![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Cp4.1LG05g08210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAGAGGCACGTCTCAATCCCAATCCGCATCATCCTCCACCTCCAGGCCTGGCGTTGTGGCTCCTCGCGGCTCCGCGGCGGCGACGGCTGGTCTTCGCCGTCGCCGTCTCGGCTCCACTTCTGGTGCCGGCACCACTGGACTTGTTTCTGGCGGATCAAGTGGCGGCGGCAACATGCTGAGGTTCTACACTGACGATGCTCCTGGTTTGAAGATTTCTCCGACCGTCGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACTGGCCTCCACGTCTTCGGTAAGCTCTATCGCGCGCGATCCGCCGCGGGAGTTTAA ATGGCTAGAGGCACGTCTCAATCCCAATCCGCATCATCCTCCACCTCCAGGCCTGGCGTTGTGGCTCCTCGCGGCTCCGCGGCGGCGACGGCTGGTCTTCGCCGTCGCCGTCTCGGCTCCACTTCTGGTGCCGGCACCACTGGACTTGTTTCTGGCGGATCAAGTGGCGGCGGCAACATGCTGAGGTTCTACACTGACGATGCTCCTGGTTTGAAGATTTCTCCGACCGTCGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACTGGCCTCCACGTCTTCGGTAAGCTCTATCGCGCGCGATCCGCCGCGGGAGTTTAA ATGGCTAGAGGCACGTCTCAATCCCAATCCGCATCATCCTCCACCTCCAGGCCTGGCGTTGTGGCTCCTCGCGGCTCCGCGGCGGCGACGGCTGGTCTTCGCCGTCGCCGTCTCGGCTCCACTTCTGGTGCCGGCACCACTGGACTTGTTTCTGGCGGATCAAGTGGCGGCGGCAACATGCTGAGGTTCTACACTGACGATGCTCCTGGTTTGAAGATTTCTCCGACCGTCGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACTGGCCTCCACGTCTTCGGTAAGCTCTATCGCGCGCGATCCGCCGCGGGAGTTTAA MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV Homology
BLAST of Cp4.1LG05g08210 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 8.9e-16 Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy Swiss-Prot
Match: A8I6P9 (Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=3055 GN=SEC61B PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07 Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 8.3e-06 Identity = 38/97 (39.18%), Postives = 50/97 (51.55%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy Swiss-Prot
Match: P60468 (Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 8.3e-06 Identity = 38/97 (39.18%), Postives = 50/97 (51.55%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy Swiss-Prot
Match: Q9CQS8 (Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b PE=1 SV=3) HSP 1 Score: 51.2 bits (121), Expect = 8.3e-06 Identity = 38/97 (39.18%), Postives = 50/97 (51.55%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. NCBI nr
Match: XP_022958107.1 (protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532.1 protein transport protein Sec61 subunit beta [Cucurbita maxima] >XP_023534505.1 protein transport protein Sec61 subunit beta [Cucurbita pepo subsp. pepo] >KAG7013903.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 197 bits (501), Expect = 2.80e-63 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. NCBI nr
Match: XP_038902812.1 (protein transport protein Sec61 subunit beta [Benincasa hispida]) HSP 1 Score: 182 bits (462), Expect = 2.49e-57 Identity = 99/107 (92.52%), Postives = 101/107 (94.39%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. NCBI nr
Match: XP_022140347.1 (protein transport protein Sec61 subunit beta [Momordica charantia]) HSP 1 Score: 177 bits (448), Expect = 3.40e-55 Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. NCBI nr
Match: XP_004149541.1 (protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypothetical protein Csa_023023 [Cucumis sativus]) HSP 1 Score: 174 bits (441), Expect = 4.23e-54 Identity = 96/109 (88.07%), Postives = 102/109 (93.58%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. NCBI nr
Match: XP_008463929.1 (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA0035333.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa] >TYK14304.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa]) HSP 1 Score: 174 bits (440), Expect = 6.01e-54 Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy TrEMBL
Match: A0A6J1JZ65 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111491039 PE=3 SV=1) HSP 1 Score: 197 bits (501), Expect = 1.36e-63 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy TrEMBL
Match: A0A6J1H102 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111459432 PE=3 SV=1) HSP 1 Score: 197 bits (501), Expect = 1.36e-63 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy TrEMBL
Match: A0A6J1CGL0 (Protein transport protein Sec61 subunit beta OS=Momordica charantia OX=3673 GN=LOC111011042 PE=3 SV=1) HSP 1 Score: 177 bits (448), Expect = 1.65e-55 Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy TrEMBL
Match: A0A0A0KHR1 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G293930 PE=3 SV=1) HSP 1 Score: 174 bits (441), Expect = 2.05e-54 Identity = 96/109 (88.07%), Postives = 102/109 (93.58%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. ExPASy TrEMBL
Match: A0A5D3CTD4 (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00270 PE=3 SV=1) HSP 1 Score: 174 bits (440), Expect = 2.91e-54 Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. TAIR 10
Match: AT5G60460.1 (Preprotein translocase Sec, Sec61-beta subunit protein ) HSP 1 Score: 131.3 bits (329), Expect = 4.5e-31 Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein ) HSP 1 Score: 84.3 bits (207), Expect = 6.3e-17 Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein ) HSP 1 Score: 84.3 bits (207), Expect = 6.3e-17 Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein ) HSP 1 Score: 84.3 bits (207), Expect = 6.3e-17 Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Cp4.1LG05g08210 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein ) HSP 1 Score: 84.3 bits (207), Expect = 6.3e-17 Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|