Cp4.1LG05g06740 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g06740
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG05: 4020598 .. 4022795 (-)
RNA-Seq Expression	Cp4.1LG05g06740
Synteny	Cp4.1LG05g06740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCCTTTTAATTAAATTTCACAAACACTCTCCATGGGGAAACCCTAGCGGTCTCCCGCTTCGTCGTAGCACCTTAGCTTAGTAATTTGGTCGGCCAATCCATGATGTTGAGCGATAATCGGCAACAGTCCATGGCATTGCATTGAGTATCCTAAAATGTTCCGAATTTCAGGGCTTAAAGTCTTAAGTTCTGGCAGGAGGGTTGCAGTCACCACCTCTTTCTTCGGCAATCTAGGGTTTCATTGGGACGCCTTATTAAGCTTCAAATTCTTCTCAGTTCTTCCCAGTAATGCATCGTTTGGATCTTTGAAAGATGAGTGTATACATTCTTTCACAGTCTCATACCTCGTCAATTCATGCGGAATGCCATTACAGACTGCTCTGGATGTGGCTTCCAAGGTAAAGTTCAAAACTCCGAAAAACCCTGATATAGTTCTTTCGCTTCTCCGAACTCAAGGATTCACCAAATCTCAGATTTCGAAAATTGTTAAGCAATTCCCGAGATTGCTGTTTTTTAACTCTGATAGAACTCTTTTGCCCAAATTTGAATTTCTGCATTCCATTGGGCTCTCCAAGTCAGACTGTGTTCAGATTGTATATTCATGCCCGTTTCTTTTGGGGAGTAGCGTGAAAAACCATTTAATTCCCTGTTACAACTACCTTAAATCTGTGCTTGTTGTAGATGAAAAGGTCATCAAATGTTTGAAGCGTTCACCAAGGGCATTTCGTCAGGTTTTTCCAGACAAAATTGCACCCAACATTGAATTGTTACGAACTTCTGGAGTTTCTGATGTTTTGATTTCATCTTTGGTTTCGAATGTTCCTGATTCAGCATTCCGTAGGCATTCCAAATTCCGCAGCATTGTTAACCAAGTTAGGGATATGGGATTCGACCCTTCAAAAGTTGTGTTTGTTGAGGCCATTAGAGTGCTCTCCGGGATGAGTTCTCTCACCTGGGAAAGAAAATTTAAAGCTTACAGTAAGTATGGTTGGTCAAAGGATCAGACCCTCTTAGCTTTTAAGAAGTTTCCACCATGTTTGAGTGTTTCTGAAGAGAAGATCTTCAAGAACATGGACTTTTTTGTGCACAAAATGGGTTTGATGGCTGTGGATATTGCTACAAAACCCACTGTGATGGTCTTTAGTTTGGAGAAGAGGATAATACCAAGGTGTTCTGTTGTCCAAAGTCTGTATTCAAAAGGTTTATTAAAGAAAAAATTGAGCATCGCTAGCATCTTACATCCTACAGAAAAGACTTTCCTGGAGAAGTATGTGACCAAGTTTCCTAACGATGCTACTTGGCTGTTGCATTTGTATACTGGAGAGGTCAAAATCTTTGATGTTTAACCTTAATTTTTTTTTTTGGTCCTTGATTCATTGATTGCTATGGTCCATTTTCTTGGATGAACTCTTAACTTTTTGGCTCAATATTACATTTTTGGTGTCTGTTTAAATGAAGCTTTTTGTTTCTTCTTGCCTTGAATTTTGCCTGCTCAAGTGCTCCCATTGTAAGTAAATATTGTCCGTTTTGACAGGTTACATATCACTTTTTGACATGTTACATATCACTTTTTGACTTGTTACGTATCACTGCTAGCCTCACTGCTTTAGAACGCATCTACTAGAGAGAGGTTTCCACACTCTTATAAGGAATGTTTTGTTCCCCTCTCTAACCAACGTGGGATCTCACAACCCACCCCTTGGAGCCCAACGTCGGTTTCCACACCCTTTATAAGGAATGTTTTGTTCCCCTCTGTAACCAATGTGGGATCTCACAATCCACACCTTGGAGCCCAACGTCCTCACTCGCACACCGTCTGGTGTCTGACTCTGATACCATTTGTAACAACCCAAACTCACCTGTTATGTATTGTCGTTCTCCTCACGGTTTTAAAACGTGTTTATTAGGGAAACCTCCACACCCTTAAAGAATGTTTTGTTCCTCTCTCCAGCCAAAATGAGATCTCCGCCTTTGTACAATTTTCAAGCATGTGTAATGCTGTTAATTTTGTAGACTTAAGATGATTTCCTGTAAATATGTTGTTTTGCTGAGTTATTTGAGTTGGATTGGCTGATTCTTTACACCATTACTTCACTTTCAGTAACGCAGGTTGAAGATATGGAAAATCTGGAGAGATCCCTCTTCCAGTGCACCATGTCTCTCCATCTCATCCATCAATGTCCTCCTGCTTCTACT

mRNA sequence

AACCCCTTTTAATTAAATTTCACAAACACTCTCCATGGGGAAACCCTAGCGGTCTCCCGCTTCGTCGTAGCACCTTAGCTTAGTAATTTGGTCGGCCAATCCATGATGTTGAGCGATAATCGGCAACAGTCCATGGCATTGCATTGAGTATCCTAAAATGTTCCGAATTTCAGGGCTTAAAGTCTTAAGTTCTGGCAGGAGGGTTGCAGTCACCACCTCTTTCTTCGGCAATCTAGGGTTTCATTGGGACGCCTTATTAAGCTTCAAATTCTTCTCAGTTCTTCCCAGTAATGCATCGTTTGGATCTTTGAAAGATGAGTGTATACATTCTTTCACAGTCTCATACCTCGTCAATTCATGCGGAATGCCATTACAGACTGCTCTGGATGTGGCTTCCAAGGTCATCAAATGTTTGAAGCGTTCACCAAGGGCATTTCGTCAGGTTGAAGATATGGAAAATCTGGAGAGATCCCTCTTCCAGTGCACCATGTCTCTCCATCTCATCCATCAATGTCCTCCTGCTTCTACT

Coding sequence (CDS)

ATGTTCCGAATTTCAGGGCTTAAAGTCTTAAGTTCTGGCAGGAGGGTTGCAGTCACCACCTCTTTCTTCGGCAATCTAGGGTTTCATTGGGACGCCTTATTAAGCTTCAAATTCTTCTCAGTTCTTCCCAGTAATGCATCGTTTGGATCTTTGAAAGATGAGTGTATACATTCTTTCACAGTCTCATACCTCGTCAATTCATGCGGAATGCCATTACAGACTGCTCTGGATGTGGCTTCCAAGGTCATCAAATGTTTGAAGCGTTCACCAAGGGCATTTCGTCAGGTTGAAGATATGGAAAATCTGGAGAGATCCCTCTTCCAGTGCACCATGTCTCTCCATCTCATCCATCAATGTCCTCCTGCTTCTACT

Protein sequence

MFRISGLKVLSSGRRVAVTTSFFGNLGFHWDALLSFKFFSVLPSNASFGSLKDECIHSFTVSYLVNSCGMPLQTALDVASKVIKCLKRSPRAFRQVEDMENLERSLFQCTMSLHLIHQCPPAST

Homology

[Close]

BLAST of Cp4.1LG05g06740 vs. NCBI nr
Match: XP_038888917.1 (uncharacterized protein LOC120078689 isoform X2 [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 9.28e-24
Identity = 53/84 (63.10%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1  MFRISGLKVLSSGRRVAVTTSFFGNLGFHWDALLSFKFFSVLPSNASFGSLKDECI--HS 60
          MFRI G K+ +S RR A TT+ F NLGFH DA  + KFFS LP   S G+L D  +  H 
Sbjct: 6  MFRILGPKLPNSTRRTAFTTTLFDNLGFHRDAPFTSKFFSSLPDKGSLGALGDGVLQLHG 65

Query: 61 FTVSYLVNSCGMPLQTALDVASKV 82
          FTVSYLVNSCGMPLQTAL+VASK+
Sbjct: 66 FTVSYLVNSCGMPLQTALEVASKL 89

[Close]

BLAST of Cp4.1LG05g06740 vs. NCBI nr
Match: KAG7035624.1 (Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 4.62e-19
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 39 FSVLPSNASFGSLKDECIHSFTVSYLVNSCGMPLQTALDVASKV 82
          FSVLPSNASFGSLKDECIHSFTVSYLVNSCGMPLQTALDVASKV
Sbjct: 24 FSVLPSNASFGSLKDECIHSFTVSYLVNSCGMPLQTALDVASKV 67

[Close]

BLAST of Cp4.1LG05g06740 vs. NCBI nr
Match: XP_022156115.1 (uncharacterized protein LOC111023077 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 9.15e-13
Identity = 48/83 (57.83%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 1  MFRISGLKVLS-SGRRVAVTTSFFGNLGFHWDALLSFKFFSVLPSNASFGSLKDECIHSF 60
          MFRI GLK+ S S RR+AV TSFF NLGF  D     KFFSVL    SF         S 
Sbjct: 1  MFRILGLKIFSPSSRRIAVATSFFNNLGFQRDD----KFFSVLADKGSFE-------RSS 60

Query: 61 TVSYLVNSCGMPLQTALDVASKV 82
           V YLVNSCGM  +TALDVA+KV
Sbjct: 61 IVLYLVNSCGMASETALDVAAKV 72

[Close]

BLAST of Cp4.1LG05g06740 vs. ExPASy TrEMBL
Match: A0A6J1DPE0 (uncharacterized protein LOC111023077 OS=Momordica charantia OX=3673 GN=LOC111023077 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.43e-13
Identity = 48/83 (57.83%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 1  MFRISGLKVLS-SGRRVAVTTSFFGNLGFHWDALLSFKFFSVLPSNASFGSLKDECIHSF 60
          MFRI GLK+ S S RR+AV TSFF NLGF  D     KFFSVL    SF         S 
Sbjct: 1  MFRILGLKIFSPSSRRIAVATSFFNNLGFQRDD----KFFSVLADKGSFE-------RSS 60

Query: 61 TVSYLVNSCGMPLQTALDVASKV 82
           V YLVNSCGM  +TALDVA+KV
Sbjct: 61 IVLYLVNSCGMASETALDVAAKV 72

[Close]

BLAST of Cp4.1LG05g06740 vs. ExPASy TrEMBL
Match: A0A2N9EC15 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS157 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.46e-05
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 7  LKVLSSGRRVAVTTSFFGNLGFHWDALLSFKFFSVLPSNASFGSLKDECIHSFTVSYLVN 66
          L++L S R +AV +S   +LGF  + L    +FS    ++SF   +D   H+FTVSYLVN
Sbjct: 9  LQILVSNRSIAVPSSI-SHLGFPQNPLFVVNYFS----SSSFVGPQDAKKHNFTVSYLVN 68

Query: 67 SCGMPLQTALDVASKV 82
          SCG+PL+ A   + ++
Sbjct: 69 SCGLPLERAKHASHRL 79

[Close]

BLAST of Cp4.1LG05g06740 vs. ExPASy TrEMBL
Match: A0A2N9ECB7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS152 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.16e-04
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 7  LKVLSSGRRVAVTTSFFGNLGFHWDALLSFKFFSVLPSNASFGSLKDECIHSFTVSYLVN 66
          L++L   R +AV +S   +LGF  + L    +FS    ++SF   +D   H+FTVSYLVN
Sbjct: 9  LQILVPNRSIAVPSSI-SHLGFPQNPLFVVNYFS----SSSFVGPQDAKKHNFTVSYLVN 68

Query: 67 SCGMPLQTALDVASKV 82
          SCG+PL+ A   + ++
Sbjct: 69 SCGLPLERAKHASHRL 79

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g06740 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g06740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888917.1	9.28e-24	63.10	uncharacterized protein LOC120078689 isoform X2 [Benincasa hispida]	[more]
KAG7035624.1	4.62e-19	100.00	Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argy...	[more]
XP_022156115.1	9.15e-13	57.83	uncharacterized protein LOC111023077 [Momordica charantia]	[more]

BLAST of Cp4.1LG05g06740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPE0	4.43e-13	57.83	uncharacterized protein LOC111023077 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A2N9EC15	2.46e-05	40.79	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS157 PE=3 SV=1	[more]
A0A2N9ECB7	1.16e-04	39.47	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS152 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g06740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g06740.1	Cp4.1LG05g06740.1	mRNA