Cp4.1LG05g02100 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g02100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Prolamin_like domain-containing protein
Location	Cp4.1LG05: 1071114 .. 1071479 (+)
RNA-Seq Expression	Cp4.1LG05g02100
Synteny	Cp4.1LG05g02100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAATCGGTTCGGTTTGTCGGCTTCCTCTTAGCTCTAGCGATTTCATCGTCGATTCCATCAGCATTCTCTCTCAGAAACATTCCGGAGTCGCTTTATTCAGCCGATTGGTCAGCGGCGACCTGTTGGGACGCGATAACCGCGGTGGAAGGATGCCAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTCGCGATTGTTGCAGAGCGATATTACATGGACTGCCGGACAAATGCGCCGCCGAGGTTTTCTCGTCTGGCGGAGAATTTGTGGCGGAAATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATAACTCCGCCGGTGATTGAGACTGATGAATAA

mRNA sequence

ATGTTGAAATCGGTTCGGTTTGTCGGCTTCCTCTTAGCTCTAGCGATTTCATCGTCGATTCCATCAGCATTCTCTCTCAGAAACATTCCGGAGTCGCTTTATTCAGCCGATTGGTCAGCGGCGACCTGTTGGGACGCGATAACCGCGGTGGAAGGATGCCAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTCGCGATTGTTGCAGAGCGATATTACATGGACTGCCGGACAAATGCGCCGCCGAGGTTTTCTCGTCTGGCGGAGAATTTGTGGCGGAAATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATAACTCCGCCGGTGATTGAGACTGATGAATAA

Coding sequence (CDS)

ATGTTGAAATCGGTTCGGTTTGTCGGCTTCCTCTTAGCTCTAGCGATTTCATCGTCGATTCCATCAGCATTCTCTCTCAGAAACATTCCGGAGTCGCTTTATTCAGCCGATTGGTCAGCGGCGACCTGTTGGGACGCGATAACCGCGGTGGAAGGATGCCAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTCGCGATTGTTGCAGAGCGATATTACATGGACTGCCGGACAAATGCGCCGCCGAGGTTTTCTCGTCTGGCGGAGAATTTGTGGCGGAAATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATAACTCCGCCGGTGATTGAGACTGATGAATAA

Protein sequence

MLKSVRFVGFLLALAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIETDE

Homology

[Close]

BLAST of Cp4.1LG05g02100 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227 bits (579), Expect = 1.06e-74
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MLKSVRFVGFLLALAISSSIPS--AFSLRNIPESLYSADWSAATCWDAITAVEGCQDEID 60
           MLKSVRFVGFLLALAISSSI S  AF+LRNIPE+L SADWSAATCWDAITAVEGCQDEID
Sbjct: 1   MLKSVRFVGFLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEID 60

Query: 61  MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIE 120
           MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEF AEISGAVNEYCDGMGITPPV+E
Sbjct: 61  MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLE 120

[Close]

BLAST of Cp4.1LG05g02100 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 8.16e-54
Identity = 88/122 (72.13%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 1   MLKSVRFVGFLL-ALAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDM 60
           M KS RF GF L ALAISSS  SAF++R I E++YSAD     CWDAI AVEGCQ++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIET 120
           AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEF  E+SGAVNEYCDGMGITPPV+ET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 117

[Close]

BLAST of Cp4.1LG05g02100 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170 bits (431), Expect = 3.30e-52
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MLKSVRFVGF-LLALAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDM 60
           M KSVRF GF LLAL ISS I SAF+LR  P+++ SADWS A C DA+ AVEGCQ EIDM
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVI 117
           A+ SNEIEVS +CCR ILHGLP+KCAA VFSSGGE  +EISGAV EYCDGMGITPPV+
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

[Close]

BLAST of Cp4.1LG05g02100 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.71e-23
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 67  EVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIETDE 121
           +VS DCC+ ILHG+P+KCAA VFSSGGEF  ++SGAVNEYCDGMGITPPV+ET++
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETED 60

[Close]

BLAST of Cp4.1LG05g02100 vs. NCBI nr
Match: THG19801.1 (hypothetical protein TEA_018555 [Camellia sinensis var. sinensis])

HSP 1 Score: 52.8 bits (125), Expect = 6.90e-06
Identity = 32/108 (29.63%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 7   FVGFLLALAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDMAMKSNEI 66
           F    +ALA ++SIP+    RN    +    +    CW  ++ VEGC +++  ++   +I
Sbjct: 3   FTVMAMALAATTSIPTTAMARNTKRLVEGPHFE---CWRYVSRVEGCSEDLRRSLNERQI 62

Query: 67  EVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITP 114
            +   CC+AI  GL   C  EVF  G  +      AV +YC  +   P
Sbjct: 63  RLGLHCCKAI-KGLGSACFGEVFRYG-PYSLLYGNAVKDYCSWIESPP 105

[Close]

BLAST of Cp4.1LG05g02100 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 5.14e-75
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MLKSVRFVGFLLALAISSSIPS--AFSLRNIPESLYSADWSAATCWDAITAVEGCQDEID 60
           MLKSVRFVGFLLALAISSSI S  AF+LRNIPE+L SADWSAATCWDAITAVEGCQDEID
Sbjct: 1   MLKSVRFVGFLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEID 60

Query: 61  MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIE 120
           MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEF AEISGAVNEYCDGMGITPPV+E
Sbjct: 61  MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLE 120

[Close]

BLAST of Cp4.1LG05g02100 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 3.95e-54
Identity = 88/122 (72.13%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 1   MLKSVRFVGFLL-ALAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDM 60
           M KS RF GF L ALAISSS  SAF++R I E++YSAD     CWDAI AVEGCQ++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIET 120
           AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEF  E+SGAVNEYCDGMGITPPV+ET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 117

[Close]

BLAST of Cp4.1LG05g02100 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 2.66e-52
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MLKSVRFVGFLLA-LAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDM 60
           M KSVRF GF L  LA SSS  SAF++R I E++YS+D     CWDAI AV+GCQ+EID 
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60

Query: 61  AMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIET 120
           AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEF  ++SGAVNEYCDGMGITPPV+ET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLET 117

[Close]

BLAST of Cp4.1LG05g02100 vs. ExPASy TrEMBL
Match: A0A2N9I0G4 (Prolamin_like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45386 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.80e-06
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 0


Query: 6   RFVGFLLALAISSSIP--SAFSL-RNIPESLYSADWSAATCWDAITAVEGCQDEIDMAMK 65
           +F+   LA A+ +S P  S  SL R  P  ++     +  CW  IT V+GCQ EI  A  
Sbjct: 7   KFILLTLAFAVMASTPALSYHSLHRGRPLIVFP---ESDRCWKYITRVQGCQHEIFAAFG 66

Query: 66  SN--EIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITP 114
            +  +  +S  CC+AI  GLP  C   +F  G  F+   S  V+ YC   G TP
Sbjct: 67  KDKGQFNISAKCCQAI-QGLPRGCGIWIFG-GRAFLPSFSYNVHNYCAAEGFTP 115

[Close]

BLAST of Cp4.1LG05g02100 vs. ExPASy TrEMBL
Match: A0A4S4ESH1 (Prolamin_like domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_018555 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.34e-06
Identity = 32/108 (29.63%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 7   FVGFLLALAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDMAMKSNEI 66
           F    +ALA ++SIP+    RN    +    +    CW  ++ VEGC +++  ++   +I
Sbjct: 3   FTVMAMALAATTSIPTTAMARNTKRLVEGPHFE---CWRYVSRVEGCSEDLRRSLNERQI 62

Query: 67  EVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITP 114
            +   CC+AI  GL   C  EVF  G  +      AV +YC  +   P
Sbjct: 63  RLGLHCCKAI-KGLGSACFGEVFRYG-PYSLLYGNAVKDYCSWIESPP 105

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g02100 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g02100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931003.1	1.06e-74	93.50	uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet...	[more]
KAA0038539.1	8.16e-54	72.13	hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136...	[more]
KAG6571831.1	3.30e-52	73.73	hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652857.1	1.71e-23	74.55	hypothetical protein Csa_023774, partial [Cucumis sativus]	[more]
THG19801.1	6.90e-06	29.63	hypothetical protein TEA_018555 [Camellia sinensis var. sinensis]	[more]

BLAST of Cp4.1LG05g02100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EX44	5.14e-75	93.50	uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A5A7TB28	3.95e-54	72.13	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LEG0	2.66e-52	69.67	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040...	[more]
A0A2N9I0G4	1.80e-06	35.96	Prolamin_like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS...	[more]
A0A4S4ESH1	3.34e-06	29.63	Prolamin_like domain-containing protein OS=Camellia sinensis var. sinensis OX=54...	[more]

BLAST of Cp4.1LG05g02100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 42..108 e-value: 1.7E-10 score: 40.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g02100.1	Cp4.1LG05g02100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity