Cp4.1LG05g01020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g01020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Syntaxin-related protein KNOLLE
Location	Cp4.1LG05: 418371 .. 418682 (+)
RNA-Seq Expression	Cp4.1LG05g01020
Synteny	Cp4.1LG05g01020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAGTTTCAGAGCCTAAGGCAGAGGATGATGACCGAGTACAAGGAAACGGTCTGGCAAAGATACTTCACGGTGACAGGAGAGCACCCGAATGAGGAGGTGACAGAGAAGATAATATTGAGTGGCATGGGAGGAGTTTTTGGGGAGGGCGATAGAGGAACACGGGCAGGGAAAGGTGGCAGAGACGATGAAGGAGATACAGGTCCGACACGGGGTGGTGAAGGAGATAGAGAAGCGCTTGCTAGAGCTGCACAAAGAGTTTTTGGACATGGCAGTGATGGCGGAGGCACAAGGGCAGGAAATGGATAA

mRNA sequence

ATGATGGAGTTTCAGAGCCTAAGGCAGAGGATGATGACCGAGTACAAGGAAACGGTCTGGCAAAGATACTTCACGGTGACAGGAGAGCACCCGAATGAGGAGGTGACAGAGAAGATAATATTGAGTGGCATGGGAGGAGTTTTTGGGGAGGGCGATAGAGGAACACGGGCAGGGAAAGGTGGCAGAGACGATGAAGGAGATACAGGTCCGACACGGGGTGGTGAAGGAGATAGAGAAGCGCTTGCTAGAGCTGCACAAAGAGTTTTTGGACATGGCAGTGATGGCGGAGGCACAAGGGCAGGAAATGGATAA

Coding sequence (CDS)

ATGATGGAGTTTCAGAGCCTAAGGCAGAGGATGATGACCGAGTACAAGGAAACGGTCTGGCAAAGATACTTCACGGTGACAGGAGAGCACCCGAATGAGGAGGTGACAGAGAAGATAATATTGAGTGGCATGGGAGGAGTTTTTGGGGAGGGCGATAGAGGAACACGGGCAGGGAAAGGTGGCAGAGACGATGAAGGAGATACAGGTCCGACACGGGGTGGTGAAGGAGATAGAGAAGCGCTTGCTAGAGCTGCACAAAGAGTTTTTGGACATGGCAGTGATGGCGGAGGCACAAGGGCAGGAAATGGATAA

Protein sequence

MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMGGVFGEGDRGTRAGKGGRDDEGDTGPTRGGEGDREALARAAQRVFGHGSDGGGTRAGNG

Homology

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy Swiss-Prot
Match: Q42374 (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana OX=3702 GN=KN PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMGG 47
           MMEFQ LRQ+MM+EYKETV +RYFTVTGEH N+E+ EKII    GG
Sbjct: 147 MMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIITDNAGG 192

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy Swiss-Prot
Match: Q9ZQZ8 (Syntaxin-123 OS=Arabidopsis thaliana OX=3702 GN=SYP123 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.3e-07
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 44
           M +FQ LR +M TEYKETV +RYFTVTG+  +EE  EK+I SG
Sbjct: 142 MDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLISSG 184

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy Swiss-Prot
Match: O64791 (Syntaxin-124 OS=Arabidopsis thaliana OX=3702 GN=SYP124 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 44
           M  FQ LR RM  EYKETV +RYFT+TGE  +E+  E +I SG
Sbjct: 139 MDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISSG 181

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy Swiss-Prot
Match: Q9SXB0 (Syntaxin-125 OS=Arabidopsis thaliana OX=3702 GN=SYP125 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-05
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 44
           M  FQ LR RM  EYKETV +RYFT+TGE  +E+  + +I SG
Sbjct: 134 MDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIASG 176

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy Swiss-Prot
Match: Q9ZSD4 (Syntaxin-121 OS=Arabidopsis thaliana OX=3702 GN=SYP121 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 21/43 (48.84%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 44
           M  F  LR+ + +EY+ETV +RYFTVTGE+P+E   +++I +G
Sbjct: 150 MDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLISTG 192

[Close]

BLAST of Cp4.1LG05g01020 vs. NCBI nr
Match: KAG7036293.1 (Syntaxin-related protein KNOLLE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 7.55e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 43
          MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG
Sbjct: 1  MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 43

[Close]

BLAST of Cp4.1LG05g01020 vs. NCBI nr
Match: KAG6606350.1 (Syntaxin-related protein KNOLLE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.1 bits (222), Expect = 8.43e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 43
          MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG
Sbjct: 1  MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 43

[Close]

BLAST of Cp4.1LG05g01020 vs. NCBI nr
Match: RVW90044.1 (Syntaxin-related protein KNOLLE [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.29e-18
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMG-GVFGEGDRGTRAGK 60
           MM+FQ  RQRMM EYKETV ++YFTVTGE+P+EEV EKI   GMG   F E + G    +
Sbjct: 112 MMDFQGPRQRMMIEYKETVGRQYFTVTGEYPDEEVIEKIYRMGMGVRSFWEDNTGAWERE 171

Query: 61  GGRDDEGDTGPTRGGEGDREALARAAQRVFGHGSDGGGT 98
              D  GDTG  + G+GDRE L  AA  V GHG +GG T
Sbjct: 172 CVGDGGGDTGQAQCGKGDREELVGAAPSVSGHGDNGGST 210

[Close]

BLAST of Cp4.1LG05g01020 vs. NCBI nr
Match: KAG6603495.1 (Syntaxin-related protein KNOLLE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 1.53e-16
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMGGVFGEGDRGTR 56
           MMEFQSLRQRMMTEYKETV +RYFTVTGE  NEEV E+II     GVFGEGD+G R
Sbjct: 148 MMEFQSLRQRMMTEYKETVGRRYFTVTGEKANEEVIERIISDDGEGVFGEGDKGAR 203

[Close]

BLAST of Cp4.1LG05g01020 vs. NCBI nr
Match: CAB4285906.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 77.8 bits (190), Expect = 7.64e-15
Identity = 50/85 (58.82%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG--------MGGVFGEGD 60
           MM+FQ LRQRMMTEYKETV +RYFTVTGEHP+EEV EKII +G        +G    E  
Sbjct: 151 MMDFQGLRQRMMTEYKETVGRRYFTVTGEHPDEEVIEKIISNGDGNGGEEFLGKAIQEHG 210

Query: 61  RGTRAGKGGRDDEGDTGPTRGGEGD 77
           RG   G  G    GDTG  R GEGD
Sbjct: 211 RGKVLGNCG----GDTGQARRGEGD 231

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy TrEMBL
Match: A0A438HZZ6 (Syntaxin-related protein KNOLLE OS=Vitis vinifera OX=29760 GN=KN_1 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.11e-18
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMG-GVFGEGDRGTRAGK 60
           MM+FQ  RQRMM EYKETV ++YFTVTGE+P+EEV EKI   GMG   F E + G    +
Sbjct: 112 MMDFQGPRQRMMIEYKETVGRQYFTVTGEYPDEEVIEKIYRMGMGVRSFWEDNTGAWERE 171

Query: 61  GGRDDEGDTGPTRGGEGDREALARAAQRVFGHGSDGGGT 98
              D  GDTG  + G+GDRE L  AA  V GHG +GG T
Sbjct: 172 CVGDGGGDTGQAQCGKGDREELVGAAPSVSGHGDNGGST 210

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy TrEMBL
Match: A0A6J5VA26 (SynN domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS41990 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.70e-15
Identity = 50/85 (58.82%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG--------MGGVFGEGD 60
           MM+FQ LRQRMMTEYKETV +RYFTVTGEHP+EEV EKII +G        +G    E  
Sbjct: 151 MMDFQGLRQRMMTEYKETVGRRYFTVTGEHPDEEVIEKIISNGDGNGGEEFLGKAIQEHG 210

Query: 61  RGTRAGKGGRDDEGDTGPTRGGEGD 77
           RG   G  G    GDTG  R GEGD
Sbjct: 211 RGKVLGNCG----GDTGQARRGEGD 231

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy TrEMBL
Match: M1BCA9 (Knolle OS=Solanum tuberosum OX=4113 GN=102589897 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.25e-14
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMG 45
           MMEFQ LRQRMMTEYKETV +RYFTVTGEHP+EEV +KII SG G
Sbjct: 146 MMEFQGLRQRMMTEYKETVGRRYFTVTGEHPDEEVIDKIISSGNG 190

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy TrEMBL
Match: A0A1S4ASS4 (syntaxin-related protein KNOLLE-like OS=Nicotiana tabacum OX=4097 GN=LOC107800892 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.25e-14
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMG 45
           MM+FQ LRQRMMTEYKETV +RYFTVTGEHP+EEV EKII SG G
Sbjct: 146 MMDFQGLRQRMMTEYKETVGRRYFTVTGEHPDEEVIEKIISSGNG 190

[Close]

BLAST of Cp4.1LG05g01020 vs. ExPASy TrEMBL
Match: A0A314LA81 (Syntaxin-related protein knolle OS=Nicotiana attenuata OX=49451 GN=KN PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.25e-14
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMG 45
           MM+FQ LRQRMMTEYKETV +RYFTVTGEHP+EEV EKII SG G
Sbjct: 146 MMDFQGLRQRMMTEYKETVGRRYFTVTGEHPDEEVIEKIISSGNG 190

[Close]

BLAST of Cp4.1LG05g01020 vs. TAIR 10
Match: AT1G08560.1 (syntaxin of plants 111 )

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSGMGG 47
           MMEFQ LRQ+MM+EYKETV +RYFTVTGEH N+E+ EKII    GG
Sbjct: 147 MMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIITDNAGG 192

[Close]

BLAST of Cp4.1LG05g01020 vs. TAIR 10
Match: AT4G03330.1 (syntaxin of plants 123 )

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-08
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 44
           M +FQ LR +M TEYKETV +RYFTVTG+  +EE  EK+I SG
Sbjct: 142 MDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLISSG 184

[Close]

BLAST of Cp4.1LG05g01020 vs. TAIR 10
Match: AT1G61290.1 (syntaxin of plants 124 )

HSP 1 Score: 50.8 bits (120), Expect = 7.4e-07
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 44
           M  FQ LR RM  EYKETV +RYFT+TGE  +E+  E +I SG
Sbjct: 139 MDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISSG 181

[Close]

BLAST of Cp4.1LG05g01020 vs. TAIR 10
Match: AT1G11250.1 (syntaxin of plants 125 )

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 44
           M  FQ LR RM  EYKETV +RYFT+TGE  +E+  + +I SG
Sbjct: 134 MDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIASG 176

[Close]

BLAST of Cp4.1LG05g01020 vs. TAIR 10
Match: AT3G11820.2 (syntaxin of plants 121 )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 21/43 (48.84%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 1   MMEFQSLRQRMMTEYKETVWQRYFTVTGEHPNEEVTEKIILSG 44
           M  F  LR+ + +EY+ETV +RYFTVTGE+P+E   +++I +G
Sbjct: 119 MDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLISTG 161

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g01020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42374	4.9e-11	71.74	Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana OX=3702 GN=KN PE=1 SV=1	[more]
Q9ZQZ8	7.3e-07	62.79	Syntaxin-123 OS=Arabidopsis thaliana OX=3702 GN=SYP123 PE=2 SV=1	[more]
O64791	1.0e-05	58.14	Syntaxin-124 OS=Arabidopsis thaliana OX=3702 GN=SYP124 PE=2 SV=1	[more]
Q9SXB0	2.3e-05	55.81	Syntaxin-125 OS=Arabidopsis thaliana OX=3702 GN=SYP125 PE=2 SV=1	[more]
Q9ZSD4	1.5e-04	48.84	Syntaxin-121 OS=Arabidopsis thaliana OX=3702 GN=SYP121 PE=1 SV=1	[more]

BLAST of Cp4.1LG05g01020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036293.1	7.55e-21	100.00	Syntaxin-related protein KNOLLE, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6606350.1	8.43e-21	100.00	Syntaxin-related protein KNOLLE, partial [Cucurbita argyrosperma subsp. sororia]	[more]
RVW90044.1	2.29e-18	55.56	Syntaxin-related protein KNOLLE [Vitis vinifera]	[more]
KAG6603495.1	1.53e-16	76.79	Syntaxin-related protein KNOLLE, partial [Cucurbita argyrosperma subsp. sororia]	[more]
CAB4285906.1	7.64e-15	58.82	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Cp4.1LG05g01020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HZZ6	1.11e-18	55.56	Syntaxin-related protein KNOLLE OS=Vitis vinifera OX=29760 GN=KN_1 PE=4 SV=1	[more]
A0A6J5VA26	3.70e-15	58.82	SynN domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS41990...	[more]
M1BCA9	5.25e-14	82.22	Knolle OS=Solanum tuberosum OX=4113 GN=102589897 PE=3 SV=1	[more]
A0A1S4ASS4	5.25e-14	82.22	syntaxin-related protein KNOLLE-like OS=Nicotiana tabacum OX=4097 GN=LOC10780089...	[more]
A0A314LA81	5.25e-14	82.22	Syntaxin-related protein knolle OS=Nicotiana attenuata OX=49451 GN=KN PE=3 SV=1	[more]

BLAST of Cp4.1LG05g01020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08560.1	3.4e-12	71.74	syntaxin of plants 111	[more]
AT4G03330.1	5.2e-08	62.79	syntaxin of plants 123	[more]
AT1G61290.1	7.4e-07	58.14	syntaxin of plants 124	[more]
AT1G11250.1	1.7e-06	55.81	syntaxin of plants 125	[more]
AT3G11820.2	1.1e-05	48.84	syntaxin of plants 121	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006011	Syntaxin, N-terminal domain	PFAM	PF00804	Syntaxin	coord: 1..48 e-value: 1.6E-9 score: 37.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..84
None	No IPR available	PANTHER	PTHR19957	SYNTAXIN	coord: 1..46
None	No IPR available	PANTHER	PTHR19957:SF251	SYNTAXIN-RELATED PROTEIN KNOLLE	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g01020.1	Cp4.1LG05g01020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006887	exocytosis
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0048278	vesicle docking
biological_process	GO:0006906	vesicle fusion
cellular_component	GO:0009504	cell plate
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0031201	SNARE complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0000149	SNARE binding