Cp4.1LG05g02190 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g02190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ras-related protein Rab-1A
Location	Cp4.1LG05: 1273626 .. 1277166 (+)
RNA-Seq Expression	Cp4.1LG05g02190
Synteny	Cp4.1LG05g02190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGACATTTTCGGGTATTTATAAAGCACGCGCCCGGCGCCCCCCCTCCCCTTCTCCCTTCATTTCTTCGATTTCTCCTTTCTCTCGTTCGTTTTCTCTCTCTCTCTCTCTCCCCTTTTCTCCGGCGACTGATCTTCCTCCGGTCAAGTTTTCGCCGGCAGGTCCTCTCATCAAATCGATCTCTTCAGATATAATTATAGCCGGTATCTGATTAGCCATGAATCCAGAATAGTAAGCTCTATTTTCTTTGTGTTCTTTTTTACCCTTGCGTTTCTCTGAGTTGAATTTATCATTTGGAAGCCTTTGTTTTTGTGTTGTTTTTGCTGAATTAGGTTAGATCTGGTTGATGAGGAAGATGGAACTTTTTAAAGAAACGTTTTGTGTTTTGTAGCTTAATTAATTGAGGTTTTTTAGATGGCGTTGCTCTTTGTTGTGATTTGGTTGAAATCGGGGTGATCGATTGGAGATCTCAATTTATTTACCGTTGTGAAAAAAAAAAGGACCCTGTTAATTTCGTGTTGCTTCTCGAAATGATTGGAGGTGTTTGAATGTGAATTTGGTTGTCGATATTGATGTTCAGCATGTAATATCAGCTTGAATTTCTGAAGGGCTACGTAACTCGTTGGGTTCTTATTTTATTTCGAGTATTTCTAAAATCTAATTGTTTGGTTTCTTCATAATCCTTGAGGAGTGTTATATATGCATTATTTTACGTAATCGACTTTTGATGTTTAGTATTAACTATTTAACAGTTGGGAATACTGTGAAAATTTTTACTCCTTCGTTCTTGCATCTGCAGTGACTATTTGTTTAAGCTTCTGCTTATCGGAGACTCGGGAGTTGGAAAATCATGTCTTCTACTGAGGTTTGCTGTAAGTTTTCAGGATTGATTCTCTCCCGATAATCTTCTTTCTTCCTCACTCTTTTTTCCTTTTGTTTTCTGTCGAGAATAGAAGATGCATCTCTAATTAATAGTATAAATTGTTTTGCCATACCAAATGAGCTAAGAACAGTTACTGTGACTAAAGTGCGTACTCATGCTCTTCAAACTGTCTGTTCTTTGTTGAATACCATCCAAAGTTTATCTTTGACTCAGATAAGGAGTCTCTTCCCAACAGTTAACACCTCATCGTTTTTAATGTTTTTTGCCCCTCCCTTTCTTATATATACAACAGAATTTGATTCCTTTCCTTTTAAGTTGGCCATAAATATGTTCATGCAGAATGATGTTTATTTAAGTCACTCTTAAAATACGATAAATAAGCTGTTCACAGTGATTAGTTATTGTTATATTTTATAGAAATTTCTCATTATGTGTAATAGAGATTCACATAAATTTTGCATTGGTTGAGAATTTTGAGTCCCTGTCAATTGACGTTTATTGAGGTTGTTATAAAGCACGCAGTTGTGGATATATCCACTTGTTCCTCATTTAATTCCTTCTTTCTTTGAAACAGGATGATTCGTATCTGGATAGCTACATTAGCACAATTGGAGTTGACTTTGTAAGCTTCCACCACTATTTGGTTTTCTTTACAGATGACTATTACATGAATATTTACAGTTCTAACGCTTCGATTAAATTTTTACTTGTAGAAAATCCGTACTGTGGAACAGGATGGAAAGACCATTAAACTTCAAATTGTAAGATTGAATCTTATAATTGTCCTTGCTTTAATCTAAGCTTTAGGATTGTTACTTGTCTAACCTTTTTTTTTTCCTTTTTCTCTTACTTTCTTTCTTCCTTTCTATTCTAGAACATGCTGTTTTTTTCTGTAGGAATGGATAAAATTTAACAGCTGACCTTCTCTTTCTCTATTTTAGAAGGGGAAAATGGGAGGGTTGTTCAATTTTATTGCAAGTGCACAAGTCATTCATATTTTCTTAATATTGCTTGTTGAAGAAGTTTTCAGTGGTTATTTTTGGCCTTTTCTCTGTTAATTGGTAATTTTGATTGTCGATTGTAGTGGGACACTGCCGGTCAAGAACGTTTTAGAACAATTACTAGCAGTTACTACCGTGGAGCTCATGGCATTATTGTAATTCCTACACTCTCTTCGTTGTTCACTTCTATTTCCTGATTTTGTCCATCTCCCTAAAGTAAAGCCTGCTTGAATGCAATGCTCTGCTATGTAGGTCGTGTATGATGTTACAGATCAGGATAGCTTCAATAATGTTAAGCAATGGTTGAATGAAATAGATCGATATGCAAGCGAAAATGTGAACAAGCTTCTGGTTGGTAATAAATGTGACCTCACTGCAAATAAGGTCGTCTCTTATGAGACAGCTAAGGTAGTAAATCAAGTTGGGTTTCTTTTGATAAATTATAATTTGGATGTTGAATATGAATGAGAAGATTAAAATTTGATAGTGATTCATAACCTTAACTTTTCTAAGGCTTTTGCGGATGAAATTGGGATTCCATTCATGGAGACAAGCGCTAAAAGCGCCACCAATGTGGAAGAGGCTTTTATGGCCATGGCTGCTGAAATAAAGAACAGGTATAAATACTAGGAACTTTTCTGATTACATAAACCTATTTTTATGGTAAAGGCTGCTCTAAACATCTGAATCTCTTATCATACCAAATCGCAGATGAGACAGNGAACTTTTCTGATTACATAAACCTATTTTTATGGTAAAGGCTGCTCCAAACATCTGAATCTCTTATCATACCAAATCGCAGATGAGACAGCCCACAAGCTTACTCTTTTTTCTATTATTATTATTATTATTATTATTATTATATTCATGAGTCTCAGTTACACAACTCANTTTTTTTTATTATTATTATTATATTCATGAGTCTCAGTTACACAACTCAAAATTATTAAATCTTGTTAGATAACCACCATGGTCAATGATCACTAGGCTATCATAGGCTGATAAGTTCCGAGTGTATGATCCGTAGTTGGGAGGAAACCAAGTTCGGACCTTGAGCCTAACCTACCTTCTAGTGCTATGGTCTTTCACTAGATATCACGGAGAGGTAGATAGGAAGTGGTGAACCGCCTCTTCCAACTTCTACCTCCATTCTATAATCTATACCCCTCCACCATCAGCAGCTCTATACCCTGACTTGACCTTGAGGTGGCTAGATTCCTTGTCTTTGCTGCCCTTTTTACATGATTTGAAAGTCTTGGGGTTCATTTGGTATAGGATGGCGACACAGCCAATGAACAATGCAAGGCCACCAACCGTGAATATTCGAGGACAACCTGTGAATCAGAAAGGTGGTTGCTGCTCTTCTTGAAGATGCGTGGTCCTTATTGAATGGTGACTGATGGTGATGTTTATGTGTATGGACGGTGACGTGTAAAACTAGTCGTCTCTCTCTCTCTCTCACTCTATGCTTTTGGTATGAAAAGATTTGTCGGTCAAGATTTGCCTTTTCTTTTCTTCTCTCGCCTTTTGTCGTCAGCACGTTAACACTTCCATTCTTTCAAATATATTTGTTTCTGGATCAACATTATTCAGCTGTAAAATTTAGATATCAATGAACAGTAGTGTTTGCTTCATTTCCTTCGCTATTATTATTCAT

mRNA sequence

CACGACATTTTCGGGTATTTATAAAGCACGCGCCCGGCGCCCCCCCTCCCCTTCTCCCTTCATTTCTTCGATTTCTCCTTTCTCTCGTTCGTTTTCTCTCTCTCTCTCTCTCCCCTTTTCTCCGGCGACTGATCTTCCTCCGGTCAAGTTTTCGCCGGCAGGTCCTCTCATCAAATCGATCTCTTCAGATATAATTATAGCCGGTATCTGATTAGCCATGAATCCAGAATATGACTATTTGTTTAAGCTTCTGCTTATCGGAGACTCGGGAGTTGGAAAATCATGTCTTCTACTGAGGTTTGCTGATGATTCGTATCTGGATAGCTACATTAGCACAATTGGAGTTGACTTTAAAATCCGTACTGTGGAACAGGATGGAAAGACCATTAAACTTCAAATTTGGGACACTGCCGGTCAAGAACGTTTTAGAACAATTACTAGCAGTTACTACCGTGGAGCTCATGGCATTATTGTCGTGTATGATGTTACAGATCAGGATAGCTTCAATAATGTTAAGCAATGGTTGAATGAAATAGATCGATATGCAAGCGAAAATGTGAACAAGCTTCTGGTTGGTAATAAATGTGACCTCACTGCAAATAAGGTCGTCTCTTATGAGACAGCTAAGGCTTTTGCGGATGAAATTGGGATTCCATTCATGGAGACAAGCGCTAAAAGCGCCACCAATGTGGAAGAGGCTTTTATGGCCATGGCTGCTGAAATAAAGAACAGGATGGCGACACAGCCAATGAACAATGCAAGGCCACCAACCGTGAATATTCGAGGACAACCTGTGAATCAGAAAGGTGGTTGCTGCTCTTCTTGAAGATGCGTGGTCCTTATTGAATGGTGACTGATGGTGATGTTTATGTGTATGGACGGTGACGTGTAAAACTAGTCGTCTCTCTCTCTCTCTCACTCTATGCTTTTGGTATGAAAAGATTTGTCGGTCAAGATTTGCCTTTTCTTTTCTTCTCTCGCCTTTTGTCGTCAGCACGTTAACACTTCCATTCTTTCAAATATATTTGTTTCTGGATCAACATTATTCAGCTGTAAAATTTAGATATCAATGAACAGTAGTGTTTGCTTCATTTCCTTCGCTATTATTATTCAT

Coding sequence (CDS)

ATGAATCCAGAATATGACTATTTGTTTAAGCTTCTGCTTATCGGAGACTCGGGAGTTGGAAAATCATGTCTTCTACTGAGGTTTGCTGATGATTCGTATCTGGATAGCTACATTAGCACAATTGGAGTTGACTTTAAAATCCGTACTGTGGAACAGGATGGAAAGACCATTAAACTTCAAATTTGGGACACTGCCGGTCAAGAACGTTTTAGAACAATTACTAGCAGTTACTACCGTGGAGCTCATGGCATTATTGTCGTGTATGATGTTACAGATCAGGATAGCTTCAATAATGTTAAGCAATGGTTGAATGAAATAGATCGATATGCAAGCGAAAATGTGAACAAGCTTCTGGTTGGTAATAAATGTGACCTCACTGCAAATAAGGTCGTCTCTTATGAGACAGCTAAGGCTTTTGCGGATGAAATTGGGATTCCATTCATGGAGACAAGCGCTAAAAGCGCCACCAATGTGGAAGAGGCTTTTATGGCCATGGCTGCTGAAATAAAGAACAGGATGGCGACACAGCCAATGAACAATGCAAGGCCACCAACCGTGAATATTCGAGGACAACCTGTGAATCAGAAAGGTGGTTGCTGCTCTTCTTGA

Protein sequence

MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKGGCCSS

Homology

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy Swiss-Prot
Match: Q9SEH3 (Ras-related protein RABD2c OS=Arabidopsis thaliana OX=3702 GN=RABD2C PE=1 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 5.8e-101
Identity = 181/202 (89.60%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIV YDVTD +SFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLT+ KVVS ETAKAFADE+GIPF+ETSAK+ATNVEEAFMAM A IK RMA+QP   
Sbjct: 121 NKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 203
           ++PPTV IRGQPVNQ+ GCCSS
Sbjct: 181 SKPPTVQIRGQPVNQQSGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy Swiss-Prot
Match: Q9FPJ4 (Ras-related protein RABD2b OS=Arabidopsis thaliana OX=3702 GN=RABD2B PE=1 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 6.4e-100
Identity = 181/202 (89.60%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIV YDVTD +SFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NK DLT+ KVVS ETAKAFADE+GIPF+ETSAK+ATNVEEAFMAM A IK RMA+QP   
Sbjct: 121 NKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 203
           A+PPTV IRGQPVNQ+ GCCSS
Sbjct: 181 AKPPTVQIRGQPVNQQSGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy Swiss-Prot
Match: Q05737 (GTP-binding protein YPTM2 OS=Zea mays OX=4577 GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 6.4e-100
Identity = 183/203 (90.15%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ+SFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQP-MN 180
           NK DLTANKVV+ ETAKAFADE+GIPFMETSAK+ATNV++AFMAMAA IK+RMA+QP   
Sbjct: 121 NKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAA 180

Query: 181 NARPPTVNIRGQPVNQKGGCCSS 203
           NARP TV IRGQPVNQK  CCSS
Sbjct: 181 NARPATVQIRGQPVNQKTSCCSS 203

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy Swiss-Prot
Match: P28188 (Ras-related protein RABD2a OS=Arabidopsis thaliana OX=3702 GN=RABD2A PE=1 SV=3)

HSP 1 Score: 360.9 bits (925), Expect = 9.3e-99
Identity = 177/203 (87.19%), Postives = 191/203 (94.09%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRF+DDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTD++SFNNVKQWL+EIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPM-N 180
           NK DLT N+ + YETAKAFADEIGIPFMETSAK ATNVE+AFMAM+A IK RMA+QP  N
Sbjct: 121 NKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGN 180

Query: 181 NARPPTVNIRGQPVNQKGGCCSS 203
           NARPPTV IRGQPV QK GCCS+
Sbjct: 181 NARPPTVQIRGQPVAQKNGCCST 203

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy Swiss-Prot
Match: P40392 (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC1 PE=2 SV=2)

HSP 1 Score: 356.7 bits (914), Expect = 1.8e-97
Identity = 177/202 (87.62%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+SFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDL  N+VVSYE  KA ADEIGIPF+ETSAK ATNVE+AFM MA EIKNRMA+QP  N
Sbjct: 121 NKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATN 180

Query: 181 A-RPPTVNIRGQPVNQKGGCCS 202
           A +P TV +RGQPV Q+  CCS
Sbjct: 181 ASKPATVQMRGQPVAQQSSCCS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. NCBI nr
Match: XP_022958560.1 (ras-related protein RABD2c-like [Cucurbita moschata] >XP_022995189.1 ras-related protein RABD2c [Cucurbita maxima] >XP_023521387.1 ras-related protein RABD2c [Cucurbita pepo subsp. pepo] >XP_023533221.1 ras-related protein RABD2c [Cucurbita pepo subsp. pepo] >KAG6606206.1 Ras-related protein RABD2c, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036151.1 Ras-related protein RABD2c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 409 bits (1050), Expect = 6.66e-144
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQKGGCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKGGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. NCBI nr
Match: XP_022159480.1 (ras-related protein RABD2c [Momordica charantia])

HSP 1 Score: 406 bits (1044), Expect = 5.47e-143
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQK GCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKAGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. NCBI nr
Match: XP_022931789.1 (ras-related protein RABD2c [Cucurbita moschata])

HSP 1 Score: 405 bits (1042), Expect = 1.10e-142
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQK GCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKTGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. NCBI nr
Match: XP_004148356.1 (ras-related protein RABD2c [Cucumis sativus] >XP_008465881.1 PREDICTED: ras-related protein RABD2c [Cucumis melo] >XP_038888953.1 ras-related protein RABD2c [Benincasa hispida] >KAA0038499.1 Ras-related protein RABD2c [Cucumis melo var. makuwa] >KGN60467.1 hypothetical protein Csa_000830 [Cucumis sativus] >TYK31093.1 Ras-related protein RABD2c [Cucumis melo var. makuwa])

HSP 1 Score: 405 bits (1040), Expect = 2.23e-142
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+SFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQK GCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKSGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. NCBI nr
Match: XP_023554189.1 (GTP-binding protein YPTM2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404 bits (1039), Expect = 3.17e-142
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE+AFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEDAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQK GCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKTGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy TrEMBL
Match: A0A6J1K501 (ras-related protein RABD2c OS=Cucurbita maxima OX=3661 GN=LOC111490809 PE=4 SV=1)

HSP 1 Score: 409 bits (1050), Expect = 3.22e-144
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQKGGCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKGGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy TrEMBL
Match: A0A6J1H3U9 (ras-related protein RABD2c-like OS=Cucurbita moschata OX=3662 GN=LOC111459758 PE=4 SV=1)

HSP 1 Score: 409 bits (1050), Expect = 3.22e-144
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQKGGCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKGGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy TrEMBL
Match: A0A6J1DYV6 (ras-related protein RABD2c OS=Momordica charantia OX=3673 GN=LOC111025883 PE=4 SV=1)

HSP 1 Score: 406 bits (1044), Expect = 2.65e-143
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQK GCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKAGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy TrEMBL
Match: A0A6J1EV78 (ras-related protein RABD2c OS=Cucurbita moschata OX=3662 GN=LOC111438063 PE=4 SV=1)

HSP 1 Score: 405 bits (1042), Expect = 5.35e-143
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQK GCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKTGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. ExPASy TrEMBL
Match: A0A5A7TAX6 (Ras-related protein RABD2c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003700 PE=4 SV=1)

HSP 1 Score: 405 bits (1040), Expect = 1.08e-142
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+SFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 202
           ARPPTVNIRGQPVNQK GCCSS
Sbjct: 181 ARPPTVNIRGQPVNQKSGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. TAIR 10
Match: AT4G17530.1 (RAB GTPase homolog 1C )

HSP 1 Score: 368.2 bits (944), Expect = 4.1e-102
Identity = 181/202 (89.60%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIV YDVTD +SFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NKCDLT+ KVVS ETAKAFADE+GIPF+ETSAK+ATNVEEAFMAM A IK RMA+QP   
Sbjct: 121 NKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 203
           ++PPTV IRGQPVNQ+ GCCSS
Sbjct: 181 SKPPTVQIRGQPVNQQSGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. TAIR 10
Match: AT5G47200.1 (RAB GTPase homolog 1A )

HSP 1 Score: 364.8 bits (935), Expect = 4.6e-101
Identity = 181/202 (89.60%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIV YDVTD +SFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NK DLT+ KVVS ETAKAFADE+GIPF+ETSAK+ATNVEEAFMAM A IK RMA+QP   
Sbjct: 121 NKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG 180

Query: 181 ARPPTVNIRGQPVNQKGGCCSS 203
           A+PPTV IRGQPVNQ+ GCCSS
Sbjct: 181 AKPPTVQIRGQPVNQQSGCCSS 202

[Close]

BLAST of Cp4.1LG05g02190 vs. TAIR 10
Match: AT1G02130.1 (RAS 5 )

HSP 1 Score: 360.9 bits (925), Expect = 6.6e-100
Identity = 177/203 (87.19%), Postives = 191/203 (94.09%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRF+DDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTD++SFNNVKQWL+EIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPM-N 180
           NK DLT N+ + YETAKAFADEIGIPFMETSAK ATNVE+AFMAM+A IK RMA+QP  N
Sbjct: 121 NKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGN 180

Query: 181 NARPPTVNIRGQPVNQKGGCCSS 203
           NARPPTV IRGQPV QK GCCS+
Sbjct: 181 NARPPTVQIRGQPVAQKNGCCST 203

[Close]

BLAST of Cp4.1LG05g02190 vs. TAIR 10
Match: AT3G11730.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-82
Identity = 149/203 (73.40%), Postives = 175/203 (86.21%), Query Frame = 0


Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y+DSYISTIGVDFKIRT+EQDGKTIKLQ
Sbjct: 1   MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYD T+ +SFNNVKQWL+EIDRYA+E+V KLL+G
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNN 180
           NK D+  +KVVS ET +A ADE+GIPF+ETSAK + NVE+AF+ +A EIK +M +Q   N
Sbjct: 121 NKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNAN 180

Query: 181 --ARPPTVNIRGQPVNQ-KGGCC 201
             + P TV ++GQP+ Q  GGCC
Sbjct: 181 KTSGPGTVQMKGQPIQQNNGGCC 203

[Close]

BLAST of Cp4.1LG05g02190 vs. TAIR 10
Match: AT5G59840.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 241.1 bits (614), Expect = 7.6e-64
Identity = 124/208 (59.62%), Postives = 154/208 (74.04%), Query Frame = 0


Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YDYL KLLLIGDSGVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DGK IKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVGNKC 123
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK 
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 124 DLTANK-VVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNNAR 183
           D+  +K  V     +A ADE GI F ETSAK+  NVEE F ++A +IK R+A    + A 
Sbjct: 131 DMDESKRAVPKSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTD-SRAE 190

Query: 184 PPTVNI--------RGQPVNQKGGCCSS 203
           P T+ I         GQ   QK  CC S
Sbjct: 191 PATIKISQTDQAAGAGQ-ATQKSACCGS 216

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g02190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEH3	5.8e-101	89.60	Ras-related protein RABD2c OS=Arabidopsis thaliana OX=3702 GN=RABD2C PE=1 SV=1	[more]
Q9FPJ4	6.4e-100	89.60	Ras-related protein RABD2b OS=Arabidopsis thaliana OX=3702 GN=RABD2B PE=1 SV=1	[more]
Q05737	6.4e-100	90.15	GTP-binding protein YPTM2 OS=Zea mays OX=4577 GN=YPTM2 PE=2 SV=1	[more]
P28188	9.3e-99	87.19	Ras-related protein RABD2a OS=Arabidopsis thaliana OX=3702 GN=RABD2A PE=1 SV=3	[more]
P40392	1.8e-97	87.62	Ras-related protein RIC1 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC1 PE=2 S...	[more]

BLAST of Cp4.1LG05g02190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958560.1	6.66e-144	100.00	ras-related protein RABD2c-like [Cucurbita moschata] >XP_022995189.1 ras-related...	[more]
XP_022159480.1	5.47e-143	99.50	ras-related protein RABD2c [Momordica charantia]	[more]
XP_022931789.1	1.10e-142	99.50	ras-related protein RABD2c [Cucurbita moschata]	[more]
XP_004148356.1	2.23e-142	99.01	ras-related protein RABD2c [Cucumis sativus] >XP_008465881.1 PREDICTED: ras-rela...	[more]
XP_023554189.1	3.17e-142	99.01	GTP-binding protein YPTM2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG05g02190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K501	3.22e-144	100.00	ras-related protein RABD2c OS=Cucurbita maxima OX=3661 GN=LOC111490809 PE=4 SV=1	[more]
A0A6J1H3U9	3.22e-144	100.00	ras-related protein RABD2c-like OS=Cucurbita moschata OX=3662 GN=LOC111459758 PE...	[more]
A0A6J1DYV6	2.65e-143	99.50	ras-related protein RABD2c OS=Momordica charantia OX=3673 GN=LOC111025883 PE=4 S...	[more]
A0A6J1EV78	5.35e-143	99.50	ras-related protein RABD2c OS=Cucurbita moschata OX=3662 GN=LOC111438063 PE=4 SV...	[more]
A0A5A7TAX6	1.08e-142	99.01	Ras-related protein RABD2c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Cp4.1LG05g02190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17530.1	4.1e-102	89.60	RAB GTPase homolog 1C	[more]
AT5G47200.1	4.6e-101	89.60	RAB GTPase homolog 1A	[more]
AT1G02130.1	6.6e-100	87.19	RAS 5	[more]
AT3G11730.1	2.1e-82	73.40	Ras-related small GTP-binding family protein	[more]
AT5G59840.1	7.6e-64	59.62	Ras-related small GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 147..169 score: 46.71 coord: 9..30 score: 56.84 coord: 112..125 score: 56.24 coord: 50..72 score: 58.74 coord: 32..48 score: 34.84
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..173 e-value: 0.0021 score: 3.6
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 14..199 e-value: 6.5E-6 score: 34.5
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 6..172 e-value: 5.0E-37 score: 139.0
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 9..172 e-value: 4.0E-109 score: 378.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..202
None	No IPR available	PANTHER	PTHR47977	LD21953P-RELATED	coord: 6..201
None	No IPR available	PANTHER	PTHR47977:SF6	RAS-RELATED PROTEIN RABD2A-LIKE	coord: 6..201
None	No IPR available	PROSITE	PS51419	RAB	coord: 4..202 score: 39.323109
None	No IPR available	PROSITE	PS51420	RHO	coord: 2..174 score: 11.397491
None	No IPR available	CDD	cd01869	Rab1_Ypt1	coord: 7..172 e-value: 3.59661E-131 score: 363.572
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 11..171 e-value: 4.2E-16 score: 69.5
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 10..170 e-value: 3.6E-67 score: 225.0
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..202 score: 20.760162
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..196 e-value: 1.1E-77 score: 262.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..180
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 7..164 e-value: 1.2E-34 score: 117.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g02190.1	Cp4.1LG05g02190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding