Cp4.1LG05g00770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g00770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	acanthoscurrin-2-like
Location	Cp4.1LG05: 543871 .. 544377 (-)
RNA-Seq Expression	Cp4.1LG05g00770
Synteny	Cp4.1LG05g00770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATGAGCTGATTTTGGTTATGGCTATGGCTATGGTTATGGTTGCATTTGCAGGCTGTGTTACTGCAAGAACTGCCCCAAATGATGGGGCGAAAAGCGTCAGTGACCAAAAAAACTTCGTCAACTATGGTGGGGTTGGTGGCTTTTCTGGCATTGGTGACAGCGGACTCCCCTTTGGAGGGGCTGGGGGCGTTGTCGGGTTCGGCGGTGGCAGTGGCATTGGCGGACTTGGAGGGGGCGGTGGCATTGGTGGACTCGGAGGGGGTGGTGGCTTAGGTGGGCTCGGCGGTGGCATTGGCGGACATGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGCGGACATGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGTGGATACGGTGGGGGTGGTGGCTTAGGCGGGCTCGGCGGTGGCATTGGTGGATATGGTGGGGGCGGTGTCGGAATTGGAGTTGGTGGAGGATTTGTTAAGATCCCTTAA

mRNA sequence

ATGGCGAATGAGCTGATTTTGGTTATGGCTATGGCTATGGTTATGGTTGCATTTGCAGGCTGTGTTACTGCAAGAACTGCCCCAAATGATGGGGCGAAAAGCGTCAGTGACCAAAAAAACTTCGTCAACTATGGTGGGGTTGGTGGCTTTTCTGGCATTGGTGACAGCGGACTCCCCTTTGGAGGGGCTGGGGGCGTTGTCGGGTTCGGCGGTGGCAGTGGCATTGGCGGACTTGGAGGGGGCGGTGGCATTGGTGGACTCGGAGGGGGTGGTGGCTTAGGTGGGCTCGGCGGTGGCATTGGCGGACATGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGCGGACATGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGTGGATACGGTGGGGGTGGTGGCTTAGGCGGGCTCGGCGGTGGCATTGGTGGATATGGTGGGGGCGGTGTCGGAATTGGAGTTGGTGGAGGATTTGTTAAGATCCCTTAA

Coding sequence (CDS)

ATGGCGAATGAGCTGATTTTGGTTATGGCTATGGCTATGGTTATGGTTGCATTTGCAGGCTGTGTTACTGCAAGAACTGCCCCAAATGATGGGGCGAAAAGCGTCAGTGACCAAAAAAACTTCGTCAACTATGGTGGGGTTGGTGGCTTTTCTGGCATTGGTGACAGCGGACTCCCCTTTGGAGGGGCTGGGGGCGTTGTCGGGTTCGGCGGTGGCAGTGGCATTGGCGGACTTGGAGGGGGCGGTGGCATTGGTGGACTCGGAGGGGGTGGTGGCTTAGGTGGGCTCGGCGGTGGCATTGGCGGACATGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGCGGACATGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGTGGATACGGTGGGGGTGGTGGCTTAGGCGGGCTCGGCGGTGGCATTGGTGGATATGGTGGGGGCGGTGTCGGAATTGGAGTTGGTGGAGGATTTGTTAAGATCCCTTAA

Protein sequence

MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPFGGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP

Homology

[Close]

BLAST of Cp4.1LG05g00770 vs. NCBI nr
Match: XP_023532938.1 (acanthoscurrin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224 bits (571), Expect = 5.14e-72
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60

Query: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG 120
           GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG
Sbjct: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG 120

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP 168
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP
Sbjct: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP 168

[Close]

BLAST of Cp4.1LG05g00770 vs. NCBI nr
Match: XP_022996355.1 (glycine-rich protein 23-like [Cucurbita maxima])

HSP 1 Score: 218 bits (554), Expect = 1.99e-69
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60

Query: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG 120
           GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGG GG G
Sbjct: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGTGGLG 120

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP 168
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGG+GIGVGGGFVKIP
Sbjct: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 168

[Close]

BLAST of Cp4.1LG05g00770 vs. NCBI nr
Match: KAG6606332.1 (hypothetical protein SDJN03_03649, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036272.1 hypothetical protein SDJN02_03075, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207 bits (528), Expect = 1.52e-65
Identity = 160/168 (95.24%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60

Query: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG 120
           GGAGGVVGFGGGSGIGG     GIGGLGGGGGLGGLGGGIGGHGGGGGLGGL GGIGG G
Sbjct: 61  GGAGGVVGFGGGSGIGG-----GIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLG 120

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP 168
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGG+GIGVGGGFVKIP
Sbjct: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 163

[Close]

BLAST of Cp4.1LG05g00770 vs. NCBI nr
Match: XP_022931134.1 (acanthoscurrin-2-like [Cucurbita moschata])

HSP 1 Score: 188 bits (477), Expect = 1.92e-57
Identity = 144/168 (85.71%), Postives = 145/168 (86.31%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 42  MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 101

