Cp4.1LG05g04660 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g04660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG05: 2715772 .. 2716169 (+)
RNA-Seq Expression	Cp4.1LG05g04660
Synteny	Cp4.1LG05g04660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAGAACATGGAATTTCACAGTGCGAAGCAGTGCAAATCTCCTTTTGGACATGCACATCCAAATTCGACTATAGACGAGTTTGAATTCAAAGCTAGCAGCCGTTTCAATCTCAGATATATCGGTTTGATCAAGATGATCTAACAGAGAAGAAAAACAAGCAACGAACGCAAAGCGAAGATAAATTTGTACCTGCCACGGAAAGATCATTCCACTTCCTCATCGGCTCAAGATTCCGCCGCCTCGCATTGAAAATCGCAGCGGCAAAAGCTCCACCGGTCTCGGCGCTCAAAATCAAATTCGCTCACCAGAATCTGTGGAACGATGATTTCGATCCTTTCTTGGTAGTGTCTTACTTGAGTGTAAAGGAAGAGAGAGAAGAAACGCGGAAAACGTAA

mRNA sequence

CTGAAGAACATGGAATTTCACAGTGCGAAGCAGTGCAAATCTCCTTTTGGACATGCACATCCAAATTCGACTATAGACGAGTTTGAATTCAAAGCTAGCAGCCGTTTCAATCTCAGATATATCGATGATCTAACAGAGAAGAAAAACAAGCAACGAACGCAAAGCGAAGATAAATTTGTACCTGCCACGGAAAGATCATTCCACTTCCTCATCGGCTCAAGATTCCGCCGCCTCGCATTGAAAATCGCAGCGGCAAAAGCTCCACCGGTCTCGGCGCTCAAAATCAAATTCGCTCACCAGAATCTGTGGAACGATGATTTCGATCCTTTCTTGGTAGTGTCTTACTTGAGTGTAAAGGAAGAGAGAGAAGAAACGCGGAAAACGTAA

Coding sequence (CDS)

CTGAAGAACATGGAATTTCACAGTGCGAAGCAGTGCAAATCTCCTTTTGGACATGCACATCCAAATTCGACTATAGACGAGTTTGAATTCAAAGCTAGCAGCCGTTTCAATCTCAGATATATCGATGATCTAACAGAGAAGAAAAACAAGCAACGAACGCAAAGCGAAGATAAATTTGTACCTGCCACGGAAAGATCATTCCACTTCCTCATCGGCTCAAGATTCCGCCGCCTCGCATTGAAAATCGCAGCGGCAAAAGCTCCACCGGTCTCGGCGCTCAAAATCAAATTCGCTCACCAGAATCTGTGGAACGATGATTTCGATCCTTTCTTGGTAGTGTCTTACTTGAGTGTAAAGGAAGAGAGAGAAGAAACGCGGAAAACGTAA

Protein sequence

LKNMEFHSAKQCKSPFGHAHPNSTIDEFEFKASSRFNLRYIDDLTEKKNKQRTQSEDKFVPATERSFHFLIGSRFRRLALKIAAAKAPPVSALKIKFAHQNLWNDDFDPFLVVSYLSVKEEREETRKT

Homology

[Close]

BLAST of Cp4.1LG05g04660 vs. NCBI nr
Match: KGN48085.1 (hypothetical protein Csa_002764 [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 5.11e-25
Identity = 67/148 (45.27%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 1   LKNMEFHSA----KQCKSPFGHAHPNSTIDEFEFKASSRFNLRYID----DLTEKKNKQR 60
           +KN+EFHS     KQCKSP GH+ PNST+DEFEF  S RFNL  +D    D  E++NK+R
Sbjct: 5   IKNIEFHSVPSSPKQCKSPIGHSRPNSTLDEFEFGTSCRFNLNDVDFDLEDRKEQQNKKR 64

Query: 61  TQSEDKFVPATERSFHFLIGSRFRRLA--LKI-----------------AAAKAPPVSAL 120
            Q ED+ +P    +       +   L   LKI                  ++   PVSAL
Sbjct: 65  MQFEDESLPVMAFADELFSDGKVLPLPPRLKIPPSHERLNENRSGKSSTVSSPRSPVSAL 124

[Close]

BLAST of Cp4.1LG05g04660 vs. NCBI nr
Match: TYJ96101.1 (hypothetical protein E5676_scaffold182G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 7.47e-25
Identity = 67/148 (45.27%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 1   LKNMEFHSA----KQCKSPFGHAHPNSTIDEFEFKASSRFNLRYID----DLTEKKNKQR 60
           +KN+EFHSA    KQCKSP GH+ PNST+DEFEF  S RFNL  +D    D TE++NK+ 
Sbjct: 5   IKNIEFHSAPSSPKQCKSPIGHSRPNSTLDEFEFGTSCRFNLNDVDFDLEDRTEQQNKKI 64

Query: 61  TQSEDKFVPATERSFHFLIGSRFRRLA--LKI-----------------AAAKAPPVSAL 120
            Q ED+ +P    +       +   L   LKI                  ++   P+SAL
Sbjct: 65  MQIEDESLPVMAFADELFSDGKVLPLPPRLKIPPSHERLNENHSGKSSTVSSPRSPLSAL 124

[Close]

BLAST of Cp4.1LG05g04660 vs. NCBI nr
Match: KAG6570429.1 (hypothetical protein SDJN03_29344, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (260), Expect = 1.99e-24
Identity = 66/139 (47.48%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 1   LKNMEFHSA----KQCKSPFGHAHPNSTIDEFEFKASSRFNLRYID----DLTEKKNKQR 60
           +KNMEF SA    K+ KSPFGH+ PNSTIDEFEF+ SSRFNL  +D    D  E+++K+R
Sbjct: 3   MKNMEFCSAPSSPKRYKSPFGHSRPNSTIDEFEFETSSRFNLNDVDFDLEDRPEQQSKKR 62

Query: 61  TQSEDKFVPATERSFHFLIGSRFRRLA--LKI-----------------AAAKAPPVSAL 112
            Q ED  +PA   +       +   L   LKI                  ++   PV+AL
Sbjct: 63  VQIEDASLPAMAFADELFSDGKVLPLPPRLKIPPPHERLNDHRSGKSSTTSSPRSPVAAL 122

[Close]

BLAST of Cp4.1LG05g04660 vs. NCBI nr
Match: KAA0061759.1 (hypothetical protein E6C27_scaffold212G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 5.75e-24
Identity = 67/148 (45.27%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 1   LKNMEFHSA----KQCKSPFGHAHPNSTIDEFEFKASSRFNLRYID----DLTEKKNKQR 60
           +KN+EFHSA    KQ KSP GH+ PNST+DEFEF  S RFNL  +D    D TEK+NK+ 
Sbjct: 5   IKNIEFHSAPSSPKQSKSPIGHSRPNSTLDEFEFGTSCRFNLNDVDFDLEDRTEKQNKKI 64

Query: 61  TQSEDKFVPATERSFHFLIGSRFRRLA--LKI-----------------AAAKAPPVSAL 120
            Q ED+ +P    +       +   L   LKI                  ++   P+SAL
Sbjct: 65  MQIEDESLPVMAFADELFSDGKVLPLPPRLKIPPSHERLNENHSGKSSTVSSPRSPLSAL 124

[Close]

BLAST of Cp4.1LG05g04660 vs. NCBI nr
Match: KAG6789564.1 (hypothetical protein POTOM_005669 [Populus tomentosa])

HSP 1 Score: 55.1 bits (131), Expect = 8.12e-06
Identity = 42/126 (33.33%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 22  NSTIDEFEFKASSRFNL---------RYIDDLTEKKNKQRTQSEDKFVPATERSFHFLIG 81
           NS +D+FEF+ S RFN+         RY D + E++  Q  +S      A E    F  G
Sbjct: 35  NSNLDDFEFETSRRFNIGDIDSGGSMRYEDAMEEQQKHQHKESLPAMASADEL---FCDG 94

Query: 82  SRFRRLALKIAAAKAPP--------------VSALKIKFAHQNLWNDDFDPFLVVSYLSV 124
                   K+   K PP              ++ +KI F  +N+WNDDFDPF+V +  +V
Sbjct: 95  --------KVIPLKPPPCHNHSSTLTSPESQMAKIKISFPRRNVWNDDFDPFMV-ALKTV 148

[Close]

BLAST of Cp4.1LG05g04660 vs. ExPASy TrEMBL
Match: A0A0A0KEI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429640 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 2.47e-25
Identity = 67/148 (45.27%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 1   LKNMEFHSA----KQCKSPFGHAHPNSTIDEFEFKASSRFNLRYID----DLTEKKNKQR 60
           +KN+EFHS     KQCKSP GH+ PNST+DEFEF  S RFNL  +D    D  E++NK+R
Sbjct: 5   IKNIEFHSVPSSPKQCKSPIGHSRPNSTLDEFEFGTSCRFNLNDVDFDLEDRKEQQNKKR 64

Query: 61  TQSEDKFVPATERSFHFLIGSRFRRLA--LKI-----------------AAAKAPPVSAL 120
            Q ED+ +P    +       +   L   LKI                  ++   PVSAL
Sbjct: 65  MQFEDESLPVMAFADELFSDGKVLPLPPRLKIPPSHERLNENRSGKSSTVSSPRSPVSAL 124

[Close]

BLAST of Cp4.1LG05g04660 vs. ExPASy TrEMBL
Match: A0A5D3BBX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00630 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 3.62e-25
Identity = 67/148 (45.27%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 1   LKNMEFHSA----KQCKSPFGHAHPNSTIDEFEFKASSRFNLRYID----DLTEKKNKQR 60
           +KN+EFHSA    KQCKSP GH+ PNST+DEFEF  S RFNL  +D    D TE++NK+ 
Sbjct: 5   IKNIEFHSAPSSPKQCKSPIGHSRPNSTLDEFEFGTSCRFNLNDVDFDLEDRTEQQNKKI 64

Query: 61  TQSEDKFVPATERSFHFLIGSRFRRLA--LKI-----------------AAAKAPPVSAL 120
            Q ED+ +P    +       +   L   LKI                  ++   P+SAL
Sbjct: 65  MQIEDESLPVMAFADELFSDGKVLPLPPRLKIPPSHERLNENHSGKSSTVSSPRSPLSAL 124

[Close]

BLAST of Cp4.1LG05g04660 vs. ExPASy TrEMBL
Match: A0A5A7V7W2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001370 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 2.78e-24
Identity = 67/148 (45.27%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 1   LKNMEFHSA----KQCKSPFGHAHPNSTIDEFEFKASSRFNLRYID----DLTEKKNKQR 60
           +KN+EFHSA    KQ KSP GH+ PNST+DEFEF  S RFNL  +D    D TEK+NK+ 
Sbjct: 5   IKNIEFHSAPSSPKQSKSPIGHSRPNSTLDEFEFGTSCRFNLNDVDFDLEDRTEKQNKKI 64

Query: 61  TQSEDKFVPATERSFHFLIGSRFRRLA--LKI-----------------AAAKAPPVSAL 120
            Q ED+ +P    +       +   L   LKI                  ++   P+SAL
Sbjct: 65  MQIEDESLPVMAFADELFSDGKVLPLPPRLKIPPSHERLNENHSGKSSTVSSPRSPLSAL 124

[Close]

BLAST of Cp4.1LG05g04660 vs. ExPASy TrEMBL
Match: A0A2H5PEX5 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_130240 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.11e-06
Identity = 46/146 (31.51%), Postives = 72/146 (49.32%), Query Frame = 0


Query: 7   HSAKQCKSPFGHAHPNSTIDEFEFKASSRFNLRYI----DDLTE----KKNKQRTQSEDK 66
           H  +    P  +   NS+  +FEF+ S RFN+  I    DD TE    K+  Q+  ++ K
Sbjct: 49  HDDQPTTPPNAYEDANSSFSDFEFETSRRFNVSVIAADHDDTTEDGCWKEQVQQNNNQRK 108

Query: 67  -FVPA---TERSFHFLIGS----------RFRRLALKIAAAKAP--PVSALKIKFAHQNL 126
            ++PA    +  FH  I            R+       ++  +P  P + LK+ FA ++L
Sbjct: 109 EYLPAMAFADELFHNGIVMPTLKPPPARLRYSNDTASSSSLSSPRSPNARLKLPFARRSL 168

[Close]

BLAST of Cp4.1LG05g04660 vs. ExPASy TrEMBL
Match: V4TGR1 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017459mg PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.11e-06
Identity = 46/146 (31.51%), Postives = 72/146 (49.32%), Query Frame = 0


Query: 7   HSAKQCKSPFGHAHPNSTIDEFEFKASSRFNLRYI----DDLTE----KKNKQRTQSEDK 66
           H  +    P  +   NS+  +FEF+ S RFN+  I    DD TE    K+  Q+  ++ K
Sbjct: 49  HDDQPTTPPNAYEDANSSFSDFEFETSRRFNVSVIAADHDDTTEDGCWKEQVQQNNNQRK 108

Query: 67  -FVPA---TERSFHFLIGS----------RFRRLALKIAAAKAP--PVSALKIKFAHQNL 126
            ++PA    +  FH  I            R+       ++  +P  P + LK+ FA ++L
Sbjct: 109 EYLPAMAFADELFHNGIVMPTLKPPPARLRYSNDTASSSSLSSPRSPNARLKLPFARRSL 168

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04660 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g04660 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48085.1	5.11e-25	45.27	hypothetical protein Csa_002764 [Cucumis sativus]	[more]
TYJ96101.1	7.47e-25	45.27	hypothetical protein E5676_scaffold182G00630 [Cucumis melo var. makuwa]	[more]
KAG6570429.1	1.99e-24	47.48	hypothetical protein SDJN03_29344, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0061759.1	5.75e-24	45.27	hypothetical protein E6C27_scaffold212G001370 [Cucumis melo var. makuwa]	[more]
KAG6789564.1	8.12e-06	33.33	hypothetical protein POTOM_005669 [Populus tomentosa]	[more]

BLAST of Cp4.1LG05g04660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEI4	2.47e-25	45.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429640 PE=4 SV=1	[more]
A0A5D3BBX2	3.62e-25	45.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V7W2	2.78e-24	45.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2H5PEX5	4.11e-06	31.51	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_130240 PE=4 SV=1	[more]
V4TGR1	4.11e-06	31.51	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017459mg PE=4 ...	[more]

BLAST of Cp4.1LG05g04660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 119..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g04660.1	Cp4.1LG05g04660.1	mRNA