Cp4.1LG04g12040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g12040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG04: 8395510 .. 8397982 (-)
RNA-Seq ExpressionCp4.1LG04g12040
SyntenyCp4.1LG04g12040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGATGCCCGGTGAGAAGTATACGCGGGCGGAGGTTGCGGCAGCAATCGAGAAGAACAAGAAGATTGAGGAACGAGAATTTGGGGTGAACCACGCTTGATTCAATGGGTACATTTGCTCTAAATTGTTTGTCTGATATTTGTTCCAGTATACATACGCCATTTGCTTGAGAAAACGTGATGAGTTGTTTGAATTTGCTTGATCAAACCCTGCGTGTAGGGTTATAGCGATTGATTTTGATTAGATTTGAGGCATTTGTGATCGACATCTCAACTTCGTCTTGCAATAACAAAATCTTTGGTGATTCCTTACTATTTTCGATGAAATGAAATTGCCGATGGATGTTCTGTCTTGTTCATACGACTCCTCTTTCATTTTTTGGTCATTTAGGAACTGGTTTCTTTAGCTTTAAATTCGGATCAGATGTAAGTATCCTTGTATTCAGACAAACAACCGTTGAGATTGAAGAGTTTTTCTTTTATCATTCTATTGAGCTTTCTTGATGTTTGGTTTATTCTCCTTCGATATTGCCACATAAGGAACTGAACTGTCTGCACTGTGCAGCTTGGTTATTGTAACAAGCTCACCGCCGGTAGATATTAGCTTCTTTGGACTTTTCTTTTCGAATTTCTCCTTCATATTTTTAAAATGCGTCTGCTAGGGAGAGTTTTCCACAACCTTATAAAGAATGCTTCGTTCTCCTCCCAACCGATGTGAGATCTCACAATCCACCTCCCTTCAGGGCTCAGCGTCCTTGCTGGTACTCGTTCTCCTCTTCGGTCAATGTAGGATCTCACAATCTACTCCCTTTTGGGGCCAGCGTCTTTGCTTGTACACCCCCAAAGGGGGATGGACACCAGGCAGTGTGCCAGCGAGAACACTAAGCTTCAAAGGGAGTAGACATCAGGCGGTGTATCAGCGAGGACGTTGGGCCCCGAAGGGGGTTGATTGTTAGATCCCACATTAATTGGAGAGGAGAAAGAGTGCCGCCAGCAAAGATGCTAGGCCCCAAAGGATGGTAGATTATGAAATTCCACATCGATTGGAGAGGGAAATGAAGTATTCTTTATAAGATTGTGGAAACCTCTTCTATGCAGACACGTTTTAAAAACTTTGAGGGGAAGTCTAAAAGGGAAAGCCCAAAGAAGACAATATATGCTTGCGGTAGCTTGGACATGGTTGTTACGGTTATGCTAACTTAATATATGCGTAATTGTTCCTATTTGAGTGTTCTCCTCTGATACTTTGATACTTTGTCATCACGTTTAGCTGTTCCTATCTGAGTTGTTATACTTTGTCATCACGTAGTTGTTACAGCTATGCTAACATAATATATGCGTAATTGTTCCTATCTGAGTGTTCTCTTCTGATACTTTGATACTTTGTCATCACGTTTAGCTGTTCCTATCTGAGTTGTTATACTTTGTCATCACGTAGTTGTTACAGTTATGCTAACATAATATATGCGTAATTGTTCCTATCTGAGTGTTCTCTTCTGATACTTTGATACTTTGTCATCACGTTTAGCTGTTCCTATCTGAGTTGTTATACTTTGTCATCACGTAGTTGTTACAGTTATGCTAACTTAATATATGCTAGCGGTAGCTTGGACATGATCTCCTCTGATACTTTGTCATCACGTTTAGCTGTTCCTATCTGAGTGTTCTAACTTTCTAAAGCATTTTCTATGTTCATCCATATCAAAAACCATTCTTTATTGATAATACCTCTGAGATTACATATCAAAAGCATGTAGAATCAAGTTCCAAATATATAGTATCATGACCAAAAAGGAAGAAAAAGTAGTGCCACAATCATTACATCAACGTATACATACAAACCATCAATGAGAAAGCAGGAAAATCTGACATCTAATGGCAAAGAAGCGCAACGAGGCAGACGAAAGTCGATAGCAGAACTCGACCACTGGAAAATGTCACCTGAAATCCAGCCCCAGCATCCATAGCAGGCAACGGTGCAAGCCCTCCGCTGTCTTGAGCTCTTGCCACTGCAAACAGAAGCACCACAGCCACCGTGAACCACCTCGTCGCCCTGTGGACACTGAATCTTGCCATTAATGTCTGCACAGAAAGCTCAAAAGGCAAGAAAGGAGAGGAAGGAGGAATGTTATGGAGGTGTAATATCAAATTTGGGAGGCAATATTTATAGAGATGAACTGAATATTGAGTTTAGTGATCGTGATGTTGCTTCTTTACATGGCTTTACAGCTCCTTTTGAGGATGACAGGTTAGCTTACTTTGCTGCTCACTGGGCCCTGTAATGCCTCTCCCGCATCTAACTTTGAGTAATATTGTGGTGTCAGGCAAGCATTTTTGTGTTTCTTGTGTCTTGCTCCTCATTCAAAGCCACTCTACCGTACTACTACTTGCCTTTTAATAGAGCATTACTGTCGGTCAGGTCGGATTGCTTTGTTCCTCTCCCTTACTTTACATTCGAGCAATTCCATTGCCTGA

mRNA sequence

GGGATGCCCGGTGAGAAGTATACGCGGGCGGAGGTTGCGGCAGCAATCGAGAAGAACAAGAAGATTGAGGAACGAGAATTTGGGGTGAACCACGCTTGATTCAATGGGTACATTTGCTCTAAATTGTTTGTCTGATATTTGTTCCAGTATACATACGCCATTTGCTTGAGAAAACGTGATGAGTTGTTTGAATTTGCTTGATCAAACCCTGCGTGTAGGGTTATAGCGATTGATTTTGATTAGATTTGAGGCATTTGTGATCGACATCTCAACTTCGTCTTGCAATAACAAAATCTTTGGTGATTCCTTACTATTTTCGATGAAATGAAATTGCCGATGGATGTTCTGTCTTGTTCATACGACTCCTCTTTCATTTTTTGGTCATTTAGGAACTGGTTTCTTTAGCTTTAAATTCGGATCAGATGTAAGTATCCTTGTATTCAGACAAACAACCGTTGAGATTGAAGAGTTTTTCTTTTATCATTCTATTGAGCTTTCTTGATGTTTGGTTTATTCTCCTTCGATATTGCCACATAAGGAACTGAACTGTCTGCACTGTGCAGCTTGGTTATTGTAACAAGCTCACCGCCGGTAGATATTAGCTTCTTTGGACTTTTCTTTTCGAATTTCTCCTTCATATTTTTAAAATGCGTCTGCTAGGGAGAGTTTTCCACAACCTTATAAAGAATGCTTCGTTCTCCTCCCAACCGATGTGAGATCTCACAATCCACCTCCCTTCAGGGCTCAGCGTCCTTGCTGGTACTCGTTCTCCTCTTCGGTCAATGTAGGATCTCACAATCTACTCCCTTTTGGGGCCAGCGTCTTTGCTTGTACACCCCCAAAGGGGGATGGACACCAGGCAGTGTGCCAGCGAGAACACTAAGCTTCAAAGGGAGTAGACATCAGGCGGTGTATCAGCGAGGACGTTGGGCCCCGAAGGGGGTTGATTGTTAGATCCCACATTAATTGGAGAGGAGAAAGAGTGCCGCCAGCAAAGATGCTAGGCCCCAAAGGATGGTAGATTATGAAATTCCACATCGATTGGAGAGGGAAATGAAGTATTCTTTATAAGATTGTGGAAACCTCTTCTATGCAGACACGTTTTAAAAACTTTGAGGGGAAGTCTAAAAGGGAAAGCCCAAAGAAGACAATATATGCTTGCGGTAGCTTGGACATGGTTGTTACGGTTATGCTAACTTAATATATGCGTAATTGTTCCTATTTGAGTGTTCTCCTCTGATACTTTGATACTTTGTCATCACGTTTAGCTGTTCCTATCTGAGTTGTTATACTTTGTCATCACGTAGTTGTTACAGCTATGCTAACATAATATATGCGTAATTGTTCCTATCTGAGTGTTCTCTTCTGATACTTTGATACTTTGTCATCACGTTTAGCTGTTCCTATCTGAGTTGTTATACTTTGTCATCACGTAGTTGTTACAGTTATGCTAACATAATATATGCGTAATTGTTCCTATCTGAGTGTTCTCTTCTGATACTTTGATACTTTGTCATCACGTTTAGCTGTTCCTATCTGAGTTGTTATACTTTGTCATCACGTAGTTGTTACAGTTATGCTAACTTAATATATGCTAGCGGTAGCTTGGACATGATCTCCTCTGATACTTTGTCATCACGTTTAGCTGTTCCTATCTGAGTGTTCTAACTTTCTAAAGCATTTTCTATGTTCATCCATATCAAAAACCATTCTTTATTGATAATACCTCTGAGATTACATATCAAAAGCATGTAGAATCAAGTTCCAAATATATAGTATCATGACCAAAAAGGAAGAAAAAGTAGTGCCACAATCATTACATCAACGTATACATACAAACCATCAATGAGAAAGCAGGAAAATCTGACATCTAATGGCAAAGAAGCGCAACGAGGCAGACGAAAGTCGATAGCAGAACTCGACCACTGGAAAATGTCACCTGAAATCCAGCCCCAGCATCCATAGCAGGCAACGGTGCAAGCCCTCCGCTGTCTTGAGCTCTTGCCACTGCAAACAGAAGCACCACAGCCACCGTGAACCACCTCGTCGCCCTGTGGACACTGAATCTTGCCATTAATGTCTGCACAGAAAGCTCAAAAGGCAAGAAAGGAGAGGAAGGAGGAATGTTATGGAGGTGTAATATCAAATTTGGGAGGCAATATTTATAGAGATGAACTGAATATTGAGTTTAGTGATCGTGATGTTGCTTCTTTACATGGCTTTACAGCTCCTTTTGAGGATGACAGGCAAGCATTTTTGTGTTTCTTGTGTCTTGCTCCTCATTCAAAGCCACTCTACCGTACTACTACTTGCCTTTTAATAGAGCATTACTGTCGGTCAGGTCGGATTGCTTTGTTCCTCTCCCTTACTTTACATTCGAGCAATTCCATTGCCTGA

