Cp4.1LG05g07860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g07860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 4855055 .. 4857279 (+)
RNA-Seq ExpressionCp4.1LG05g07860
SyntenyCp4.1LG05g07860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTCCGCCTCCATCTACCCTTTTCTTCTCGCTACTTTTATGTACTTCGATCAATGATGATCTTCCTAAACCGAGAAAATCCTTTATACCCATATGAAAATCGTCGCGTGTTTTTTCTTTTTCTTTTCTAGCTGGTGTTTGTATTCGATCGTTTTCCTTCTGTTCTGTTCGTTGATTCTTGACTTGTTCTTTGACTTCACCTGTATTTATTGCTGTGGTTTGTGCCTTCGTTTGATTTCTGTTTGACTGCTTGGAGCTGGGTTTTTTCTGTTTAGCATGATCAGATCTTTGTTCTTATGGTTTGGGTTTTATTTGCCTGTTTTAGCTTGTTGATGGAGAACCTGGTGCACTCATGTGGACTAAATGTGTTTGTTATTAATTGGTTTTCTACATTTGAGTAGCAATTTGTTAACCTAGATTTTGAAATGTAATGAAACAGATTAGCTAACCAAGCCTCAGGGTCAGAGTTTAGAATGAAACCTAATTCAAAGATATCTATATGGGAGGGGAATTTATTTTTGTGCCTTTTCTGCTTCTATTAAGTCCTGAGTATCTAAGCACTAATTTAAGAAACCCTTCTATATGCTTCTATGTCAATTTCATGTCTTTTCCATTTCAAAGTTGACTCAAAACCGACTTGACAAGCACTCCAAATATTGCTACTACCTCTTTGAAAAGAGAGAAAAAAAGAAGGGTTAGGCAATGTATTGAAGTTGTGTATTTGTAGCTTACTTGTTTTAATAGACATGGATGATCATTAACGAGTTGAATTACCGTATAATAGACATTGATGATCTTTAACTCACTTTCCCCTCTTTTGATGCTTGGACGGTCAGTGTCTTTGTTGTTATTTGAATGGTTGGGTTTTAATAGACGTGGATGATCATTAACGAGTTGAAATATCGTATAATATCGATCGTTGAATGCTGTCTTGGTGTTGTATTTTCTAAAGTTGTCTGTCAAGTCATTTTATGGAAGTACTAAATACTGAAGAATGTTTACAGGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGGTAACGTATTCCTATTTGGTTATTGCCTTGGTTTTTTCTTCTAATGCAATGTGCTTCAAGCATTCAATTTGGACCTTTCTTGTTGCAAGAAATGAATCAAATCGACATGAGATACAAACCTTAAGCCTTAAAAGAAATCCCAGCTGTTTGGTCGGAAAGCATGAGTCGTTGGTTTGTGTTTTAGAAAGTCGTCTTCGGTTCATTATAGTTTGTTCGTCAATGGAATATGGAGTTGATACTTTTTCATTGAGTATTACTTAGATGTAGTGATGTTAACTTCTAGCATGTCGACCACTTTGGACTTCAAGATTTAATATTATACAAATTACCGGTGTAGGAAGGTTAGACGATTGGCTCGTGAGAATAGTTAAACACCCCGGATACTTTAAATTTAAAACATTCTAACATATGTAAGTACATTTAGCAACAAGGCTGTTCAAAATTTGAGTCCTAGAATGAATGAGGCTTCTTCTATGAATCATTTACTCCCTGTTTTGCTTTTTACTCACAAATTGTTCGACTTATTTGCAGCTGGGTGGATGCATCTGATGAGCTTTGAGAGTGAAATATAGTATGGTTGTGGACATTCTTTTCTTATATTTAAAGTTTTAGCTTCCAGCATTGAACTTTCTATCAGTATCATCATATCATAATATTGTGAAATTTCTATATGCAAAAGAAATGTTCTTTATTAAGAGGAAAGGAAATGCAGTTTGGACACGACACCCATTTTGCTTTATTTATTCCTGTGCTGTTTACCAAACAGGTGTTGGGATATTATTATCGGTACAAAGAAGGGCTTTTTCTTTTTTTAATAATGTGGAATGGAATTTGGAATAATACAATAAATTTCTTTTCGATCTAGAATAATATTAAATTCTTCAATTTTGTAATTTAATTGTATTGATAAGATTAAGAGTGAGTAATTATGTGATGATGCTATGAAATAGTGGAAAAGGAAACATTAATTTTATATTAATTATCATTATTATAATCCTTTT

mRNA sequence

ATGGGTGGAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTCCGCCTCCATCTACCCTTTTCTTCTCGCTACTTTTATGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGCTGGGTGGATGCATCTGATGAGCTTTGAGAGTGAAATATAGTATGGTTGTGGACATTCTTTTCTTATATTTAAAGTTTTAGCTTCCAGCATTGAACTTTCTATCAGTATCATCATATCATAATATTGTGAAATTTCTATATGCAAAAGAAATGTTCTTTATTAAGAGGAAAGGAAATGCAGTTTGGACACGACACCCATTTTGCTTTATTTATTCCTGTGCTGTTTACCAAACAGGTGTTGGGATATTATTATCGGTACAAAGAAGGGCTTTTTCTTTTTTTAATAATGTGGAATGGAATTTGGAATAATACAATAAATTTCTTTTCGATCTAGAATAATATTAAATTCTTCAATTTTGTAATTTAATTGTATTGATAAGATTAAGAGTGAGTAATTATGTGATGATGCTATGAAATAGTGGAAAAGGAAACATTAATTTTATATTAATTATCATTATTATAATCCTTTT

Coding sequence (CDS)

ATGGGTGGAGCTCAGGCCCTCAAGAGGATCCCTCGCATCAAGTTCCCCAAGCGACATCCAAACCCCTCTGGTCCGCCTCCATCTACCCTTTTCTTCTCGCTACTTTTATGTTCTACTTCTCAGACTCCAACAAGCATTGGGGTGGATGATCAAGTCTTATTCTTATCTTTAAATGAAAAGGCATCCAAAACTATTGGAGGAAAAGCTTCCCTTCAGCCTAAAAGGACTCCAATGTCCAATGAGGAGATTGAAGCTATTTTGCTGGGTGGATGCATCTGA

Protein sequence

MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEKASKTIGGKASLQPKRTPMSNEEIEAILLGGCI
Homology
[Close]
BLAST of Cp4.1LG05g07860 vs. NCBI nr
Match: XP_023534508.1 (uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 hypothetical protein SDJN03_02911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (378), Expect = 3.73e-45
Identity = 79/92 (85.87%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MGGAQALKRIPRIKFPKRHPNPSG             STSQTPTSIGVDDQVLFLSLNEK
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSG-------------STSQTPTSIGVDDQVLFLSLNEK 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
          ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI
Sbjct: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 79

[Close]
BLAST of Cp4.1LG05g07860 vs. NCBI nr
Match: XP_022958002.1 (uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 uncharacterized protein LOC111491585 [Cucurbita maxima])

HSP 1 Score: 146 bits (369), Expect = 8.80e-44
Identity = 78/92 (84.78%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MG AQALKRIPRIKFPKRHPNPSG             STSQTPTSIGVDDQVLFLSLNEK
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSG-------------STSQTPTSIGVDDQVLFLSLNEK 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
          ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI
Sbjct: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 79

[Close]
BLAST of Cp4.1LG05g07860 vs. NCBI nr
Match: KAG7035504.1 (hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139 bits (350), Expect = 8.06e-41
Identity = 74/88 (84.09%), Postives = 75/88 (85.23%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MGGAQALKRIPRIKFPKRHPNPSG             STSQTPTSIGVDDQVLFLSLNEK
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSG-------------STSQTPTSIGVDDQVLFLSLNEK 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILL 88
          ASKTIGGKASLQPKRTPMSNEEIEAIL+
Sbjct: 61 ASKTIGGKASLQPKRTPMSNEEIEAILV 75

[Close]
BLAST of Cp4.1LG05g07860 vs. NCBI nr
Match: XP_038875405.1 (uncharacterized protein LOC120067868 [Benincasa hispida])

HSP 1 Score: 132 bits (332), Expect = 3.87e-38
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MGGAQA+KRIPRIKFPKRHPNPSG             STS+TP+S GVDDQ+ F SL + 
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSG-------------STSKTPSSSGVDDQIFFSSLEQT 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
          ASKT+GGKASLQPKRTP+SNEEIEAILLGGCI
Sbjct: 61 ASKTVGGKASLQPKRTPLSNEEIEAILLGGCI 79

[Close]
BLAST of Cp4.1LG05g07860 vs. NCBI nr
Match: XP_022156457.1 (uncharacterized protein LOC111023342 [Momordica charantia])

HSP 1 Score: 125 bits (313), Expect = 2.89e-35
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MGGAQA+KRIPRIKFPKRHPNPSG             STSQTP+++GVDDQV+F + N  
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSG-------------STSQTPSNLGVDDQVIFSTGN-- 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
            KT+GGKASLQPKRTPMSNEEIEA+LLGGCI
Sbjct: 61 VLKTVGGKASLQPKRTPMSNEEIEAVLLGGCI 77

[Close]
BLAST of Cp4.1LG05g07860 vs. ExPASy TrEMBL
Match: A0A6J1K8D8 (uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 4.26e-44
Identity = 78/92 (84.78%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MG AQALKRIPRIKFPKRHPNPSG             STSQTPTSIGVDDQVLFLSLNEK
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSG-------------STSQTPTSIGVDDQVLFLSLNEK 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
          ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI
Sbjct: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 79

