
Cp4.1LG04g13770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTTTTTTTTTTTGCTTTTTAGTGGTCAAAGAAACACTTAAAAAATTCTTCACTTTAGTTCCATGGTTGTTTAATTATATCCCTAAACGACTTAGCCACTCAAATCAATTATATCTCAAACTATAAGAGGAACAGGAAGGGATTAAGCCATTGGCATCCAATTCTCTGATTGCCGCTAACTCTGTCAGCCTCCATTTCGCCTTTTCTTCTTCTTCTTCTTCTTCCCTTTGCTTCCTTTTTCGTTAACCCATTAATCGATCTTCCCTTCATTCCTCCGCCATTGATAGACTTCACTCATTCTTCCCCAATTTCTTTACCTAAATCGCATTCTCTTCGCCAATGTCTTCAATCCCACGAATCTTTTTGCTTTTCTCCCTCGGTTTCTCTCTTTTTCCCTCGTTTTTCTCTCTTCCCCATCCAGACCCACTTACAATCCGTCCATTTCAGGTTAACCAGTCGCCGCCAGCCACTATTCCGGCCTTCCCTGAACAATCCGATGTTCAGGGCTGCCCGTTAGACCTCCCTGATGAGCTCTTCCATGGGGTTAAGACTGCTTGTGGTCCTTCTAAAGGGGGTGTCTCCGGGGAGCTCCATCGTAGCCGTTGCTGTCCGGTCTTGGCTGCTTGGCTCTACGCTGCTTACTCTGCTACCGCATTGCAGAGAGCTGGACGACCCGGCGCAGCTGCTGGCCACACAACGCCGTCGTATGACCTGCCGCTTCTACCGGATGACTCCGAAACTTGCGTCAGTAACTTGGATCAAGCGTTGAATCAAAGGGGAATCGAGCTAATGAAACCTAATGAGACTTGTGATGTGGTTTATTGCTATTGCGGCATAAGATTACACCCTTTGAGCTGCCCTGAAGCGTTTTCAGTGAACCAGAATGGGATTCTTGAAGGAGATAGAAATGTGAAGAGATTGGAGAGAAATTGCTTGAGCAATGGTAATGTCAATGGATTTCCAGGCCTTGGTGGCTGTTCAAAATGCTTGAAAAGCCTTTATCAGGTGAGCAATTTTCTCATTGAACTGGAGCTTGTTTGAGTTTTATGTGTCATTAACTGATTGATAATCTGCTTAACTTTTACAATGATCTTGATGAGAAAATTTCTGGGTTTGTTTCAAATTGAACGAATCATATGAAAGGGAAAACAAAAATCAAATCATAACTGGAAATGGGCCATTTGGTAGTGACTTTACTGAAGAACATGACAAACTCACGTGATCTTGATAAGAATCAAGCCTATATGACATATGGCATTCTCTGTTTGAGTAGTGAAATCTGCAGATCATATCATTGAACAAGATAATTCATTTGATGTTCTTGATTTTTGAACTCATTTAATTGCTTCACGTTGTTTAGAAGCTAGATCATTGTAGTTTCATTAGATTCAGCTCCAACTGATAGAAATACAATGAACTAATGCACCAAACTTCTATGATTATGTATTTGGATATTGAGACACTAACATAATGCAGCTCAACGACAAAGAAACTTTGAATTCAAGCAAGGCAGAGAACAGGACCACCAAGATGCACCACAAGGAGTGTCAGCTGATGGGTCTAACATGGCTTCTTGCCAAGAACCGAACGGCGTATATCCACACCATTACGTCGGTGCTTCGCGCTAAAATGATGAGCAAAGACGGGTCGGATCCTAAATCGTGTACTCTCAACAGCGACGGAATGCCTCTGGCTGTCGATTCAGCCGAGATCTCAGGCAGTTCTGTGTCAACTCCAATTCAGGCATCACTGAATCTCGGCCTGGTTTGGGCTGGTTTGTTGTACAATATGATCATGTGGGTATCTACACGATGAGGTTAGAAGTGATTTCACTTAGAAATTTGTAACTGTGACCTTTTCTTTTTTTGCCTTTTTTTGTGCATTGTGATTGTTGTTCTGTATTGATGAGGGTTCAGAAATGATCTTTGTTCTCTGTGTTGATTGGAAAATGCCAAATTCTTTTCTGATATGCCCTCTGGGTAAGTTTCATTGCTGCTAGGTCCTTGAAATTGGGGTTTTTGTGAAATTTTTTGAAAATTTGCATGTGCAGAGAGGGCCTATTTGTTTTGTCTTTGATGGCCATTGTTCTATTATTTTCTGGCTTTTGTTTGGTGGCATTATATAGATGAAGATAAAATAGCATGCATATTTT TATTTTTTTTTTTTGCTTTTTAGTGGTCAAAGAAACACTTAAAAAATTCTTCACTTTAGTTCCATGGTTGTTTAATTATATCCCTAAACGACTTAGCCACTCAAATCAATTATATCTCAAACTATAAGAGGAACAGGAAGGGATTAAGCCATTGGCATCCAATTCTCTGATTGCCGCTAACTCTGTCAGCCTCCATTTCGCCTTTTCTTCTTCTTCTTCTTCTTCCCTTTGCTTCCTTTTTCGTTAACCCATTAATCGATCTTCCCTTCATTCCTCCGCCATTGATAGACTTCACTCATTCTTCCCCAATTTCTTTACCTAAATCGCATTCTCTTCGCCAATGTCTTCAATCCCACGAATCTTTTTGCTTTTCTCCCTCGGTTTCTCTCTTTTTCCCTCGTTTTTCTCTCTTCCCCATCCAGACCCACTTACAATCCGTCCATTTCAGGTTAACCAGTCGCCGCCAGCCACTATTCCGGCCTTCCCTGAACAATCCGATGTTCAGGGCTGCCCGTTAGACCTCCCTGATGAGCTCTTCCATGGGGTTAAGACTGCTTGTGGTCCTTCTAAAGGGGGTGTCTCCGGGGAGCTCCATCGTAGCCGTTGCTGTCCGGTCTTGGCTGCTTGGCTCTACGCTGCTTACTCTGCTACCGCATTGCAGAGAGCTGGACGACCCGGCGCAGCTGCTGGCCACACAACGCCGTCGTATGACCTGCCGCTTCTACCGGATGACTCCGAAACTTGCGTCAGTAACTTGGATCAAGCGTTGAATCAAAGGGGAATCGAGCTAATGAAACCTAATGAGACTTGTGATGTGGTTTATTGCTATTGCGGCATAAGATTACACCCTTTGAGCTGCCCTGAAGCGTTTTCAGTGAACCAGAATGGGATTCTTGAAGGAGATAGAAATGTGAAGAGATTGGAGAGAAATTGCTTGAGCAATGGTAATGTCAATGGATTTCCAGGCCTTGGTGGCTGTTCAAAATGCTTGAAAAGCCTTTATCAGCTCAACGACAAAGAAACTTTGAATTCAAGCAAGGCAGAGAACAGGACCACCAAGATGCACCACAAGGAGTGTCAGCTGATGGGTCTAACATGGCTTCTTGCCAAGAACCGAACGGCGTATATCCACACCATTACGTCGGTGCTTCGCGCTAAAATGATGAGCAAAGACGGGTCGGATCCTAAATCGTGTACTCTCAACAGCGACGGAATGCCTCTGGCTGTCGATTCAGCCGAGATCTCAGGCAGTTCTGTGTCAACTCCAATTCAGGCATCACTGAATCTCGGCCTGGTTTGGGCTGGTTTGTTGTACAATATGATCATGTGGGTATCTACACGATGAGGTTAGAAGTGATTTCACTTAGAAATTTGTAACTGTGACCTTTTCTTTTTTTGCCTTTTTTTGTGCATTGTGATTGTTGTTCTGTATTGATGAGGGTTCAGAAATGATCTTTGTTCTCTGTGTTGATTGGAAAATGCCAAATTCTTTTCTGATATGCCCTCTGGGTAAGTTTCATTGCTGCTAGGTCCTTGAAATTGGGGTTTTTGTGAAATTTTTTGAAAATTTGCATGTGCAGAGAGGGCCTATTTGTTTTGTCTTTGATGGCCATTGTTCTATTATTTTCTGGCTTTTGTTTGGTGGCATTATATAGATGAAGATAAAATAGCATGCATATTTT ATGTCTTCAATCCCACGAATCTTTTTGCTTTTCTCCCTCGGTTTCTCTCTTTTTCCCTCGTTTTTCTCTCTTCCCCATCCAGACCCACTTACAATCCGTCCATTTCAGGTTAACCAGTCGCCGCCAGCCACTATTCCGGCCTTCCCTGAACAATCCGATGTTCAGGGCTGCCCGTTAGACCTCCCTGATGAGCTCTTCCATGGGGTTAAGACTGCTTGTGGTCCTTCTAAAGGGGGTGTCTCCGGGGAGCTCCATCGTAGCCGTTGCTGTCCGGTCTTGGCTGCTTGGCTCTACGCTGCTTACTCTGCTACCGCATTGCAGAGAGCTGGACGACCCGGCGCAGCTGCTGGCCACACAACGCCGTCGTATGACCTGCCGCTTCTACCGGATGACTCCGAAACTTGCGTCAGTAACTTGGATCAAGCGTTGAATCAAAGGGGAATCGAGCTAATGAAACCTAATGAGACTTGTGATGTGGTTTATTGCTATTGCGGCATAAGATTACACCCTTTGAGCTGCCCTGAAGCGTTTTCAGTGAACCAGAATGGGATTCTTGAAGGAGATAGAAATGTGAAGAGATTGGAGAGAAATTGCTTGAGCAATGGTAATGTCAATGGATTTCCAGGCCTTGGTGGCTGTTCAAAATGCTTGAAAAGCCTTTATCAGCTCAACGACAAAGAAACTTTGAATTCAAGCAAGGCAGAGAACAGGACCACCAAGATGCACCACAAGGAGTGTCAGCTGATGGGTCTAACATGGCTTCTTGCCAAGAACCGAACGGCGTATATCCACACCATTACGTCGGTGCTTCGCGCTAAAATGATGAGCAAAGACGGGTCGGATCCTAAATCGTGTACTCTCAACAGCGACGGAATGCCTCTGGCTGTCGATTCAGCCGAGATCTCAGGCAGTTCTGTGTCAACTCCAATTCAGGCATCACTGAATCTCGGCCTGGTTTGGGCTGGTTTGTTGTACAATATGATCATGTGGGTATCTACACGATGA MSSIPRIFLLFSLGFSLFPSFFSLPHPDPLTIRPFQVNQSPPATIPAFPEQSDVQGCPLDLPDELFHGVKTACGPSKGGVSGELHRSRCCPVLAAWLYAAYSATALQRAGRPGAAAGHTTPSYDLPLLPDDSETCVSNLDQALNQRGIELMKPNETCDVVYCYCGIRLHPLSCPEAFSVNQNGILEGDRNVKRLERNCLSNGNVNGFPGLGGCSKCLKSLYQLNDKETLNSSKAENRTTKMHHKECQLMGLTWLLAKNRTAYIHTITSVLRAKMMSKDGSDPKSCTLNSDGMPLAVDSAEISGSSVSTPIQASLNLGLVWAGLLYNMIMWVSTR Homology
BLAST of Cp4.1LG04g13770 vs. ExPASy Swiss-Prot
Match: Q9SUC9 (Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana OX=3702 GN=At4g28100 PE=2 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 1.1e-51 Identity = 132/311 (42.44%), Postives = 175/311 (56.27%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. NCBI nr
Match: XP_023531799.1 (uncharacterized GPI-anchored protein At4g28100-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 682 bits (1760), Expect = 1.03e-247 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. NCBI nr
Match: XP_022933713.1 (uncharacterized GPI-anchored protein At4g28100-like [Cucurbita moschata]) HSP 1 Score: 677 bits (1747), Expect = 9.90e-246 Identity = 331/334 (99.10%), Postives = 333/334 (99.70%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. NCBI nr
Match: KAG7021641.1 (putative GPI-anchored protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 675 bits (1742), Expect = 5.73e-245 Identity = 331/334 (99.10%), Postives = 332/334 (99.40%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. NCBI nr
Match: KAG6587677.1 (putative GPI-anchored protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 672 bits (1733), Expect = 1.35e-243 Identity = 330/334 (98.80%), Postives = 331/334 (99.10%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. NCBI nr
Match: XP_023005177.1 (uncharacterized GPI-anchored protein At4g28100-like [Cucurbita maxima]) HSP 1 Score: 668 bits (1723), Expect = 4.51e-242 Identity = 328/334 (98.20%), Postives = 330/334 (98.80%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. ExPASy TrEMBL
Match: A0A6J1F5L3 (uncharacterized GPI-anchored protein At4g28100-like OS=Cucurbita moschata OX=3662 GN=LOC111441048 PE=4 SV=1) HSP 1 Score: 677 bits (1747), Expect = 4.79e-246 Identity = 331/334 (99.10%), Postives = 333/334 (99.70%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. ExPASy TrEMBL
Match: A0A6J1KSF1 (uncharacterized GPI-anchored protein At4g28100-like OS=Cucurbita maxima OX=3661 GN=LOC111498281 PE=4 SV=1) HSP 1 Score: 668 bits (1723), Expect = 2.19e-242 Identity = 328/334 (98.20%), Postives = 330/334 (98.80%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. ExPASy TrEMBL
Match: A0A5D3DY25 (Putative GPI-anchored protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001150 PE=4 SV=1) HSP 1 Score: 620 bits (1599), Expect = 1.74e-223 Identity = 300/333 (90.09%), Postives = 316/333 (94.89%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. ExPASy TrEMBL
Match: A0A5A7UTR5 (Putative GPI-anchored protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004370 PE=4 SV=1) HSP 1 Score: 617 bits (1592), Expect = 2.03e-222 Identity = 300/333 (90.09%), Postives = 313/333 (93.99%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. ExPASy TrEMBL
Match: A0A1S3BWB4 (uncharacterized GPI-anchored protein At4g28100 OS=Cucumis melo OX=3656 GN=LOC103494171 PE=4 SV=1) HSP 1 Score: 617 bits (1592), Expect = 2.03e-222 Identity = 300/333 (90.09%), Postives = 313/333 (93.99%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. TAIR 10
Match: AT3G18050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 360.5 bits (924), Expect = 1.4e-99 Identity = 183/291 (62.89%), Postives = 216/291 (74.23%), Query Frame = 0
BLAST of Cp4.1LG04g13770 vs. TAIR 10
Match: AT4G28100.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 205.3 bits (521), Expect = 7.7e-53 Identity = 132/311 (42.44%), Postives = 175/311 (56.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|