Cp4.1LG05g06170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g06170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Polypyrimidine tract-binding protein-like protein 2
Location	Cp4.1LG05: 3732313 .. 3735807 (-)
RNA-Seq Expression	Cp4.1LG05g06170
Synteny	Cp4.1LG05g06170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGTCAACAACCCCTCTGTTTCTCTCTCTAAACCCCTTCGTAGATTCCGGGCTTCATTTCCCCCTGCACCACAAACAGATCAAGTCCAGGAGAACACACAAAATCTGAACCAGAGGCCATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGGGCGTATGGCCCTCGGGCGGCCCGGAGCCGGGCCGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCTTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTTGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGTGCGGATTAATAATTTGATTCCCGTTGATTCATTCTGTAATATGTCATACTCTGATCAAGATTTCGAAGTGATTTCGAAGTGTGAAGACTATCCTTACAAACCATTATACAACACGACCATGTTAGGTGCGAAGATTGTCCTCGCAAATTAACATGATTCTTTTAACCTATTTTGATGTTTTTTTAGGTAAATGTATGCTATGATTGAGCTACCGAAAAGAGAAGTTGTTCTTTGTTGATATAAGTGGTAACTTTCCGTTCTTTTAAGTACTTCTTAACGTTACGTAGTCAAGATCCTCAAAATTACTCTAGTTCGGATGTAGTCTACCCCTTCTTTACTCGGGGTTACACATTCAGTTTCTACTTTCCAGGTAAAAAATATTCTTCGTCTGAAATTGGACTTGTTCTTTCATGCCAGAATGACACAGCTCTTGTCAACTTGAGCTGATTATGGCATTTCTAATGTTCAAAGTCCCCCACAGCCACGCGCGTTTCTCACAGGCATTCTCTTTCATGAGAAATTATTTGAGTTAATTTAGAACACGCATTGATTGCTTTTTCGATAGTGATATACAGAAAAAGCAAGTAAATTAGATGTAAATTGGCCTCAAACTAATGGTGTGACTGTTTTAAAGATTTACTAGAAGTACAAGGACTAGGATGGAACAAGTCCCAAAATTGAGGACCAAAATGGTGTTCTAACCAAATTGGAATTTAACTACAGGCATAACCTCACTTCAAATTTGCTATTTTAGATCGATCATTTGGTTCTTTGGTTTGGTTTGATGAAATTTGCTGTGTTAGTTCACTCTTTGATCTCTTCCCTTGGTCTTTTAGAATTAGTACAAGAAAACGACAAAAATCTAACTCTATGTGTAGCAGGCCAAGTCTACCGCTAGCAGATATTGTCTCTTTAGGCTTCCCCTTCCGGGTTTCCCCTCAGGGTTTTAAAGCGCGTATACTAGGGAGAGGTTAAAGAATGTTTCGTTCCCCTCTCCATCCAATGCGGGATCTCACATTTTGACTATCTCTAGAACCGTGGTTCTGTTGAACCACATTAACTGCATTCTCTACCTATGGCACGGAAAATCAAGCAACCTTTTAAAATCACTCACTTCTTTGAAGAGTCTCAAGTTTCAGGGTCAATGGAGCCAAAGCCATTTTCCTACCATTGTTAGAAAACTTGGATTTCTAGCAAAATGAGTGAAAGAGTGTGTAGTGTGAGGCTTTTTAGTTAACATTTCTATTTCTTTCTTGTTTCTTGTTTTTTCTTATTGAATTTTGAAAATACACGAAACATGAAACGGTTGCTGTCAGAATGGAAGATTAGATATTTCTTTTGACAATGGTTACCCCAGTTTCATTTTTCAATTAAAAAACTGGTCAGCGATTTTTAGTTACTCCTGTAGAACAGTATTGTTATACCACTTGGGATGAAATTTTCAATTACCTTCTTTTTCCCTGATTTTAGAGTTGGAGTCGGGTGCTTTTACTACTAAGAATCTTTGGTGGTATACTTCTCGAGTCATCCTTTTGCCTTCTAAGTACTTGACAATGCTTTGGGATTCACCTTCCTTTGTTACTCCTACTGGAGGTCTCACTTCTGATACAAGGGACACATAAATATGAAACTCCATGTCCAAGACAAGAAGCTATGCCAAAATCATGAAAATGCTCACCATAGTTTATGATTTGCATTGTAGGACAACTATGTGATCAATTCCTTCTATTCATAATGTTAACTTTTGCAGCATTAGTGTTTGTTTTCTGTTTTTTCCCCCCTCCTTTTGCACTTTATAAGAGCTGTCATTCAATCCACTTCTGCAGGAACAAAAAGGATATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGAGCCGACGGTCATGTTCAAATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATAGGAAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCGAGCTTCTGGTATGTGCATGAATATTTATATTGTACTGTCGAATAGCGAACGATTGAGATGATGTTTATTGTGTTATTTATAGCATATAATGTATAGAAGTATTACTATGTTATATTGCAGATTGTCCATCTTCAAGTAAAAGTGTATTGATCTAGTTTTGTTTGTTTTGAATTATAAGTTTATACCTTCTGCATAATCATATACTTCTATTACTTTCTAGTTTCTTAACTTTCTTATCGTGCGAAGATCGTATCGAAGAGGAGTTTGCTGGTATATAATGTCTATAATTCACTTAATCACCTAATGTTCTGTTTTCGTGATTATGAGTAGTACTTCAATATTTGTTCAAGGGATAAAATTCTGACTTGGAGTCTCTGCATTTTTATAACGAAGTGGTTGTACAATGAATGGCATCCAAATGAAGTGATGTGAATGTCAATGCAGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCCGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGAACTTGTGATCTAATTCTCTCTTCCACTTCCATAGCTGATCCCTGCAACTGGACTTCAGGCCTGCAAAGTAACCTTTTGTTACATAATCCTGTGCATGTTTATTGTAGTACATAGAGTGAAAAACATTGTTGATACATCTGATTTCTGATTTAGTATAGTTGTTTCCATTTGGACATTCAAATTTTGTTTTGACTTGCCCTTTTCTATTCCCATTCAAATTT