[Close]
BLAST of Cp4.1LG05g07860 vs. ExPASy TrEMBL
Match: A0A6J1H0Q6 (uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC111459363 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 4.26e-44
Identity = 78/92 (84.78%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MG AQALKRIPRIKFPKRHPNPSG             STSQTPTSIGVDDQVLFLSLNEK
Sbjct: 1  MGVAQALKRIPRIKFPKRHPNPSG-------------STSQTPTSIGVDDQVLFLSLNEK 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
          ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI
Sbjct: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 79

[Close]
BLAST of Cp4.1LG05g07860 vs. ExPASy TrEMBL
Match: A0A6J1DS43 (uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023342 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.40e-35
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MGGAQA+KRIPRIKFPKRHPNPSG             STSQTP+++GVDDQV+F + N  
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSG-------------STSQTPSNLGVDDQVIFSTGN-- 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
            KT+GGKASLQPKRTPMSNEEIEA+LLGGCI
Sbjct: 61 VLKTVGGKASLQPKRTPMSNEEIEAVLLGGCI 77

[Close]
BLAST of Cp4.1LG05g07860 vs. ExPASy TrEMBL
Match: A0A1S3AUJ6 (uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 2.02e-33
Identity = 62/92 (67.39%), Postives = 70/92 (76.09%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MGGAQA+KRIPRIKFPKRHP+ SG             STS+TP+S G DD + F SL + 
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPSSSG-------------STSKTPSSNGGDDHIFFSSLEKD 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
          ASKT+GGKASLQPKR P+SNEEIEAILLGGCI
Sbjct: 61 ASKTVGGKASLQPKRIPLSNEEIEAILLGGCI 79

[Close]
BLAST of Cp4.1LG05g07860 vs. ExPASy TrEMBL
Match: A0A0A0KMD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 5.79e-33
Identity = 63/92 (68.48%), Postives = 70/92 (76.09%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          MGGAQA+KRIPRIKFPKRH + SG             STS+TP+S G DD V F SL + 
Sbjct: 1  MGGAQAIKRIPRIKFPKRHLSSSG-------------STSKTPSSHGGDDHVFFSSLEKD 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 92
          ASKT+GGKASLQPKRTP+SNEEIEAILLGGCI
Sbjct: 61 ASKTVGGKASLQPKRTPLSNEEIEAILLGGCI 79

[Close]
BLAST of Cp4.1LG05g07860 vs. TAIR 10
Match: AT4G23885.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 46/92 (50.00%), Postives = 53/92 (57.61%), Query Frame = 0 

Query: 1  MGGAQALKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSIGVDDQVLFLSLNEK 60
          M     LKRIPRIKFP+RH NP               S S+  + +  +   LF S    
Sbjct: 1  MNVVHGLKRIPRIKFPQRHINP---------------SASEGKSQVANEADTLFFSNLNN 60

Query: 61 ASKTIGGKASLQPKRTPMSNEEIEAILLGGCI 93
            KT GGKAS QPKRTP+SNEE+EAILLGGCI
Sbjct: 61 IQKTTGGKASSQPKRTPVSNEEMEAILLGGCI 77

[Close]
BLAST of Cp4.1LG05g07860 vs. TAIR 10
Match: AT5G24165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 9.0e-12
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 0 

Query: 7  LKRIPRIKFPKRHPNPSGPPPSTLFFSLLLCSTSQTPTSI-GVDDQVLFLSLNEKASKTI 66
          ++RIPRIKFP+RH   SG  P+              P S+ GV   V   S    A K  
Sbjct: 1  MRRIPRIKFPQRHSISSGSGPA--------------PGSVSGVKKNVTASSDVPAAPKNT 60

Query: 67 --GGKASLQPKRTPMSNEEIEAILLGGCI 93
            GGKASLQPKRTP+S++EIE+I+LGGCI
Sbjct: 61 ADGGKASLQPKRTPVSDKEIESIMLGGCI 75

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g07860 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g07860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023534508.13.73e-4585.87uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 ... [more]
XP_022958002.18.80e-4484.78uncharacterized protein LOC111459363 [Cucurbita moschata] >XP_022996319.1 unchar... [more]
KAG7035504.18.06e-4184.09hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038875405.13.87e-3872.83uncharacterized protein LOC120067868 [Benincasa hispida][more]
XP_022156457.12.89e-3570.65uncharacterized protein LOC111023342 [Momordica charantia][more]
BLAST of Cp4.1LG05g07860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K8D84.26e-4484.78uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585... [more]
A0A6J1H0Q64.26e-4484.78uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC1114593... [more]
A0A6J1DS431.40e-3570.65uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A1S3AUJ62.02e-3367.39uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=... [more]
A0A0A0KMD85.79e-3368.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1[more]
BLAST of Cp4.1LG05g07860 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23885.11.2e-1650.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G24165.19.0e-1248.31unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR35751FAMILY NOT NAMEDcoord: 2..92
NoneNo IPR availablePANTHERPTHR35751:SF3OS06G0530200 PROTEINcoord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g07860.1Cp4.1LG05g07860.1mRNA