Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTGAAGCAGAGATGAGGGATTTGGAGTGTGGTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACCAGAGTATAGCCATTTACACCATTCTGGCTTACATTACCAGCCTGCGCTTCTTCTACTCTGCTGTCTCCCCTGCTTCCTCCACCCTCCACTGTGTTCATTGGCCCCTGGTTTCGGCTCTCACTCTTTCCTGCTCATTCCTCTACTTCTTCATCCTGCTGCCGGTTTTCATTAAATTGCACCGCACTCACAACCTGCTGGACGTAATTTGCAAGGAACATGCTGACATCTATCAACGGATCTTGAACGCTAGGAGCCAACATGGTGGGGCTTCTTCAATAGAGGCTGGAGCATCCCCCGATGGGGTCGAGTTCAATTCCAGGTTCCACCAGGTCAGGGCGCTTCACAATGATTCATTCACCGGTGGGGAGATTAAAGTCTACGCATGTGCCATCGCCGTTGCTCTGCTTTCTGTTACTGCTTTTGAACTCTGTGCCTCTAAGTATGTGCTATGCAATTGA
mRNA sequence
ATGGAGCTTGAAGCAGAGATGAGGGATTTGGAGTGTGGTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACCAGAGTATAGCCATTTACACCATTCTGGCTTACATTACCAGCCTGCGCTTCTTCTACTCTGCTGTCTCCCCTGCTTCCTCCACCCTCCACTGTGTTCATTGGCCCCTGGTTTCGGCTCTCACTCTTTCCTGCTCATTCCTCTACTTCTTCATCCTGCTGCCGGTTTTCATTAAATTGCACCGCACTCACAACCTGCTGGACGTAATTTGCAAGGAACATGCTGACATCTATCAACGGATCTTGAACGCTAGGAGCCAACATGGTGGGGCTTCTTCAATAGAGGCTGGAGCATCCCCCGATGGGGTCGAGTTCAATTCCAGGTTCCACCAGGTCAGGGCGCTTCACAATGATTCATTCACCGGTGGGGAGATTAAAGTCTACGCATGTGCCATCGCCGTTGCTCTGCTTTCTGTTACTGCTTTTGAACTCTGTGCCTCTAAGTATGTGCTATGCAATTGA
Coding sequence (CDS)
ATGGAGCTTGAAGCAGAGATGAGGGATTTGGAGTGTGGTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACCAGAGTATAGCCATTTACACCATTCTGGCTTACATTACCAGCCTGCGCTTCTTCTACTCTGCTGTCTCCCCTGCTTCCTCCACCCTCCACTGTGTTCATTGGCCCCTGGTTTCGGCTCTCACTCTTTCCTGCTCATTCCTCTACTTCTTCATCCTGCTGCCGGTTTTCATTAAATTGCACCGCACTCACAACCTGCTGGACGTAATTTGCAAGGAACATGCTGACATCTATCAACGGATCTTGAACGCTAGGAGCCAACATGGTGGGGCTTCTTCAATAGAGGCTGGAGCATCCCCCGATGGGGTCGAGTTCAATTCCAGGTTCCACCAGGTCAGGGCGCTTCACAATGATTCATTCACCGGTGGGGAGATTAAAGTCTACGCATGTGCCATCGCCGTTGCTCTGCTTTCTGTTACTGCTTTTGAACTCTGTGCCTCTAAGTATGTGCTATGCAATTGA
Protein sequence
MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPLVSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAGASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFELCASKYVLCN
Homology
BLAST of Cp4.1LG05g06380 vs. NCBI nr
Match:
KAG6605754.1 (hypothetical protein SDJN03_03071, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 331 bits (848), Expect = 1.78e-113
Identity = 170/177 (96.05%), Postives = 174/177 (98.31%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVS-PASSTLHCVHWP 60
MELEAEMRDLEC AENQQQRVRYY+SIAIYTILAYITSLRFFYSAVS PASSTLHCVHWP
Sbjct: 32 MELEAEMRDLECRAENQQQRVRYYESIAIYTILAYITSLRFFYSAVSSPASSTLHCVHWP 91
Query: 61 LVSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEA 120
LVSALTLSCSFLYFFILLPVFIKL+RTHNLLD+ICKEHADIYQRILN RSQHGGASSIEA
Sbjct: 92 LVSALTLSCSFLYFFILLPVFIKLYRTHNLLDIICKEHADIYQRILNGRSQHGGASSIEA 151
Query: 121 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFELCASKYVLCN 176
GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALL+VTAFELCASKYVLCN
Sbjct: 152 GASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLAVTAFELCASKYVLCN 208
BLAST of Cp4.1LG05g06380 vs. NCBI nr
Match:
KAG6605757.1 (hypothetical protein SDJN03_03074, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 227 bits (579), Expect = 4.70e-73
Identity = 122/176 (69.32%), Postives = 136/176 (77.27%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPL 60
MELEA RDLEC AENQQQRVRYY+S A YT L Y+ LRFFY AVS SS+LHCVHWP+
Sbjct: 1 MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
Query: 61 VSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAG 120
V L+LS S LYF ILLP FIKL+RTHNLL IC H + QRIL + +Q G EAG
Sbjct: 61 VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDG-----EAG 120
Query: 121 ASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFELCASKYVLCN 176
AS DGVEFN RFHQVRALHNDSF+GGEIKVY CA+A AL +VTAF+L A KYV+CN
Sbjct: 121 ASTDGVEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN 171
BLAST of Cp4.1LG05g06380 vs. NCBI nr
Match:
XP_022957795.1 (uncharacterized protein LOC111459230 isoform X1 [Cucurbita moschata])
HSP 1 Score: 226 bits (575), Expect = 1.91e-72
Identity = 124/176 (70.45%), Postives = 134/176 (76.14%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPL 60
MELE RDLE AE QQQRVRYY+S AIYT L Y+ LRFFY AVS SSTLHCVHWP+
Sbjct: 1 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 60
Query: 61 VSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAG 120
V L+LSCS LY ILLP FIKL+RTHNLL IC +H + QRIL A +Q G EAG
Sbjct: 61 VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EAG 120
Query: 121 ASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFELCASKYVLCN 176
AS GVEFN RFHQVRALHNDSF+GGEIKVY CAIA ALL+VTAFEL A KYVLC
Sbjct: 121 ASTHGVEFNVRFHQVRALHNDSFSGGEIKVYTCAIAFALLAVTAFELGACKYVLCK 171
BLAST of Cp4.1LG05g06380 vs. NCBI nr
Match:
KAG6605756.1 (hypothetical protein SDJN03_03073, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 224 bits (572), Expect = 8.50e-70
Identity = 122/176 (69.32%), Postives = 133/176 (75.57%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPL 60
MELE RDLE AE QQQRVRYY+S AIYT L Y+ LRFFY AVS SSTLHCVHWP+
Sbjct: 161 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 220
Query: 61 VSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAG 120
V L+LSCS LY ILLP FIKL+RTHNLL IC +H + QRIL A +Q G EAG
Sbjct: 221 VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EAG 280
Query: 121 ASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFELCASKYVLCN 176
AS GVEFN RFHQVRALHNDSF+GGEIKVY CA+A AL +VTAFEL A KYVLC
Sbjct: 281 ASTHGVEFNFRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFELYAGKYVLCK 331
BLAST of Cp4.1LG05g06380 vs. NCBI nr
Match:
XP_022957796.1 (uncharacterized protein LOC111459230 isoform X2 [Cucurbita moschata])
HSP 1 Score: 198 bits (504), Expect = 9.53e-62
Identity = 111/173 (64.16%), Postives = 123/173 (71.10%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPL 60
MELE RDLE AE QQQRVRYY+S AIYT L Y+ LRFFY AVS SSTLHCVHWP+
Sbjct: 1 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 60
Query: 61 VSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAG 120
V L+LSCS LY ILLP FIKL+RTHNLL IC +H + QRIL A +Q G EAG
Sbjct: 61 VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EAG 120
Query: 121 ASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFELCASKYV 173
AS GVEFN RFHQVRALHNDSF+GGEIKVY C++ S LC +K V
Sbjct: 121 ASTHGVEFNVRFHQVRALHNDSFSGGEIKVYTCSVCCYRFS----TLCLTKEV 164
BLAST of Cp4.1LG05g06380 vs. ExPASy TrEMBL
Match:
A0A6J1H1I5 (uncharacterized protein LOC111459230 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)
HSP 1 Score: 226 bits (575), Expect = 9.24e-73
Identity = 124/176 (70.45%), Postives = 134/176 (76.14%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPL 60
MELE RDLE AE QQQRVRYY+S AIYT L Y+ LRFFY AVS SSTLHCVHWP+
Sbjct: 1 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 60
Query: 61 VSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAG 120
V L+LSCS LY ILLP FIKL+RTHNLL IC +H + QRIL A +Q G EAG
Sbjct: 61 VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EAG 120
Query: 121 ASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFELCASKYVLCN 176
AS GVEFN RFHQVRALHNDSF+GGEIKVY CAIA ALL+VTAFEL A KYVLC
Sbjct: 121 ASTHGVEFNVRFHQVRALHNDSFSGGEIKVYTCAIAFALLAVTAFELGACKYVLCK 171
BLAST of Cp4.1LG05g06380 vs. ExPASy TrEMBL
Match:
A0A6J1H082 (uncharacterized protein LOC111459230 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)
HSP 1 Score: 198 bits (504), Expect = 4.62e-62
Identity = 111/173 (64.16%), Postives = 123/173 (71.10%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPL 60
MELE RDLE AE QQQRVRYY+S AIYT L Y+ LRFFY AVS SSTLHCVHWP+
Sbjct: 1 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 60
Query: 61 VSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAG 120
V L+LSCS LY ILLP FIKL+RTHNLL IC +H + QRIL A +Q G EAG
Sbjct: 61 VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDG-----EAG 120
Query: 121 ASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFELCASKYV 173
AS GVEFN RFHQVRALHNDSF+GGEIKVY C++ S LC +K V
Sbjct: 121 ASTHGVEFNVRFHQVRALHNDSFSGGEIKVYTCSVCCYRFS----TLCLTKEV 164
BLAST of Cp4.1LG05g06380 vs. ExPASy TrEMBL
Match:
A0A6J1H1A1 (uncharacterized protein LOC111459231 OS=Cucurbita moschata OX=3662 GN=LOC111459231 PE=4 SV=1)
HSP 1 Score: 189 bits (480), Expect = 1.98e-58
Identity = 109/167 (65.27%), Postives = 123/167 (73.65%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPL 60
MEL+ RD E AEN+QQ+VRYY S YT +AY+ LRFFY A+S ASSTLHCVHWP+
Sbjct: 1 MELQWLKRDFETLAENKQQKVRYYDSRVNYTTMAYLAWLRFFYFALSSASSTLHCVHWPM 60
Query: 61 VSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAG 120
V L+LS SFLYF ILL FIKL+RTHNLLD ICKEH I QRIL A +Q EAG
Sbjct: 61 VLGLSLSSSFLYFLILLQPFIKLYRTHNLLDTICKEHTLICQRILEAMNQ-----DAEAG 120
Query: 121 ASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFEL 167
AS DGV F+ QVRAL +DSF GGE+KVY CAIA ALL+VTAFEL
Sbjct: 121 ASNDGVRFDFGL-QVRALSDDSFCGGEMKVYGCAIAFALLAVTAFEL 161
BLAST of Cp4.1LG05g06380 vs. ExPASy TrEMBL
Match:
A0A6J1H053 (uncharacterized protein LOC111459230 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)
HSP 1 Score: 172 bits (435), Expect = 1.19e-51
Identity = 103/167 (61.68%), Postives = 119/167 (71.26%), Query Frame = 0
Query: 1 MELEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPL 60
M+L+ RD E AEN VRYY+S A T LAY++ LRFFY AVSPASSTLHC HWP+
Sbjct: 1 MKLQWVRRDFESLAEN----VRYYKSRATCTTLAYLSWLRFFYFAVSPASSTLHCFHWPM 60
Query: 61 VSALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAG 120
V L+LS SFLYF ILLP FIKL+R HNLL IC +H I QRI A +Q+G +AG
Sbjct: 61 VLDLSLSSSFLYFLILLPAFIKLYRIHNLLHTICNQHTHICQRIWEAMNQNG-----QAG 120
Query: 121 ASPDGVEFNSRFHQVRALHNDSFTGGEIKVYACAIAVALLSVTAFEL 167
A DGV F+ QVRAL +DSF+GGEIKVY CAIA AL +VTAFEL
Sbjct: 121 ALNDGVGFDFGV-QVRALTDDSFSGGEIKVYGCAIAFALFAVTAFEL 157
BLAST of Cp4.1LG05g06380 vs. ExPASy TrEMBL
Match:
A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)
HSP 1 Score: 120 bits (302), Expect = 2.39e-31
Identity = 72/166 (43.37%), Postives = 103/166 (62.05%), Query Frame = 0
Query: 3 LEAEMRDLECGAENQQQRVRYYQSIAIYTILAYITSLRFFYSAVSPASSTLHCVHWPLVS 62
L+ + +L+ AE Q+ +R+Y+S A + Y+ RFF+ A+S SS L C+ W +V
Sbjct: 6 LKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSPLKCIDWRVVL 65
Query: 63 ALTLSCSFLYFFILLPVFIKLHRTHNLLDVICKEHADIYQRILNARSQHGGASSIEAGAS 122
L+L CSF+YF + L L+RT N +D+ICKE +DI Q+IL+A +Q G S++EAG
Sbjct: 66 GLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQDDGGSAMEAGDL 125
Query: 123 PDGVEFNSRFHQVRALHND-SFTGGEIKVYACAIAVALLSVTAFEL 167
DGV FN FH L+ D SF + KVY AI +L++VTA EL
Sbjct: 126 SDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALEL 171
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6605754.1 | 1.78e-113 | 96.05 | hypothetical protein SDJN03_03071, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6605757.1 | 4.70e-73 | 69.32 | hypothetical protein SDJN03_03074, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022957795.1 | 1.91e-72 | 70.45 | uncharacterized protein LOC111459230 isoform X1 [Cucurbita moschata] | [more] |
KAG6605756.1 | 8.50e-70 | 69.32 | hypothetical protein SDJN03_03073, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022957796.1 | 9.53e-62 | 64.16 | uncharacterized protein LOC111459230 isoform X2 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1H1I5 | 9.24e-73 | 70.45 | uncharacterized protein LOC111459230 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1H082 | 4.62e-62 | 64.16 | uncharacterized protein LOC111459230 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1H1A1 | 1.98e-58 | 65.27 | uncharacterized protein LOC111459231 OS=Cucurbita moschata OX=3662 GN=LOC1114592... | [more] |
A0A6J1H053 | 1.19e-51 | 61.68 | uncharacterized protein LOC111459230 isoform X3 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1DTV6 | 2.39e-31 | 43.37 | uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
Match Name | E-value | Identity | Description | |