Cp4.1LG05g00300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g00300
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor MYB41-like
Location	Cp4.1LG05: 897900 .. 898466 (+)
RNA-Seq Expression	Cp4.1LG05g00300
Synteny	Cp4.1LG05g00300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGTTGGGTTAGAAACTGGGGATGTGAATTATTATCCACTTCCTCCATTGATTTCTGAGTCGCCTGGTTCAACTTCAAATGTGAACCAAATTGAGTGTGGAACATATCCATTTTGTGGCTTCCCCAAACCACCTTCAATTTTCGACACTTTGGAGTCTATGATGAACGAAGAATCAAGTGAATCATACTGGAATAGAATTTTACAGTAAGTCTTTTTTAAAAATCAAACCTTTTCTATTTAATATTTTGGATTTCTATCGTGGATTTGAGAAAAGCCATTTGTTTAATCAAGATTAGCTTTATGAATTATTAGAAACCTAAACAATTTAATATGATTTTTTTTTTCGCAGATCAACAATTGAAGGGGGGGGTTTGCATGACATGAACTGAAGGGGGTGTTTTGTGTGGATCATAGGGATAAGATTACACTGTCATNTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGGTGTTCATATAATTTCAGACAGCTTTGGTGGATCAATCGAGCTGAATCAATATGTTGTTTATGTTTAGTGTTATAGGATACACACAGTAA

mRNA sequence

ATGGAAACTGGGGATGTGAATTATTATCCACTTCCTCCATTGATTTCTGAGTCGCCTGGTTCAACTTCAAATGTGAACCAAATTGAGTGTGGAACATATCCATTTTGTGGCTTCCCCAAACCACCTTCAATTTTCGACACTTTGGAGTCTATGATGAACGAAGAATCAAGTGAATCATACTGGAATAGAATTTTACAATCAACAATTGAAGGGGGGGGATACACACAGTAA

Coding sequence (CDS)

ATGGAAACTGGGGATGTGAATTATTATCCACTTCCTCCATTGATTTCTGAGTCGCCTGGTTCAACTTCAAATGTGAACCAAATTGAGTGTGGAACATATCCATTTTGTGGCTTCCCCAAACCACCTTCAATTTTCGACACTTTGGAGTCTATGATGAACGAAGAATCAAGTGAATCATACTGGAATAGAATTTTACAATCAACAATTGAAGGGGGGGGATACACACAGTAA

Protein sequence

METGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESYWNRILQSTIEGGGYTQ

Homology

[Close]

BLAST of Cp4.1LG05g00300 vs. NCBI nr
Match: XP_022995479.1 (transcription factor MYB39-like [Cucurbita maxima])

HSP 1 Score: 147 bits (370), Expect = 1.15e-41
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   METGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESY 60
           +ETGDVNYYPLPPLISESPGSTSNVNQIECGTYPF GFPKPPSIFDTLESMMNEE SESY
Sbjct: 207 LETGDVNYYPLPPLISESPGSTSNVNQIECGTYPFSGFPKPPSIFDTLESMMNEEPSESY 266

Query: 61  WNRILQSTIEGG 72
           W R+LQSTIEGG
Sbjct: 267 WTRLLQSTIEGG 278

[Close]

BLAST of Cp4.1LG05g00300 vs. NCBI nr
Match: XP_023532955.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144 bits (362), Expect = 1.70e-40
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   METGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESY 60
           +ETGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESY
Sbjct: 214 LETGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESY 273

Query: 61  WNRILQ 66
           WNRILQ
Sbjct: 274 WNRILQ 279

[Close]

BLAST of Cp4.1LG05g00300 vs. NCBI nr
Match: XP_022930987.1 (transcription factor MYB41-like [Cucurbita moschata])

HSP 1 Score: 136 bits (343), Expect = 1.44e-37
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   METGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESY 60
           + TGDVNYYPLPPLI ESPGSTSNVNQIECGTYPFCG PKPP IFDTLESMMNEE S SY
Sbjct: 211 LHTGDVNYYPLPPLICESPGSTSNVNQIECGTYPFCGRPKPPPIFDTLESMMNEEPSVSY 270

Query: 61  WNRILQSTIEGG 72
           W R+L STIEGG
Sbjct: 271 WTRVLLSTIEGG 282

[Close]

BLAST of Cp4.1LG05g00300 vs. NCBI nr
Match: KAG6606263.1 (Transcription factor MYB92, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (317), Expect = 8.54e-34
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 2   ETGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESYW 61
           ETGDVNYYPLPPLI ESPGSTSNVNQIECGTYPFCG PKPP IFDTLESMMNEE S SYW
Sbjct: 210 ETGDVNYYPLPPLICESPGSTSNVNQIECGTYPFCGRPKPPPIFDTLESMMNEEPSVSYW 269

Query: 62  NRIL 65
            R+L
Sbjct: 270 TRVL 273

[Close]

BLAST of Cp4.1LG05g00300 vs. NCBI nr
Match: KAG7036204.1 (Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 8.54e-34
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 2   ETGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESYW 61
           ETGDVNYYPLPPLI ESPGSTSNVNQIECGTYPFCG PKPP IFDTLESMMNEE S SYW
Sbjct: 210 ETGDVNYYPLPPLICESPGSTSNVNQIECGTYPFCGRPKPPPIFDTLESMMNEEPSVSYW 269

Query: 62  NRIL 65
            R+L
Sbjct: 270 TRVL 273

[Close]

BLAST of Cp4.1LG05g00300 vs. ExPASy TrEMBL
Match: A0A6J1K5W8 (transcription factor MYB39-like OS=Cucurbita maxima OX=3661 GN=LOC111491004 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 5.58e-42
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   METGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESY 60
           +ETGDVNYYPLPPLISESPGSTSNVNQIECGTYPF GFPKPPSIFDTLESMMNEE SESY
Sbjct: 207 LETGDVNYYPLPPLISESPGSTSNVNQIECGTYPFSGFPKPPSIFDTLESMMNEEPSESY 266

Query: 61  WNRILQSTIEGG 72
           W R+LQSTIEGG
Sbjct: 267 WTRLLQSTIEGG 278

[Close]

BLAST of Cp4.1LG05g00300 vs. ExPASy TrEMBL
Match: A0A6J1ES81 (transcription factor MYB41-like OS=Cucurbita moschata OX=3662 GN=LOC111437315 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 6.97e-38
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   METGDVNYYPLPPLISESPGSTSNVNQIECGTYPFCGFPKPPSIFDTLESMMNEESSESY 60
           + TGDVNYYPLPPLI ESPGSTSNVNQIECGTYPFCG PKPP IFDTLESMMNEE S SY
Sbjct: 211 LHTGDVNYYPLPPLICESPGSTSNVNQIECGTYPFCGRPKPPPIFDTLESMMNEEPSVSY 270

Query: 61  WNRILQSTIEGG 72
           W R+L STIEGG
Sbjct: 271 WTRVLLSTIEGG 282

[Close]

BLAST of Cp4.1LG05g00300 vs. ExPASy TrEMBL
Match: A0A6J1BQG2 (transcription factor MYB41-like OS=Momordica charantia OX=3673 GN=LOC111004510 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.34e-13
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 7   NYYP-LPPLISESPGSTSNVNQIECGTYPFCGFPKPPS-IFDTLESMMN-EESSESYWNR 66
           NYYP LPPLISESPGS SNVNQIE         P   S IFD+LES+MN EE++ SYWN 
Sbjct: 238 NYYPVLPPLISESPGSASNVNQIES---EISNSPAADSSIFDSLESLMNDEEANGSYWND 297

Query: 67  ILQSTI 69
           IL+STI
Sbjct: 298 ILRSTI 300

[Close]

BLAST of Cp4.1LG05g00300 vs. ExPASy TrEMBL
Match: A0A0A0LH60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901100 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.35e-12
Identity = 43/69 (62.32%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 7   NYYPLPPLISESP-GSTSNVNQIEC-GTYPFC-----GFPKPPS-IFDTLESMMNE-ESS 66
           NYY LPPLI ESP GSTSNVNQIE   T P C       P P S IFD+LES+MN+ E+S
Sbjct: 119 NYYQLPPLILESPDGSTSNVNQIESIETNPLCFSTNSNSPTPSSSIFDSLESLMNDDEAS 178

[Close]

BLAST of Cp4.1LG05g00300 vs. ExPASy TrEMBL
Match: A0A1S3CQ73 (transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103503563 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.20e-12
Identity = 46/73 (63.01%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 7   NYYPLPPLISESP-GSTSNVNQ-IEC-GTYPFC-----GFPKPPS-IFDTLESMMNE-ES 66
           NYY LPPLI ESP GSTSNVNQ IE   T P C       P P S IFD+LES+MN+ E+
Sbjct: 238 NYYQLPPLILESPDGSTSNVNQQIESIETNPLCFSTNSNSPTPSSSIFDSLESLMNDDEA 297

Query: 67  SESYWNRILQSTI 69
           S SYW  ILQSTI
Sbjct: 298 SGSYWKNILQSTI 310

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g00300 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g00300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995479.1	1.15e-41	93.06	transcription factor MYB39-like [Cucurbita maxima]	[more]
XP_023532955.1	1.70e-40	98.48	transcription factor MYB41-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930987.1	1.44e-37	86.11	transcription factor MYB41-like [Cucurbita moschata]	[more]
KAG6606263.1	8.54e-34	89.06	Transcription factor MYB92, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7036204.1	8.54e-34	89.06	Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of Cp4.1LG05g00300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K5W8	5.58e-42	93.06	transcription factor MYB39-like OS=Cucurbita maxima OX=3661 GN=LOC111491004 PE=4...	[more]
A0A6J1ES81	6.97e-38	86.11	transcription factor MYB41-like OS=Cucurbita moschata OX=3662 GN=LOC111437315 PE...	[more]
A0A6J1BQG2	6.34e-13	65.15	transcription factor MYB41-like OS=Momordica charantia OX=3673 GN=LOC111004510 P...	[more]
A0A0A0LH60	4.35e-12	62.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901100 PE=4 SV=1	[more]
A0A1S3CQ73	9.20e-12	63.01	transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103503563 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g00300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g00300.1	Cp4.1LG05g00300.1	mRNA