mRNA sequence

CACGTCAACAACCCCTCTGTTTCTCTCTCTAAACCCCTTCGTAGATTCCGGGCTTCATTTCCCCCTGCACCACAAACAGATCAAGTCCAGGAGAACACACAAAATCTGAACCAGAGGCCATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGGGCGTATGGCCCTCGGGCGGCCCGGAGCCGGGCCGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCTTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTTGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGAACAAAAAGGATATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGAGCCGACGGTCATGTTCAAATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATAGGAAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCGAGCTTCTGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCCGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGAACTTGTGATCTAATTCTCTCTTCCACTTCCATAGCTGATCCCTGCAACTGGACTTCAGGCCTGCAAAGTAACCTTTTGTTACATAATCCTGTGCATGTTTATTGTAGTACATAGAGTGAAAAACATTGTTGATACATCTGATTTCTGATTTAGTATAGTTGTTTCCATTTGGACATTCAAATTTTGTTTTGACTTGCCCTTTTCTATTCCCATTCAAATTT

Coding sequence (CDS)

ATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGGGCGTATGGCCCTCGGGCGGCCCGGAGCCGGGCCGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCTTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTTGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGAACAAAAAGGATATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGAGCCGACGGTCATGTTCAAATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATAGGAAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCGAGCTTCTGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCCGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGA

Protein sequence

MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAAALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQEQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSLLFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS

Homology

[Close]

BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: KAG7035737.1 (hypothetical protein SDJN02_02535, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 561 bits (1447), Expect = 2.78e-201
Identity = 291/296 (98.31%), Postives = 294/296 (99.32%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARDF AYG RAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA
Sbjct: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ
Sbjct: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           EQKG+DYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLNGFEQAGLAHHGL+LLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 296

[Close]

BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: XP_022995388.1 (uncharacterized protein LOC111490949 [Cucurbita maxima])

HSP 1 Score: 557 bits (1436), Expect = 1.32e-199
Identity = 288/296 (97.30%), Postives = 292/296 (98.65%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA
Sbjct: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEF+VPFLQAIGSLLL LGTLFLLIQ
Sbjct: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFSVPFLQAIGSLLLSLGTLFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           EQKG+DYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLNGFEQAGLAH GL+LLGKNWVW GIFGSLSLLLGGL NVHKVFKMQQFDGLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHRGLKLLGKNWVWFGIFGSLSLLLGGLGNVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQA+PTPYKDVLVGQTS
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQASPTPYKDVLVGQTS 296

[Close]

BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: KAG6605771.1 (Polypyrimidine tract-binding protein-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 553 bits (1426), Expect = 1.02e-191
Identity = 287/294 (97.62%), Postives = 291/294 (98.98%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARDF AYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA
Sbjct: 1   MVKLASARDFSAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALILIVNV DLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ
Sbjct: 61  ALILIVNVQDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           EQKG+DYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLNGFEQAGLAHHGL+LLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQ 294
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVL+ Q
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLLFQ 294

[Close]

BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: TYK05966.1 (polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 504 bits (1297), Expect = 2.01e-178
Identity = 258/295 (87.46%), Postives = 273/295 (92.54%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KG+DY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGL+LLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 295
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVLVGQS 295

[Close]

BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: XP_038874807.1 (uncharacterized protein LOC120067318 [Benincasa hispida])

HSP 1 Score: 503 bits (1294), Expect = 5.75e-178
Identity = 259/296 (87.50%), Postives = 272/296 (91.89%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR  R+RAEYINAGLYLFAT+LLLGGFVAQLSRE  SGLALI+ A 
Sbjct: 1   MVKLVSARDFRVYGPRPVRNRAEYINAGLYLFATVLLLGGFVAQLSREPMSGLALILFAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALI IVN+HDLFAHLAGIDYRLPLL QYD QLLFVEF+VPFLQAIGSLLL LG LFLLIQ
Sbjct: 61  ALITIVNLHDLFAHLAGIDYRLPLLVQYDAQLLFVEFSVPFLQAIGSLLLSLGALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           EQKG+DYYKLEKH  +MLIAGPALW+LGSILNSCQIYERADGHVQILQQSVHIPFLIGSL
Sbjct: 121 EQKGHDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQA LAHHGL LLGKNWVWLGIFGSLSLLLGGL+NV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNRYEQAKLAHHGLRLLGKNWVWLGIFGSLSLLLGGLSNVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 296
           LEKLRGGANERLL EREGRIPLILEDQGRRKR  DEEKGR+A  TPYKDVLVGQ+S
Sbjct: 241 LEKLRGGANERLLEEREGRIPLILEDQGRRKRHVDEEKGREARSTPYKDVLVGQSS 296

[Close]

BLAST of Cp4.1LG05g06170 vs. ExPASy TrEMBL
Match: A0A6J1K7T0 (uncharacterized protein LOC111490949 OS=Cucurbita maxima OX=3661 GN=LOC111490949 PE=4 SV=1)

HSP 1 Score: 557 bits (1436), Expect = 6.40e-200
Identity = 288/296 (97.30%), Postives = 292/296 (98.65%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA
Sbjct: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEF+VPFLQAIGSLLL LGTLFLLIQ
Sbjct: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFSVPFLQAIGSLLLSLGTLFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           EQKG+DYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLNGFEQAGLAH GL+LLGKNWVW GIFGSLSLLLGGL NVHKVFKMQQFDGLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHRGLKLLGKNWVWFGIFGSLSLLLGGLGNVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQA+PTPYKDVLVGQTS
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQASPTPYKDVLVGQTS 296

[Close]

BLAST of Cp4.1LG05g06170 vs. ExPASy TrEMBL
Match: A0A5D3C6J8 (Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00600 PE=4 SV=1)

HSP 1 Score: 504 bits (1297), Expect = 9.72e-179
Identity = 258/295 (87.46%), Postives = 273/295 (92.54%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KG+DY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGL+LLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 295
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVLVGQS 295

[Close]

BLAST of Cp4.1LG05g06170 vs. ExPASy TrEMBL
Match: A0A0A0KJH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139580 PE=4 SV=1)

HSP 1 Score: 495 bits (1275), Expect = 2.26e-175
Identity = 254/296 (85.81%), Postives = 271/296 (91.55%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR+ R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +L  IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL    LFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KG+DY+KLEKH  +MLIAGPALW+LGSI NSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGL+LLGKNW+WLGIFGSLS LLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGR-QAAPTPYKDVLVGQT 295
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR +A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 296

[Close]

BLAST of Cp4.1LG05g06170 vs. ExPASy TrEMBL
Match: A0A1S3AUZ4 (LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 OS=Cucumis melo OX=3656 GN=LOC103482951 PE=4 SV=1)

HSP 1 Score: 502 bits (1292), Expect = 2.43e-171
Identity = 257/295 (87.12%), Postives = 273/295 (92.54%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGID+RLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDHRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KG+DY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGL+LLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 295
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVLVGQS 295

[Close]

BLAST of Cp4.1LG05g06170 vs. ExPASy TrEMBL
Match: A0A5A7TLW2 (Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00560 PE=4 SV=1)

HSP 1 Score: 498 bits (1281), Expect = 1.26e-169
Identity = 255/291 (87.63%), Postives = 269/291 (92.44%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KG+DY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGL+LLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVL 291
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVL
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVL 291

[Close]

BLAST of Cp4.1LG05g06170 vs. TAIR 10
Match: AT5G24130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 328.9 bits (842), Expect = 4.1e-90
Identity = 182/316 (57.59%), Postives = 221/316 (69.94%), Query Frame = 0


Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQ-LSREAKSGLALIVLA 60
           MVKLA+AR+ R YGPR  RSRAEYINAGLYLFAT++L+GGF A   S E +SGL LI+LA
Sbjct: 1   MVKLATAREIRTYGPRLGRSRAEYINAGLYLFATVVLIGGFTATGFSWEPRSGLVLILLA 60

Query: 61  AALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLI 120
             LI  VNVHDL AHLAGIDYRL L+ +YD+QL  VEFAVP +Q  GS++  LG  F+  
Sbjct: 61  LVLITAVNVHDLVAHLAGIDYRLRLM-EYDLQLGLVEFAVPLVQIAGSVVFFLGIFFVFH 120

Query: 121 QEQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGS 180
           Q +    Y   E H L++LIAGP LW++GSI NSCQIYERAD HVQILQQ V+IPFL+GS
Sbjct: 121 QAETKRGYSGREHHALNLLIAGPLLWLIGSIHNSCQIYERADSHVQILQQCVYIPFLVGS 180

Query: 181 LLFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGL 240
           LLF V+AVLN  + +G +  GL+LLG+ W+WLGI G++ L +GGL NV KVF   Q  GL
Sbjct: 181 LLFLVSAVLNSLDISGSSRSGLKLLGERWIWLGISGAICLFVGGLLNVVKVFNFVQISGL 240

Query: 241 RLEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQA----------------- 295
           RLEKLRGGA +RLL  REG +PL+ E++  RK  +D E   +A                 
Sbjct: 241 RLEKLRGGAQDRLLEGREGYLPLVAEEERIRKMEADHEASSRAKPRAHTTSKAGEGATET 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g06170 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g06170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035737.1	2.78e-201	98.31	hypothetical protein SDJN02_02535, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022995388.1	1.32e-199	97.30	uncharacterized protein LOC111490949 [Cucurbita maxima]	[more]
KAG6605771.1	1.02e-191	97.62	Polypyrimidine tract-binding protein-like 2, partial [Cucurbita argyrosperma sub...	[more]
TYK05966.1	2.01e-178	87.46	polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa]	[more]
XP_038874807.1	5.75e-178	87.50	uncharacterized protein LOC120067318 [Benincasa hispida]	[more]

BLAST of Cp4.1LG05g06170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7T0	6.40e-200	97.30	uncharacterized protein LOC111490949 OS=Cucurbita maxima OX=3661 GN=LOC111490949...	[more]
A0A5D3C6J8	9.72e-179	87.46	Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa ...	[more]
A0A0A0KJH6	2.26e-175	85.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139580 PE=4 SV=1	[more]
A0A1S3AUZ4	2.43e-171	87.12	LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 OS=Cucumis m...	[more]
A0A5A7TLW2	1.26e-169	87.63	Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa ...	[more]

BLAST of Cp4.1LG05g06170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24130.1	4.1e-90	57.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..296
None	No IPR available	PANTHER	PTHR34967	OS02G0257200 PROTEIN	coord: 1..295

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g06170.1	Cp4.1LG05g06170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding