK LQELPESQR DAV+SMVYEA ARIRDPVYG AGAI  LQ+QV++
Sbjct: 63  FTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSE 122

Query: 124 LQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNFDDY 183
           LQAQLAKAQ E++NM+ Q++NL+  +   + Q   Q  D+ +      F S      +D 
Sbjct: 123 LQAQLAKAQVEMVNMQFQRSNLLELI-YNMDQQQKQEQDNMS------FESNDLGFLEDK 182

Query: 184 SNVNQI---WEPLWT 196
           SN N     W+PLWT
Sbjct: 183 SNTNSSMLWWDPLWT 189

[Close]

BLAST of Cp4.1LG05g08710 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 191.4 bits (485), Expect = 6.7e-49
Identity = 113/211 (53.55%), Postives = 143/211 (67.77%), Query Frame = 0


Query: 4   SDSITTVSSTPLSQSPSSSSSPASP--PPLVLSPCAACRILRRRCAGGCVLAPYFPPTEP 63
           +++ T V+S   + SP    SP  P  PP+VLSPCAAC+ILRRRCA  CVLAPYFPPT+P
Sbjct: 22  TETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDP 81

Query: 64  AKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQV 123
           AKF IAHRVFGASNIIK LQELPESQR DAV+SMVYEA AR+RDPVYG AGAI  LQ+QV
Sbjct: 82  AKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

Query: 124 NDLQAQLAKAQAELLNMECQQANLVAFV---------CRELAQ------SHHQCFDDFNA 183
           ++LQAQLAK Q EL+ M+ Q+++L+  +          +E  Q      S  +  D+F +
Sbjct: 142 SELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFIS 201

Query: 184 SP--HSGFHSITQTNFDDYSNVNQIWEPLWT 196
           SP   S      + N ++ ++    W+PLWT
Sbjct: 202 SPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of Cp4.1LG05g08710 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 154.5 bits (389), Expect = 9.0e-38
Identity = 78/129 (60.47%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 34  SPCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVS 93
           SPCA+C++LRRRCA  C+ APYFPP +P KFAI H+VFGASN+ K LQELP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 94  SMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELLNMECQQANLVAFVCREL 153
           S+V+EANAR+RDPVYG  GAI  LQ QV+ LQ QLA AQAE+L ++ Q            
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN--------EPT 126

Query: 154 AQSHHQCFD 163
            QSHHQ  +
Sbjct: 127 LQSHHQVLE 127

[Close]

BLAST of Cp4.1LG05g08710 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 152.1 bits (383), Expect = 4.5e-37
Identity = 75/110 (68.18%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 34  SPCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVS 93
           SPCAAC++LRRRCA  CV +PYFP  EP KFA  HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 94  SMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELLNMECQQA 144
           SMVYEANAR+RDPVYG  GAI  LQ+Q++ LQAQLA AQAE++++  +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Cp4.1LG05g08710 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-33
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 25  PASPPPLVL---SPCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQ 84
           P S PP  L   +PCAAC++LRRRCA  C  +PYF P EP KFA  H+VFGASN+ K L 
Sbjct: 32  PMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLM 91

Query: 85  ELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELLNMECQ 144
           E+PESQRADA +S+VYEAN R+RDPVYG  GAI  LQ+QV  LQA+L   ++E+L  + +
Sbjct: 92  EVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR 151

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g08710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQR0	3.5e-50	60.00	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	9.4e-48	53.55	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q8LBW3	1.3e-36	60.47	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	6.3e-36	68.18	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8L5T5	7.2e-32	58.20	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of Cp4.1LG05g08710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532307.1	4.70e-136	100.00	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6605520.1	3.05e-132	97.44	LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022947747.1	4.34e-132	97.44	LOB domain-containing protein 1-like [Cucurbita moschata]	[more]
KAG7035458.1	8.40e-130	96.41	LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_023007401.1	6.40e-122	94.21	LOB domain-containing protein 1-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG05g08710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7A9	2.10e-132	97.44	LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114515...	[more]
A0A6J1L0F1	3.10e-122	94.21	LOB domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111499908...	[more]
A0A6J1J8I0	5.55e-110	84.18	LOB domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111483579 PE=3...	[more]
A0A6J1FT49	5.55e-110	84.18	LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114485...	[more]
A0A5D3CSE3	4.67e-107	83.92	LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cp4.1LG05g08710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07900.1	2.5e-51	60.00	LOB domain-containing protein 1	[more]
AT2G28500.1	6.7e-49	53.55	LOB domain-containing protein 11	[more]
AT2G30130.1	9.0e-38	60.47	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	4.5e-37	68.18	LOB domain-containing protein 4	[more]
AT2G40470.1	5.1e-33	58.20	LOB domain-containing protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 114..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR31301:SF141	LOB DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 11..192
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 11..192
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 35..132 e-value: 3.4E-40 score: 136.6
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 34..135 score: 25.595442

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g08710.1	Cp4.1LG05g08710.1	mRNA