Query: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG 120
           GGAGGVVGFGGGSGIGG                     GIGG GGGGGLGGLGGGIGGHG
Sbjct: 102 GGAGGVVGFGGGSGIGG---------------------GIGGLGGGGGLGGLGGGIGGHG 161

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP 168
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGG+GIGVGG FVKIP
Sbjct: 162 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGRFVKIP 188

[Close]

BLAST of Cp4.1LG05g00770 vs. NCBI nr
Match: XP_011652144.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_000879 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 4.70e-17
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MAN-ELILVMAMAMVMVAFAGCVTARTAPND-GAKSVSDQKNFVNYGGVGGFSGIGDSGL 60
          MAN +L L++ MAM M AFA  VTART PND  AK ++DQKNF+NYGGVGGFSGIGDSGL
Sbjct: 1  MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61 PFGGAGGVVGFGGGSGIGGLGGG 81
          PFGG  G  G GGG G+GGLGGG
Sbjct: 61 PFGGGIGGGGLGGGGGLGGLGGG 83

[Close]

BLAST of Cp4.1LG05g00770 vs. ExPASy TrEMBL
Match: A0A6J1K6J1 (glycine-rich protein 23-like OS=Cucurbita maxima OX=3661 GN=LOC111491611 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 9.61e-70
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60

Query: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG 120
           GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGG GG G
Sbjct: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGTGGLG 120

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP 168
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGG+GIGVGGGFVKIP
Sbjct: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 168

[Close]

BLAST of Cp4.1LG05g00770 vs. ExPASy TrEMBL
Match: A0A6J1ETH1 (acanthoscurrin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437404 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 9.31e-58
Identity = 144/168 (85.71%), Postives = 145/168 (86.31%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 42  MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 101

Query: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG 120
           GGAGGVVGFGGGSGIGG                     GIGG GGGGGLGGLGGGIGGHG
Sbjct: 102 GGAGGVVGFGGGSGIGG---------------------GIGGLGGGGGLGGLGGGIGGHG 161

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP 168
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGG+GIGVGG FVKIP
Sbjct: 162 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGRFVKIP 188

[Close]

BLAST of Cp4.1LG05g00770 vs. ExPASy TrEMBL
Match: A0A0A0LEM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.27e-17
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MAN-ELILVMAMAMVMVAFAGCVTARTAPND-GAKSVSDQKNFVNYGGVGGFSGIGDSGL 60
          MAN +L L++ MAM M AFA  VTART PND  AK ++DQKNF+NYGGVGGFSGIGDSGL
Sbjct: 1  MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61 PFGGAGGVVGFGGGSGIGGLGGG 81
          PFGG  G  G GGG G+GGLGGG
Sbjct: 61 PFGGGIGGGGLGGGGGLGGLGGG 83

[Close]

BLAST of Cp4.1LG05g00770 vs. ExPASy TrEMBL
Match: A0A5A7UCJ9 (Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00690 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.84e-15
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 4  ELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPFGGA 63
           L+LVMAMA    A A  V ARTAPN+ AK ++DQKNF+NYGGVGGFSGIGD GLPFGG 
Sbjct: 7  NLMLVMAMA----ALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLPFGGG 66

Query: 64 GGVVGFGGGSGIGGLGGG 81
           G  G GGG G+GGLGGG
Sbjct: 67 FGGGGLGGGGGLGGLGGG 80

[Close]

BLAST of Cp4.1LG05g00770 vs. ExPASy TrEMBL
Match: A0A1S3BI24 (acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.84e-15
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 4  ELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPFGGA 63
           L+LVMAMA    A A  V ARTAPN+ AK ++DQKNF+NYGGVGGFSGIGD GLPFGG 
Sbjct: 7  NLMLVMAMA----ALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLPFGGG 66

Query: 64 GGVVGFGGGSGIGGLGGG 81
           G  G GGG G+GGLGGG
Sbjct: 67 FGGGGLGGGGGLGGLGGG 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g00770 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g00770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532938.1	5.14e-72	100.00	acanthoscurrin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996355.1	1.99e-69	98.21	glycine-rich protein 23-like [Cucurbita maxima]	[more]
KAG6606332.1	1.52e-65	95.24	hypothetical protein SDJN03_03649, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931134.1	1.92e-57	85.71	acanthoscurrin-2-like [Cucurbita moschata]	[more]
XP_011652144.1	4.70e-17	71.08	glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypoth...	[more]

BLAST of Cp4.1LG05g00770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K6J1	9.61e-70	98.21	glycine-rich protein 23-like OS=Cucurbita maxima OX=3661 GN=LOC111491611 PE=4 SV...	[more]
A0A6J1ETH1	9.31e-58	85.71	acanthoscurrin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437404 PE=4 SV=1	[more]
A0A0A0LEM4	2.27e-17	71.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1	[more]
A0A5A7UCJ9	1.84e-15	69.23	Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A1S3BI24	1.84e-15	69.23	acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g00770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 152..168 score: 38.16 coord: 8..24 score: 21.32 coord: 128..138 score: 38.64 coord: 102..117 score: 51.56
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..116
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g00770.1	Cp4.1LG05g00770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane