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Cp4.1LG05g08530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAAGCTTTGTTGGTATTCTTTTCAGACGGAGGGGGGGAAGTCTGAAAAAGCCCAAAAAAAAAACCGTAAAGAAAGAAAATAAAAACCCATTCCTCAGTTTTGCGTTCTTTCTAATCTCTCCTTTTCCCTCCCGAGAATTACAGATCTTCTTCGTCTTCTTCTTCTTCTTCGTCGCCGTCGTACTGTGGAGAGAAATGCCGTCCAAGCTCCTCTCTCCAGGTCTTCCTCTCTGTCTTTCCGGCTTCTCTCTCTCTCATCGTTCTCTCTCTACAGAGTATGTTTCTTTAACCTCTTTTTTCTCTCTCTCTCTCTCTCTGTTTTGTGCGAGTAAACTCTGTTTTGTTTTTGTGGTAGGATGGAAGATCATGATCGAAGGAGGGAAGCCATGAGAAGGCGAAGAAGATCATCGAGTGCCGCCGATACAGGAGGAATCGGCTTCACCAGATACATCATCCAAGATATTGGAGATGGAGATCTTCATGATTTGTGTGAAAAAACCAAATTAACTTCGGCTGCAAAAGCCGCTTAAGATTACGAAAACACTGTCCATGATTCCACAATCTCAACTTTTTTGTGTTTGGTTTCGGATCTGTATTTTCATATTTTGTCAAAATCCTGATTTGGAGCTTCATGTATTGTTCTTCTCCTATGTTTCCAACTTTACTGGATGATGGTTCAATGTAATCCTCTTCTAATTTTACTTTCCATCTTTTTTGGAGTTGGAGTTGGTTTTGGCTCTAAATT TGAAGCTTTGTTGGTATTCTTTTCAGACGGAGGGGGGGAAGTCTGAAAAAGCCCAAAAAAAAAACCGTAAAGAAAGAAAATAAAAACCCATTCCTCAGTTTTGCGTTCTTTCTAATCTCTCCTTTTCCCTCCCGAGAATTACAGATCTTCTTCGTCTTCTTCTTCTTCTTCGTCGCCGTCGTACTGTGGAGAGAAATGCCGTCCAAGCTCCTCTCTCCAGGTCTTCCTCTCTGTCTTTCCGGCTTCTCTCTCTCTCATCGTTCTCTCTCTACAGAGATGGAAGATCATGATCGAAGGAGGGAAGCCATGAGAAGGCGAAGAAGATCATCGAGTGCCGCCGATACAGGAGGAATCGGCTTCACCAGATACATCATCCAAGATATTGGAGATGGAGATCTTCATGATTTGTGTGAAAAAACCAAATTAACTTCGGCTGCAAAAGCCGCTTAAGATTACGAAAACACTGTCCATGATTCCACAATCTCAACTTTTTTGTGTTTGGTTTCGGATCTGTATTTTCATATTTTGTCAAAATCCTGATTTGGAGCTTCATGTATTGTTCTTCTCCTATGTTTCCAACTTTACTGGATGATGGTTCAATGTAATCCTCTTCTAATTTTACTTTCCATCTTTTTTGGAGTTGGAGTTGGTTTTGGCTCTAAATT ATGCCGTCCAAGCTCCTCTCTCCAGGTCTTCCTCTCTGTCTTTCCGGCTTCTCTCTCTCTCATCGTTCTCTCTCTACAGAGATGGAAGATCATGATCGAAGGAGGGAAGCCATGAGAAGGCGAAGAAGATCATCGAGTGCCGCCGATACAGGAGGAATCGGCTTCACCAGATACATCATCCAAGATATTGGAGATGGAGATCTTCATGATTTGTGTGAAAAAACCAAATTAACTTCGGCTGCAAAAGCCGCTTAA MPSKLLSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRRSSSAADTGGIGFTRYIIQDIGDGDLHDLCEKTKLTSAAKAA Homology
BLAST of Cp4.1LG05g08530 vs. NCBI nr
Match: XP_023006923.1 (uncharacterized protein LOC111499567 [Cucurbita maxima]) HSP 1 Score: 150 bits (379), Expect = 2.06e-45 Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. NCBI nr
Match: KAG6605527.1 (hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035464.1 hypothetical protein SDJN02_02260 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 149 bits (376), Expect = 5.90e-45 Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. NCBI nr
Match: KGN47309.1 (hypothetical protein Csa_022984 [Cucumis sativus]) HSP 1 Score: 65.1 bits (157), Expect = 1.23e-11 Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. NCBI nr
Match: KAA0035320.1 (hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK14318.1 hypothetical protein E5676_scaffold84G00460 [Cucumis melo var. makuwa]) HSP 1 Score: 62.8 bits (151), Expect = 1.00e-10 Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. NCBI nr
Match: RXI04533.1 (hypothetical protein DVH24_038807 [Malus domestica]) HSP 1 Score: 57.8 bits (138), Expect = 1.51e-08 Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. ExPASy TrEMBL
Match: A0A6J1L6A3 (uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567 PE=4 SV=1) HSP 1 Score: 150 bits (379), Expect = 9.96e-46 Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. ExPASy TrEMBL
Match: A0A0A0KEP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 5.95e-12 Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. ExPASy TrEMBL
Match: A0A5D3CSY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00460 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 4.84e-11 Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. ExPASy TrEMBL
Match: A0A498KGC9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_038807 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 7.30e-09 Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. ExPASy TrEMBL
Match: A0A5N5GH22 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_021403 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 5.87e-08 Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 0
BLAST of Cp4.1LG05g08530 vs. TAIR 10
Match: AT5G60400.3 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 41.2 bits (95), Expect = 4.8e-04 Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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