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Cp4.1LG05g08180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTGGTTGTTTTAATTTTTTTTAGAATTTAAAATAATTAAAAAAAATGTAGAATCTACATTGAAATAATGTATTCTAAATTTAAATTGAGATTCTAACCCAAATTAAAAAAAAAAAAAAAAAAGTTGTATTAATAATTAATCCATTCTTATTATCATTTTTTTGGGCCGATTGTACGGGCCGCCCAAATCGGCCCAACGGAGGGCCCAAAAACACAAAATCATGGTTAAATCCGTCGTGACAAAGAACCCAAACACCGAACTTTAACAATGGCTTCGACCAAAAAATCAAGTACCGAAATCAAGAGCAAAGAAGCGGGAACGTCGAAGCCAGCTACCAAAACCACCAAAACCCTCAACGCCAGAAAATCAGATAAGAACGATTCGAAGAAGAAGAAGAAGAAGATTTACAGCAATAAGCATTCGAATAATGGCTCTGTGAAGGAGGACGACGCCGTATTTATTTCTGCTCCAGGTTCCGCGTCGGAAGAGGAGGATGCCGGCGAGGAAAGAGCCGAAACCACAAGTAAAAAAGCCAAGACCTCGAAATCGAAGGTAGGAAAGTGGAACCATGTGAAGAAAGAAGAGAATGGATATGCAGAACAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGTCCAGGAGAAGATTTATACATTCCCTATGCAGCGGATCAAGAAAATCACGAGGGATGAAAATTCTGACTTTCGTATAAATCAGGAAGCTCTATTTCTCGTCAACAAAGCTACGGTAAGCCCTCACCACTTCCCCCACACGCGCAAGCACCCTAAATTGTATGATTTTAGCTCTATTTGAAGAATTAGGTATTTTCTCGTTGGTGGAATTGTTTCTAAAATTTGATCTGCTTATGTCTGCAAACTTCTTCACTGGTGCAGGAGATGTTTCTTTTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCGGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTACTCTCTATTCTAATGCTGAAGTCTATCTTTATTCGTTGTTATAGTGCGTAAAATGCAATAACTTTGTCCCATCCATTATGGTCAATGCTTATTTGCATCTCTTGCTTGGATTCTCACTGTTTTACCTTTACATTTGTTGTCTGGTTTTGATCTAAAAAGAAGGATAGACCTGTGAATTATATCATAGTATATTTCATACCAATTGTGTATTAGAAAAGGGAAAGCTTGGACCTGAAATAGTGGAGGGGATTACAACTCCACTAGCGTATTCCCATCATGACAGAGCTTTTAACTTTTTTGTGAGCTGCAATGTTTTCTGTTCGTGTACCGCTAGTCGATATTGTCCTCTTTGGGCTTTCCCTCGTATGTTAGGGAGAGGTTTTCACTCCTTTGTAAGGAATGCTTAGTTCCCCTCTCCAACCAATATGGGATCTCACAATTCACCCCCCTACGGGGGACGGCGTCCTCGCTGGCACTCGTTCCCCTCTCCAATCGATGTGGGATCTCACAATCCACTCCCGTTTGGGGCTCAATGTCTTCGTTGGCACACTGCCTGATGTCCACCCTCCTACAGGGCTTAATGTGGGATCTCACAATCCACCCCCTTCAGGGCTTAGCGTCTTCGCAAACACACCACTCGGCTAACACACCACTCGGTGTTCACCGCCCTTTGGTGTCTGGCTCTGATATTGTGAGATCCCACATTAGTTAGAGAGGGGGAACTAAACATTCTTTATAAGGGTGTGAAAACTTCTCGCTAGTTGACACATTTTAATTTCCTTGAGGGGAAGGCCAAAAGGGAAGGCCCAAAGAGGACAATATCTACTAGCGGTGGACTTGGGCAGTTATATTTTCAATCGTGCTTCTTTCTTTCTGTATTCATGCTGCAAAAGTGAATAGCAGCATGATGGTCATTTATTGACGAGTAATATCCACGATCATGGTCATAGGCAAACATGGATTACGACCTTAGATTTAGGTTACTCCAATTACTTGGTTAAGGGACTTGAATTATCAGCCTCTATCTATCATGGTATTCTGTGGAGAATCACTGATTTGTATTATCAGTGCATTACTTTATGCTTTTGAAGAGACAATTTCTAGAATGGCAGTAATAAGATTATCCTCTGTCGTTGCAGCATCAGTAGTTAGCAAAAGGAAACGATATGACTTTCTTTCAGGTACTATTTATACATCCCATCTTCATATTCTCAACTACTATTATAGAGACTCCTCATGAAACGTCACTATTTTTTTCCTCTCCAGATTTTGTCCCTGAAAAATTAAAATTTGAAGATGCAGTAAAGGAGATAGGCATGGCAGAGTCGGGGAAAGGCGAGGCGTCTTGATATTTCAACTCCATACTTCATCTTCTTCTTTGTATGTGTTATATTTAGTCATCTTTATTTTCCTCCGTACAGTTTGTACCTTAATAACAGGAATTCTTACCAAAGTTATTAGCAAAGTTTTTATTTTCTATTTCTTTTGTTTTCTAAGGGGAAAGAAAACTTTAGGACCCTAATTATTTTTTTTTTTGTAACGGTCTAGGCCCACTGCCCACTGCCAGAAGATATTGTCTTCTTTGGGGTTTCCTTCTGGGCTTCCCCTTAGGGCTTTAAAATGCATTTGCTAGGGGAAAGTTCCACACCCTTTAAGGGTGTTTTGTTCTCTTCCCCAACCAATGTGGGACTCTCACATTCCACCCCTTCGGGGCCAACATTCTCGCTGCATTTGTTCCTTTATCCAATCGATATGGGACCACCACCAAATCCACTCCTTTGGAGCTCGGTGTTTCTAACCGATGTGGGACCACCACTAAATCCACCCCTTTTGGAGCCCAGTGTTTTTACGGGCCCATCACCTTGTGTCTATCCCCTTCGGGAAACAACCTCTTCACTGGCACATCGTTCGGTGTTCGGCTCTGTAATATTTGTAACGGCTCAAACCCACCCACTGCTAGCAGATATTGTCCTTTTTGGGCTTAGTTTTCCCTCAAGGCTTTAAAACGTGTTTGATAGGGGAAGAAGGTTTCTACACTCCTGGTATTTCGTTCTTCTCCTCAACCAAGCTGGGACTCTTACATTTTTAGTATCATTCCATTTATCTTATTATGTAATCGTTTTATGTTTCTATGTATGTTCTTAATAACCAGAAAACTACAAAATTTGTTTTCGAAACTACAAAATTTGTTTTCGAAACTACAAAATTTGTTTTCGAAACTACAAAATTTGTTTTCGTTTTCTTTCCCGGGATTGAAATGAGATAGAAGGAAACTATTTTGTTGCTCAAATATATTCCAACTCCAATTTCAACAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ATGCCTGAACCCAAACACCGAACTTTAACAATGGCTTCGACCAAAAAATCAAGTACCGAAATCAAGAGCAAAGAAGCGGGAACGTCGAAGCCAGCTACCAAAACCACCAAAACCCTCAACGCCAGAAAATCAGATAAGAACGATTCGAAGAAGAAGAAGAAGAAGATTTACAGCAATAAGCATTCGAATAATGGCTCTGTGAAGGAGGACGACGCCGTATTTATTTCTGCTCCAGGTTCCGCGTCGGAAGAGGAGGATGCCGGCGAGGAAAGAGCCGAAACCACAAGTAAAAAAGCCAAGACCTCGAAATCGAAGGTAGGAAAGTGGAACCATGTGAAGAAAGAAGAGAATGGATATGCAGAACAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGTCCAGGAGAAGATTTATACATTCCCTATGCAGCGGATCAAGAAAATCACGAGGGATGAAAATTCTGACTTTCGTATAAATCAGGAAGCTCTATTTCTCGTCAACAAAGCTACGGAGATGTTTCTTTTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCGGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTAGCAAAAGGAAACGATATGACTTTCTTTCAGATTTTGTCCCTGAAAAATTAAAATTTGAAGATGCAGTAAAGGAGATAGGCATGGCAGAGTCGGGGAAAGGCGAGGCGTCTTGATATTTCAACTCCATACTTCATCTTCTTCTTTGTATGTGTTATATTTAGTCATCTTTATTTTCCTCCGTACAGTTTGTACCTTAATAACAGGAATTCTTACCAAAGTTATTAGCAAAGTTTTTATTTTCTATTTCTTTTGTTTTCTAAGGGGAAAGAAAACTTTAGGACCCTAATTATTTTTTTTTTTGTAACGGTCTAGGCCCACTGCCCACTGCCAGAAGATATTGTCTTCTTTGGGGTTTCCTTCTGGGCTTCCCCTTAGGGCTTTAAAATGCATTTGCTAGGGGAAAGTTCCACACCCTTTAAGGGTGTTTTGTTCTCTTCCCCAACCAATGTGGGACTCTCACATTCCACCCCTTCGGGGCCAACATTCTCGCTGCATTTGTTCCTTTATCCAATCGATATGGGACCACCACCAAATCCACTCCTTTGGAGCTCGGTGTTTCTAACCGATGTGGGACCACCACTAAATCCACCCCTTTTGGAGCCCAGTGTTTTTACGGGCCCATCACCTTGTGTCTATCCCCTTCGGGAAACAACCTCTTCACTGGCACATCGTTCGGTGTTCGGCTCTGTAATATTTGTAACGGCTCAAACCCACCCACTGCTAGCAGATATTGTCCTTTTTGGGCTTAGTTTTCCCTCAAGGCTTTAAAACGTGTTTGATAGGGGAAGAAGGTTTCTACACTCCTGGTATTTCGTTCTTCTCCTCAACCAAGCTGGGACTCTTACATTTTTAGTATCATTCCATTTATCTTATTATGTAATCGTTTTATGTTTCTATGTATGTTCTTAATAACCAGAAAACTACAAAATTTGTTTTCGAAACTACAAAATTTGTTTTCGAAACTACAAAATTTGTTTTCGAAACTACAAAATTTGTTTTCGTTTTCTTTCCCGGGATTGAAATGAGATAGAAGGAAACTATTTTGTTGCTCAAATATATTCCAACTCCAATTTCAACAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ATGCCTGAACCCAAACACCGAACTTTAACAATGGCTTCGACCAAAAAATCAAGTACCGAAATCAAGAGCAAAGAAGCGGGAACGTCGAAGCCAGCTACCAAAACCACCAAAACCCTCAACGCCAGAAAATCAGATAAGAACGATTCGAAGAAGAAGAAGAAGAAGATTTACAGCAATAAGCATTCGAATAATGGCTCTGTGAAGGAGGACGACGCCGTATTTATTTCTGCTCCAGGTTCCGCGTCGGAAGAGGAGGATGCCGGCGAGGAAAGAGCCGAAACCACAAGTAAAAAAGCCAAGACCTCGAAATCGAAGGTAGGAAAGTGGAACCATGTGAAGAAAGAAGAGAATGGATATGCAGAACAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGTCCAGGAGAAGATTTATACATTCCCTATGCAGCGGATCAAGAAAATCACGAGGGATGAAAATTCTGACTTTCGTATAAATCAGGAAGCTCTATTTCTCGTCAACAAAGCTACGGAGATGTTTCTTTTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCGGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTAGCAAAAGGAAACGATATGACTTTCTTTCAGATTTTGTCCCTGAAAAATTAAAATTTGAAGATGCAGTAAAGGAGATAGGCATGGCAGAGTCGGGGAAAGGCGAGGCGTCTTGA MPEPKHRTLTMASTKKSSTEIKSKEAGTSKPATKTTKTLNARKSDKNDSKKKKKKIYSNKHSNNGSVKEDDAVFISAPGSASEEEDAGEERAETTSKKAKTSKSKVGKWNHVKKEENGYAEQEEEEEEEEEEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAVKEIGMAESGKGEAS Homology
BLAST of Cp4.1LG05g08180 vs. ExPASy Swiss-Prot
Match: Q6BX14 (DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DPB3 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08 Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05 Identity = 27/86 (31.40%), Postives = 48/86 (55.81%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy Swiss-Prot
Match: Q9JKP8 (Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05 Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.4e-05 Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy Swiss-Prot
Match: Q8LCG7 (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2) HSP 1 Score: 46.6 bits (109), Expect = 4.6e-04 Identity = 31/104 (29.81%), Postives = 55/104 (52.88%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. NCBI nr
Match: XP_023534490.1 (ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 412 bits (1060), Expect = 2.35e-144 Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. NCBI nr
Match: KAG7013901.1 (Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 391 bits (1005), Expect = 5.25e-136 Identity = 220/229 (96.07%), Postives = 223/229 (97.38%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. NCBI nr
Match: XP_022958105.1 (DNA polymerase epsilon subunit C-like [Cucurbita moschata]) HSP 1 Score: 383 bits (983), Expect = 9.87e-133 Identity = 215/229 (93.89%), Postives = 221/229 (96.51%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. NCBI nr
Match: XP_022995531.1 (transcriptional activator HAP5-like [Cucurbita maxima]) HSP 1 Score: 373 bits (958), Expect = 7.32e-129 Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. NCBI nr
Match: KAG6605541.1 (Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 314 bits (804), Expect = 6.04e-106 Identity = 185/229 (80.79%), Postives = 187/229 (81.66%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy TrEMBL
Match: A0A6J1H2H8 (DNA polymerase epsilon subunit C-like OS=Cucurbita moschata OX=3662 GN=LOC111459429 PE=4 SV=1) HSP 1 Score: 383 bits (983), Expect = 4.78e-133 Identity = 215/229 (93.89%), Postives = 221/229 (96.51%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy TrEMBL
Match: A0A6J1K264 (transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 PE=4 SV=1) HSP 1 Score: 373 bits (958), Expect = 3.54e-129 Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1) HSP 1 Score: 295 bits (756), Expect = 2.26e-98 Identity = 181/234 (77.35%), Postives = 196/234 (83.76%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1) HSP 1 Score: 278 bits (712), Expect = 1.03e-91 Identity = 172/233 (73.82%), Postives = 186/233 (79.83%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1) HSP 1 Score: 277 bits (708), Expect = 3.40e-91 Identity = 167/227 (73.57%), Postives = 187/227 (82.38%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 ) HSP 1 Score: 81.6 bits (200), Expect = 9.1e-16 Identity = 82/222 (36.94%), Postives = 125/222 (56.31%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. TAIR 10
Match: AT1G56170.1 (nuclear factor Y, subunit C2 ) HSP 1 Score: 46.6 bits (109), Expect = 3.3e-05 Identity = 31/104 (29.81%), Postives = 55/104 (52.88%), Query Frame = 0
BLAST of Cp4.1LG05g08180 vs. TAIR 10
Match: AT1G56170.2 (nuclear factor Y, subunit C2 ) HSP 1 Score: 46.6 bits (109), Expect = 3.3e-05 Identity = 31/104 (29.81%), Postives = 55/104 (52.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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