Cp4.1LG05g08690 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g08690
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA repair protein RAD51 homolog 2-like
Location	Cp4.1LG05: 5743155 .. 5749360 (+)
RNA-Seq Expression	Cp4.1LG05g08690
Synteny	Cp4.1LG05g08690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGTTCTTAATTTAGACTTGGTTCATAATGTCATGTATTGAACGGGAGTTTCTCTTTTGAAATATTTTTCCAGGCTTGTTCTCTGTTCTTGGTTGGATTAGTTTTCAGCCCTGTAGCCGGTTTTAGCCTATAGAAAATTAAATTGCAGTATTGGTTTATTTAATTTGTTTCAGGAAGCTTTATACTTAACTGAATTTGAGTTGATGGAGTTATTGGACGCGGGATTGTTGGAAGTTGCATCAGCAGTTGCGCACATTATTGAATTGCTTCTCTCCTTATCAGACGGTAAGAAATCAGTTGCTTCTATTTATTGATTGTCAAGCGCATTATACTTGTCTAAGAGGATTTTTTTTTGTTTATGCTTTCCACATCCCTGACTTCTGTTGCTTTTAGAGGTGATGATCTAGTTGCATCAATTGGTGCTTTCTCTAATGGATCAAAGACTTCAAAACGAGCATTTAACTGGCCATCTTTCTACATGTTTAAAAGGTTTAGACGAGGCCTTATTTGGTGGAATCCCATTTGGTGTCTTGACAGAGCTTGTTGGTCCAGCTTGAATTGGCAAAACGCAAGTGTGATTCTTTCCTAGTTTTCGGGTTTGTTAATTATCTTTATGTTATATCAGAAAATTTTAGTTGATTGGATTGGAGTATCAATTGAATATATGGTTGCATAAGTTGAAGCATGTTCAACTACTTTCTGCTGACATGCGACTTTTTCTGGTTGTTGAATTTCAGTTTTGCTTGAAACTCTCTTTATTGGCTGCTCTGCCACCGAGCTATGGAATATATATTGATGTAGAATCTAAGTTTAGTTCCAGAAGGGCTTTTAATTATACCATGCTACTGGTTGTTTACTCATTATATTTGTGTAATGGGCGCATGACTTTTTTGGTTTTTCAACTCCGTCTCTCTCGGCAGGATGATTGAAATTGACATGAGAAGCTTTCCTGTTGTATTGCAAATGAAGGACATGGCACAAGAGGTATCAAACTGATATATATTCTTTTCCTTTCAAATTTTAATTTAAAATGCATAAGATGGAACATTCTTAATTTTCACTCCAGATGGCTGGTAGGATTCTTGTTTTGCCACCTGCATCACTTTCTGAATTCACTGAGAGGTTTGGATCAAAGTCAAATAAATGTCATTTGGCCTAGACATGTCAATGATTTGAGAAAATGAAATGCTAAGGATAACACATTTTATCTACAAAATTTAGCAGAATATTTAGACGTATGTAATGCAGTTCGAGGTATGTACATATTAGCTCAATTGCAATGATTTTCCTGCAATGGCATTGAATATTCAAATAGAACACAATTCAAGTGCTTGTTAGGACTGGGATTTCGTGGACTATCCATATATAGCCTATAGATAATCATCAATCATTAGTTAGAATAATGAAGATTGTAAACGGAGAAGAAAAATGAATGCTGCACTTACTCATATATTTTTAGAGTTTATTCCCAACCAATGTCTGATGTCAAGTACCAGAGCGTTTATCTGATCACCTTCTGTATAGACAGGCATAAGTTTGCAACTCAAATGTGACTGGAGATTAAATGAAATGCAGTTATATGCATTCGTTTAAGTTATAGCAATGGATCTGAATAAGTCTGTATCATATAGTGCTTTTGCGAGAGATTGACTGTGCACACTTGACTTGCATCTCTCAAACTCGATTCAGTTATCTAATAAAATTGCTGTGAATTCTGCATGTGGAGGCTCTTCTCTTTTCCCATTAACCTACAAACCCATGAAAGATTTTCAATATCTGTATTGTTATAGCACTATGGTTCATTGACTCATTCTGTGACAATTTGTTTGGTGCTTGAAGCAAAATTTGGTTGGAACACTTTTCACTGATTATTGCCCTTTGGCTGATATAATGCTGAAATGGCTCTGATGTCAACGGATCTTTATGTTTAATGATATCTTCTCGGCTTGTTTAAGTTTTAAGCGAGATAGGGGCAGTCGAAACTAGAGAAAGTGCTTCTAACAATGTTTCATAACTCATCATTTCCATCATCCCTCATAGGTCAGAGGTTCATCAAGATTGCAAAATCTCCAATGTCTCCACCCCTAACTTTCCCTTTTATCATAACCTCATCCAGAATTTCATTGTGGAGTGACAATTGAAAAGAACCAAGTGGAGCTGAGATCAATGAGAGTCACCGTCAAGGTTTCTGTTACTCCCTAGGAAGAACGGTAGCAACATAAACAGCGCCTTCTCTTCAATTAAAAATCTATATGGACATAAGTTAGAAGCTCAAGTACTCTCAAAACACTTTACTCTTTGTTTTCTCCAAAACATTTTGAACTGATAGTTGCAAATTCAATATCATTGCCTCCATGATGTTAATAACTTATCTCCCAGCTTCATTGTCTGAAATTTACCAAGGATGCTACGAGAAGTTGATGTTTTTAGTGTATTATATTCTACTATTAAGCCTAAGATATACTCCGTACTAGGTTTCTCTTTAGCTTTGTTGTTTTTTGGTTGTTTGGCTTTATGACATTAATGCAGGACACGGTGATATTAACAGCTATTATTTGGAAAATGAGCAACGTGAATGGGACTGCTAAAAATCTCAGGCTTGTCATGCATATACGAGACTTGTGCTGAATTGGTGGTTTCCTGTTGTTAATGGTCGGTTAATGAGGAAATAGTTCATTAATTTCGAATTATGATTTGGATTCTCATTTCATGTTCAATTTTAACATTTGAAATTACAGTGAATATTTTTCCTATTTCATGAGAATCCATGATTATTCTACCATTTTCTTTTTTATCAGGTTATATTAAGCGGATAGCTTAGAACTAACCAACCGAACATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGTGGAATTGTTTGCCTAATTTCTTAGTGATAAAAATGTTTGGAAAGTACGGGTAGGACGTTGTGTTGATTCATTATAATGCTGGAACTAGGTTGCCACCAATTTGATCGTGCTCCAGCCAGCTCCTAATTGATACAATGATGTCTTATGACATTTACCTATATCGAGTGAAGTTCTACAGGTTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATATCTGTGAGTGTCTAAGTCCACTTGCACGCAACTCGACTAATCTACGAGACAACTGCCCAACCCTACTACATTTGGTTGTAAAAAAAATGGTATCTACCATAAATTGAACTAGTTCTCTCTAAGTTTTCTGGTCCTTGCAACTCTTGATGGTTATAGCCACAAACATTTTGAGATTGAACCTTGCATGCTTAACAAAAATTCTGTTGATGCATGGACGATTGTGGTAGACTATAGTTTCAAAGATTGCAAAACACTAGATTTCGGAACTCTTGGAACACAATGGCTATTAAAACAAAGGAATTGTGGTATGTTCTAAATATGGAGAATAAAAATTTCTATGGACTAACATATTTTATGGTCACGTGAATGTTTCATTATTCCAAACTTTCAAGTACAGCAAGCTGTGGAAGGAAAAAAGAAAAAGAGTTAACCTGAAGGTTTGTAATCAATTTTATATCCTGTCCTAAGACTTGGTCTACTTCAGATTTGGAGTTGATTTATGTTTCTACATTTCAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGGTTCTCTAGAACCTTTTTGTGGGCATTTTTGCAAGTGGATGGTTGAAAGAAAGCAATCTCGATGCTGTCAAATTAAGGAAGGTGGTTTTGCTAAAACACTTCTCATTTTAAAATTGCAGATATGTTTCCCAGTAACTTATGCTCTTTCTAGTAGATTCTCCATTCCCATTAGTTTATTTTAGTGTAGATGATTTTACTAATCCTACCCACTTTGTATTTTATATTTTAAAACCTGATCGAGATCCACCAATTATCTTGAACTTTGAGAAACAAAGAATAAATAATGCAGCAACTTATCGAATCCTTCGACAGAGAAAAGGAATATTGGCCCTGCAATTGTCACAAACGAAGAACAAACTAAGGAACATAAAAGAAACAAATCAAAGAAAAGAAAAGAAAAGCTGTAGAAACATAGAAACATGAAGCCAGCCAGTTAGAAACAGATGTTTTCACCTTGAAATTGTCCTTTACTCTACAAATAAAATCCTGATTTTACCTTCTGTAATTCCTGTCTTTGTTGGTTGTCAAATTTACCACGTGTTAGTTATATTATTGGCTGTCTCTTGACCATACTTTGCTTTGGACATAATATCAAAAAGAAAACAAAATGTGCTTTATATGATGATAAGATTCATGTTGGGTGGAGTGACAATGCCATCAAAACACAAACCTTTTAGTTCAACCCAAAACCTTCAAATGGAAGAATGAAACACAAATATTAACCAAAAGCCCTACCTGCTGTTCCCTGTATCATTGCTTTTTAAAAACTATGATAAGATTCATCTCTCGGAATAAAATCATATTTAGATTGAATTCTGGAAGCCCTTCAAAAGGAAGAGTGAGGTAAAATTCTCAGCCAATTACTTCCCTGTCCCACATACCTACCTACTAAAGATGTAGAACAGTTTGTATCTTTTTCTTTTAGTTCTTCATGATTTTGTTTTCTTTTCTTTGGGTAATAAACCAATAGAAGGTTAAAGAAAGGGGGGTGGGGGGAAAGCAATGCATAGAAGAAAAGGACTGGAAAGTAGAAACTGGGGTGATTTTGTTTTAGCCCAAGTAGACATAAAAGTACTTGAAATCTTCCTCCACTGCTTTATTTTAACAAGAAAAAGGTTGGTTTGTAGCTGTGGGGAGTCCAAACGTTTGACATTTTCTGTTCCTCAAACTTTTTTAAGGATTCATTCTCTTTTCTGCCTTTTTTTTCTTCCCATTTGGACTCATTATCCTTTCTCTTTCTCTCTCTTGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGGTATTTTTTATGCTTTAAAAAGAATTGCAAATTGGTATTCAAATTTGGTACTTCTTTTTTTGTTTTTCCAATGAATGTCTGAACATGTTTAGCTTTTAAGTACAGAAATGATCCGATGCTGTTTGCAATAAATTAATGAGGCATTTAGTCACTAATACATTGGACTTACCTTTTCTTTATTATTAACTTTCAGACATCTTAATCTCCTCGAAATGTTTTGTCGCTTTATATTATATTGTTATAAATATACGATGCTCCTTTTATATTTTATTCTATTTTATTCTATTTTATTTGTGGTATCATGTTCAGTGCACTCACGCATTTTATTTTGATAGCTATAATGTTCGTTCTTTGAGAAAATATCAAGTTTATCTTTCAACTTTTTCTAATTTTAAATTATAAAGATTGGCTTTTAAATTTGAACCTAGTATTTTTTTTTTTTTTTAATTCACTATCTAATGTATTACACGTACAAGATTTTGTATGCTTTAAAAATGTTTAAATTATTTGCTTGATATTTGTCGCTAACTCTTGACTTTATCCATAGGAATTGAATTGATGGATTTGTTATGATATACAGTTGTGATTCATGTGAAGGTTATCTCTACAATATGCTTTTCTAGAAAATTCAAATAAAAAAATCCTGAAAAGATTTGAGCCATAAGATTAGTAATTTTGAGTTATTTTATTGGATAATCTCTTGATTTTGGTAATGGCCAGTTGTTGTTCTTAATTTATTTAATATTCCTCTTGTTTTTTTTTTTCGAGGTTTCTTTATTTTAATTGCTTCTCTCGTGGTTGAGAGGCATCATTATTTGGATTTTTTTTTAATTATTAGTACAAAGGTTTCTCAATAATTTGTGACTAGGATGGTTTTATTATCTATTTCTTTATTACTTAGAATGATTTTTTTGAATCGGGGAAGTGTACCGGTACTAATTTTCTACTGAAATAGAATCGTTACTATATGCATGACATGACATTTCTATTTGGAAACGTTCATTTAGAATAATTTTATGAAACGAATGCAACTACTCTAATGTAGGTTTTATGGCCTTTGATGTGATGTTGTCGTCACTCGTACTGGGATATCCTTGCATTTATCTAAAATATAAGAGTAGCACAGAACAAATATTCCGGAAGTAACTTCACTATTGGATCCATGGAATGCAAAACATGAATGAGACTTATCTTTAAAACAATATTCTCTTAGGTGGCCGCAAGCTAGATGTGTAG

mRNA sequence

ATGGCAATGGAAGCTTTATACTTAACTGAATTTGAGTTGATGGAGTTATTGGACGCGGGATTGTTGGAAGTTGCATCAGCAGTTGCGCACATTATTGAATTGCTTCTCTCCTTATCAGACGGTGATGATCTAGTTGCATCAATTGGTGCTTTCTCTAATGGATCAAAGACTTCAAAACGAGCATTTAACTGGCCATCTTTCTACATGTTTAAAAGGTTTAGACGAGGCCTTATTTGGTGGAATCCCATTTGGTGTCTTGACAGAGCTTGTTGGTCCAGCTTGAATTGGCAAAACGCAATTTTCGGGATGATTGAAATTGACATGAGAAGCTTTCCTGTTGTATTGCAAATGAAGGACATGGCACAAGAGATGGCTGGTAGGATTCTTGTTTTGCCACCTGCATCACTTTCTGAATTCACTGAGAGAATATTTAGACAATTTCATTGTGGAGTGACAATTGAAAAGAACCAAGTGGAGCTGAGATCAATGAGAGTCACCGTCAAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGTACAAAGGTGGCCGCAAGCTAGATGTGTAG

Coding sequence (CDS)

ATGGCAATGGAAGCTTTATACTTAACTGAATTTGAGTTGATGGAGTTATTGGACGCGGGATTGTTGGAAGTTGCATCAGCAGTTGCGCACATTATTGAATTGCTTCTCTCCTTATCAGACGGTGATGATCTAGTTGCATCAATTGGTGCTTTCTCTAATGGATCAAAGACTTCAAAACGAGCATTTAACTGGCCATCTTTCTACATGTTTAAAAGGTTTAGACGAGGCCTTATTTGGTGGAATCCCATTTGGTGTCTTGACAGAGCTTGTTGGTCCAGCTTGAATTGGCAAAACGCAATTTTCGGGATGATTGAAATTGACATGAGAAGCTTTCCTGTTGTATTGCAAATGAAGGACATGGCACAAGAGATGGCTGGTAGGATTCTTGTTTTGCCACCTGCATCACTTTCTGAATTCACTGAGAGAATATTTAGACAATTTCATTGTGGAGTGACAATTGAAAAGAACCAAGTGGAGCTGAGATCAATGAGAGTCACCGTCAAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGTACAAAGGTGGCCGCAAGCTAGATGTGTAG

Protein sequence

MAMEALYLTEFELMELLDAGLLEVASAVAHIIELLLSLSDGDDLVASIGAFSNGSKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLDRACWSSLNWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIEKNQVELRSMRVTVKGFLSRKMACWKPEQIVFYLTCDPLTPPATEYKGGRKLDV

Homology

[Close]

BLAST of Cp4.1LG05g08690 vs. ExPASy Swiss-Prot
Match: Q9SK02 (DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=RAD51B PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 59/186 (31.72%), Postives = 83/186 (44.62%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIE-----------LLLSLSDGDDLVASIGA 61
           A +AL +TEFELMELLD G+ E+ SA++ I E           LL    + + L   +  
Sbjct: 27  AKDALSMTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPT 86

Query: 62  FSNG---------------SKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD-RACWSSL 121
              G                           F M  +      +      LD R  +  +
Sbjct: 87  HLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM--KLALSASFPVAYGGLDGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 161
             + +   +IE+ + SFP V  +K MAQEMAGRILVL P SL+ FTE I    +   +I 
Sbjct: 147 ESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKN---SIL 206

[Close]

BLAST of Cp4.1LG05g08690 vs. NCBI nr
Match: XP_022947033.1 (DNA repair protein RAD51 homolog 2-like [Cucurbita moschata])

HSP 1 Score: 100 bits (249), Expect = 1.30e-23
Identity = 58/98 (59.18%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 2  AMEALYLTEFELMELLDAGLLEVASAVAHIIELLLSLSDGDDLVASIGAFSNGSKTSKRA 61
          A EAL LTEFELMELLD GLLEVA+AVAHIIE           +AS              
Sbjct: 27 AKEALSLTEFELMELLDVGLLEVAAAVAHIIE-----------IAS-------------- 86

Query: 62 FNWPSFYMFKRFRRGLIWWNPIWCLDRACWSSLNWQNA 99
             P +    RFRRGLIWWNPIWCLDRACWSSLNW NA
Sbjct: 87 ---PPYQT--RFRRGLIWWNPIWCLDRACWSSLNWPNA 94

[Close]

BLAST of Cp4.1LG05g08690 vs. NCBI nr
Match: KAG6605511.1 (DNA repair protein RAD51-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 5.99e-21
Identity = 70/129 (54.26%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIELLLSLSDGDDLVASIGAFSNGSKTSKRA 61
           A EAL LTEFELMELLD GLLEVASAVAHIIE+               A      TSKRA
Sbjct: 71  AKEALSLTEFELMELLDVGLLEVASAVAHIIEI---------------ASPPYQTTSKRA 130

Query: 62  FNWPSFYMFKRFR----RGLIWWNP--IWCLD-RACWSSLNWQNAIFGMIEIDMRSFPVV 121
           FNWPSFYMFK FR      L+   P     LD R  +  +  + +   MIEIDMRSFP V
Sbjct: 131 FNWPSFYMFKSFRFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDV 184

Query: 122 LQMKDMAQE 123
           L+MKD+AQE
Sbjct: 191 LEMKDIAQE 184

[Close]

BLAST of Cp4.1LG05g08690 vs. NCBI nr
Match: XP_022986666.1 (DNA repair protein RAD51 homolog 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 1.63e-15
Identity = 75/195 (38.46%), Postives = 94/195 (48.21%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIEL-------LLSLSD----GDDLVASIGA 61
           A EAL LTEFELMELLD GL EVASAVAHI E+       +LSL +     + L   +  
Sbjct: 27  AKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPYQTVLSLMEQRLQNEHLAGHLST 86

Query: 62  FSNGSKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD----------------RACWSSL 121
              G    +  F    F +              +CL                 R  +  +
Sbjct: 87  CLKG--LDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLAGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 169
            ++ +   MIEI MRSFP V Q KDMA+EMAGRILVL PASLSEFTE + +     +  E
Sbjct: 147 EYKFSSRRMIEIGMRSFPDVFQKKDMAKEMAGRILVLRPASLSEFTESLHKIKVSLLEQE 206

[Close]

BLAST of Cp4.1LG05g08690 vs. NCBI nr
Match: XP_022986663.1 (DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita maxima] >XP_022986664.1 DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita maxima] >XP_022986665.1 DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 2.50e-15
Identity = 75/195 (38.46%), Postives = 94/195 (48.21%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIEL-------LLSLSD----GDDLVASIGA 61
           A EAL LTEFELMELLD GL EVASAVAHI E+       +LSL +     + L   +  
Sbjct: 27  AKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPYQTVLSLMEQRLQNEHLAGHLST 86

Query: 62  FSNGSKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD----------------RACWSSL 121
              G    +  F    F +              +CL                 R  +  +
Sbjct: 87  CLKG--LDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLAGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 169
            ++ +   MIEI MRSFP V Q KDMA+EMAGRILVL PASLSEFTE + +     +  E
Sbjct: 147 EYKFSSRRMIEIGMRSFPDVFQKKDMAKEMAGRILVLRPASLSEFTESLHKIKVSLLEQE 206

[Close]

BLAST of Cp4.1LG05g08690 vs. NCBI nr
Match: XP_022943313.1 (DNA repair protein RAD51 homolog 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 8.18e-15
Identity = 75/195 (38.46%), Postives = 93/195 (47.69%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIEL-------LLSLSD----GDDLVASIGA 61
           A EAL LTEFELMELLD GL EVASAVAHI E+       +LSL +     + L   +  
Sbjct: 27  AKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPYQTVLSLMEQRLQNEHLAGHLST 86

Query: 62  FSNGSKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD----------------RACWSSL 121
              G    +  F    F +              +CL                 R  +  +
Sbjct: 87  CLKG--LDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLAGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 169
             + +   MIEI MRSFP V Q KDMA+EMAGRILVL PASLSEFTE + +     +  E
Sbjct: 147 ESKFSSRRMIEIGMRSFPDVFQKKDMAKEMAGRILVLRPASLSEFTESLHKIKVSLLEQE 206

[Close]

BLAST of Cp4.1LG05g08690 vs. ExPASy TrEMBL
Match: A0A6J1G5H9 (DNA repair protein RAD51 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111451031 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 6.32e-24
Identity = 58/98 (59.18%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 2  AMEALYLTEFELMELLDAGLLEVASAVAHIIELLLSLSDGDDLVASIGAFSNGSKTSKRA 61
          A EAL LTEFELMELLD GLLEVA+AVAHIIE           +AS              
Sbjct: 27 AKEALSLTEFELMELLDVGLLEVAAAVAHIIE-----------IAS-------------- 86

Query: 62 FNWPSFYMFKRFRRGLIWWNPIWCLDRACWSSLNWQNA 99
             P +    RFRRGLIWWNPIWCLDRACWSSLNW NA
Sbjct: 87 ---PPYQT--RFRRGLIWWNPIWCLDRACWSSLNWPNA 94

[Close]

BLAST of Cp4.1LG05g08690 vs. ExPASy TrEMBL
Match: A0A6J1JBU9 (DNA repair protein RAD51 homolog 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484351 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.88e-16
Identity = 75/195 (38.46%), Postives = 94/195 (48.21%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIEL-------LLSLSD----GDDLVASIGA 61
           A EAL LTEFELMELLD GL EVASAVAHI E+       +LSL +     + L   +  
Sbjct: 27  AKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPYQTVLSLMEQRLQNEHLAGHLST 86

Query: 62  FSNGSKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD----------------RACWSSL 121
              G    +  F    F +              +CL                 R  +  +
Sbjct: 87  CLKG--LDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLAGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 169
            ++ +   MIEI MRSFP V Q KDMA+EMAGRILVL PASLSEFTE + +     +  E
Sbjct: 147 EYKFSSRRMIEIGMRSFPDVFQKKDMAKEMAGRILVLRPASLSEFTESLHKIKVSLLEQE 206

[Close]

BLAST of Cp4.1LG05g08690 vs. ExPASy TrEMBL
Match: A0A6J1JH72 (DNA repair protein RAD51 homolog 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484351 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.21e-15
Identity = 75/195 (38.46%), Postives = 94/195 (48.21%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIEL-------LLSLSD----GDDLVASIGA 61
           A EAL LTEFELMELLD GL EVASAVAHI E+       +LSL +     + L   +  
Sbjct: 27  AKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPYQTVLSLMEQRLQNEHLAGHLST 86

Query: 62  FSNGSKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD----------------RACWSSL 121
              G    +  F    F +              +CL                 R  +  +
Sbjct: 87  CLKG--LDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLAGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 169
            ++ +   MIEI MRSFP V Q KDMA+EMAGRILVL PASLSEFTE + +     +  E
Sbjct: 147 EYKFSSRRMIEIGMRSFPDVFQKKDMAKEMAGRILVLRPASLSEFTESLHKIKVSLLEQE 206

[Close]

BLAST of Cp4.1LG05g08690 vs. ExPASy TrEMBL
Match: A0A6J1FWQ4 (DNA repair protein RAD51 homolog 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448118 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.96e-15
Identity = 75/195 (38.46%), Postives = 93/195 (47.69%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIEL-------LLSLSD----GDDLVASIGA 61
           A EAL LTEFELMELLD GL EVASAVAHI E+       +LSL +     + L   +  
Sbjct: 27  AKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPYQTVLSLMEQRLQNEHLAGHLST 86

Query: 62  FSNGSKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD----------------RACWSSL 121
              G    +  F    F +              +CL                 R  +  +
Sbjct: 87  CLKG--LDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLAGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 169
             + +   MIEI MRSFP V Q KDMA+EMAGRILVL PASLSEFTE + +     +  E
Sbjct: 147 ESKFSSRRMIEIGMRSFPDVFQKKDMAKEMAGRILVLRPASLSEFTESLHKIKVSLLEQE 206

[Close]

BLAST of Cp4.1LG05g08690 vs. ExPASy TrEMBL
Match: A0A6J1FTX6 (DNA repair protein RAD51 homolog 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448118 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.92e-15
Identity = 75/195 (38.46%), Postives = 93/195 (47.69%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIEL-------LLSLSD----GDDLVASIGA 61
           A EAL LTEFELMELLD GL EVASAVAHI E+       +LSL +     + L   +  
Sbjct: 27  AKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPYQTVLSLMEQRLQNEHLAGHLST 86

Query: 62  FSNGSKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD----------------RACWSSL 121
              G    +  F    F +              +CL                 R  +  +
Sbjct: 87  CLKG--LDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLAGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 169
             + +   MIEI MRSFP V Q KDMA+EMAGRILVL PASLSEFTE + +     +  E
Sbjct: 147 ESKFSSRRMIEIGMRSFPDVFQKKDMAKEMAGRILVLRPASLSEFTESLHKIKVSLLEQE 206

[Close]

BLAST of Cp4.1LG05g08690 vs. TAIR 10
Match: AT2G28560.1 (DNA repair (Rad51) family protein )

HSP 1 Score: 55.1 bits (131), Expect = 7.9e-08
Identity = 59/186 (31.72%), Postives = 83/186 (44.62%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIE-----------LLLSLSDGDDLVASIGA 61
           A +AL +TEFELMELLD G+ E+ SA++ I E           LL    + + L   +  
Sbjct: 27  AKDALSMTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPT 86

Query: 62  FSNG---------------SKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD-RACWSSL 121
              G                           F M  +      +      LD R  +  +
Sbjct: 87  HLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM--KLALSASFPVAYGGLDGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 161
             + +   +IE+ + SFP V  +K MAQEMAGRILVL P SL+ FTE I    +   +I 
Sbjct: 147 ESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKN---SIL 206

[Close]

BLAST of Cp4.1LG05g08690 vs. TAIR 10
Match: AT2G28560.2 (DNA repair (Rad51) family protein )

HSP 1 Score: 55.1 bits (131), Expect = 7.9e-08
Identity = 59/186 (31.72%), Postives = 83/186 (44.62%), Query Frame = 0


Query: 2   AMEALYLTEFELMELLDAGLLEVASAVAHIIE-----------LLLSLSDGDDLVASIGA 61
           A +AL +TEFELMELLD G+ E+ SA++ I E           LL    + + L   +  
Sbjct: 27  AKDALSMTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPT 86

Query: 62  FSNG---------------SKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD-RACWSSL 121
              G                           F M  +      +      LD R  +  +
Sbjct: 87  HLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM--KLALSASFPVAYGGLDGRVIYIDV 146

Query: 122 NWQNAIFGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIE 161
             + +   +IE+ + SFP V  +K MAQEMAGRILVL P SL+ FTE I    +   +I 
Sbjct: 147 ESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKN---SIL 206

[Close]

BLAST of Cp4.1LG05g08690 vs. TAIR 10
Match: AT2G28560.3 (DNA repair (Rad51) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-07
Identity = 56/180 (31.11%), Postives = 79/180 (43.89%), Query Frame = 0


Query: 8   LTEFELMELLDAGLLEVASAVAHIIE-----------LLLSLSDGDDLVASIGAFSNG-- 67
           +TEFELMELLD G+ E+ SA++ I E           LL    + + L   +     G  
Sbjct: 1   MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60

Query: 68  -------------SKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD-RACWSSLNWQNAI 127
                                    F M  +      +      LD R  +  +  + + 
Sbjct: 61  DTLCGGIPFGVLTELVGPPGIGKSQFCM--KLALSASFPVAYGGLDGRVIYIDVESKFSS 120

Query: 128 FGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIEKNQVEL 161
             +IE+ + SFP V  +K MAQEMAGRILVL P SL+ FTE I    +   +I +NQV+L
Sbjct: 121 RRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKN---SILQNQVKL 175

[Close]

BLAST of Cp4.1LG05g08690 vs. TAIR 10
Match: AT2G28560.4 (DNA repair (Rad51) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-07
Identity = 56/180 (31.11%), Postives = 79/180 (43.89%), Query Frame = 0


Query: 8   LTEFELMELLDAGLLEVASAVAHIIE-----------LLLSLSDGDDLVASIGAFSNG-- 67
           +TEFELMELLD G+ E+ SA++ I E           LL    + + L   +     G  
Sbjct: 1   MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60

Query: 68  -------------SKTSKRAFNWPSFYMFKRFRRGLIWWNPIWCLD-RACWSSLNWQNAI 127
                                    F M  +      +      LD R  +  +  + + 
Sbjct: 61  DTLCGGIPFGVLTELVGPPGIGKSQFCM--KLALSASFPVAYGGLDGRVIYIDVESKFSS 120

Query: 128 FGMIEIDMRSFPVVLQMKDMAQEMAGRILVLPPASLSEFTERIFRQFHCGVTIEKNQVEL 161
             +IE+ + SFP V  +K MAQEMAGRILVL P SL+ FTE I    +   +I +NQV+L
Sbjct: 121 RRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKN---SILQNQVKL 175

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g08690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SK02	1.1e-06	31.72	DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=RAD51B PE=...	[more]

BLAST of Cp4.1LG05g08690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947033.1	1.30e-23	59.18	DNA repair protein RAD51 homolog 2-like [Cucurbita moschata]	[more]
KAG6605511.1	5.99e-21	54.26	DNA repair protein RAD51-like 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986666.1	1.63e-15	38.46	DNA repair protein RAD51 homolog 2 isoform X2 [Cucurbita maxima]	[more]
XP_022986663.1	2.50e-15	38.46	DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita maxima] >XP_022986664.1...	[more]
XP_022943313.1	8.18e-15	38.46	DNA repair protein RAD51 homolog 2 isoform X2 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG05g08690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5H9	6.32e-24	59.18	DNA repair protein RAD51 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JBU9	7.88e-16	38.46	DNA repair protein RAD51 homolog 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JH72	1.21e-15	38.46	DNA repair protein RAD51 homolog 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FWQ4	3.96e-15	38.46	DNA repair protein RAD51 homolog 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FTX6	5.92e-15	38.46	DNA repair protein RAD51 homolog 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Cp4.1LG05g08690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28560.1	7.9e-08	31.72	DNA repair (Rad51) family protein	[more]
AT2G28560.2	7.9e-08	31.72	DNA repair (Rad51) family protein	[more]
AT2G28560.3	8.8e-07	31.11	DNA repair (Rad51) family protein	[more]
AT2G28560.4	8.8e-07	31.11	DNA repair (Rad51) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030548	DNA repair protein RAD51 homologue 2	PANTHER	PTHR46456	DNA REPAIR PROTEIN RAD51 HOMOLOG 2	coord: 103..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g08690.1	Cp4.1LG05g08690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
molecular_function	GO:0003677	DNA binding