Coding sequence (CDS)

ATGTCTGCACAGAAAGCTCAAAAGGCAAGAAAGGAGAGGAAGGAGGAATGTTATGGAGGTGTAATATCAAATTTGGGAGGCAATATTTATAGAGATGAACTGAATATTGAGTTTAGTGATCGTGATGTTGCTTCTTTACATGGCTTTACAGCTCCTTTTGAGGATGACAGGCAAGCATTTTTGTGTTTCTTGTGTCTTGCTCCTCATTCAAAGCCACTCTACCGTACTACTACTTGCCTTTTAATAGAGCATTACTGTCGGTCAGGTCGGATTGCTTTGTTCCTCTCCCTTACTTTACATTCGAGCAATTCCATTGCCTGA

Protein sequence

MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSDRDVASLHGFTAPFEDDRQAFLCFLCLAPHSKPLYRTTTCLLIEHYCRSGRIALFLSLTLHSSNSIA
Homology
[Close]
BLAST of Cp4.1LG04g12040 vs. NCBI nr
Match: XP_022927936.1 (uncharacterized protein LOC111434687 [Cucurbita moschata])

HSP 1 Score: 172 bits (436), Expect = 2.21e-53
Identity = 91/107 (85.05%), Postives = 93/107 (86.92%), Query Frame = 0 

Query: 1   MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSDRDVASLHGFTAPFEDDRQAF 60
           MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSD DVASL GFTAPFEDDRQAF
Sbjct: 1   MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSDSDVASLDGFTAPFEDDRQAF 60

Query: 61  LCFLCLAPHSKPLYRTTTCLLIEHYCRSGRIALFLSLTLH-SSNSIA 106
           LCFL LA HSKPLYRTTTCLLI+HYCRS    L  S  L+  SNSIA
Sbjct: 61  LCFLRLASHSKPLYRTTTCLLIQHYCRSHVGLLCSSSLLYIRSNSIA 107

[Close]
BLAST of Cp4.1LG04g12040 vs. NCBI nr
Match: KAG6588183.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111 bits (278), Expect = 5.05e-27
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1  MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSDRDVASLHGFTAPFEDD 56
          MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSD DVASL GFTAPFEDD
Sbjct: 1  MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSDSDVASLDGFTAPFEDD 56

[Close]
BLAST of Cp4.1LG04g12040 vs. ExPASy TrEMBL
Match: A0A6J1EIW2 (uncharacterized protein LOC111434687 OS=Cucurbita moschata OX=3662 GN=LOC111434687 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.07e-53
Identity = 91/107 (85.05%), Postives = 93/107 (86.92%), Query Frame = 0 

Query: 1   MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSDRDVASLHGFTAPFEDDRQAF 60
           MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSD DVASL GFTAPFEDDRQAF
Sbjct: 1   MSAQKAQKARKERKEECYGGVISNLGGNIYRDELNIEFSDSDVASLDGFTAPFEDDRQAF 60

Query: 61  LCFLCLAPHSKPLYRTTTCLLIEHYCRSGRIALFLSLTLH-SSNSIA 106
           LCFL LA HSKPLYRTTTCLLI+HYCRS    L  S  L+  SNSIA
Sbjct: 61  LCFLRLASHSKPLYRTTTCLLIQHYCRSHVGLLCSSSLLYIRSNSIA 107

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g12040 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g12040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022927936.12.21e-5385.05uncharacterized protein LOC111434687 [Cucurbita moschata][more]
KAG6588183.15.05e-2796.43Zinc finger A20 and AN1 domain-containing stress-associated protein 8, partial [... [more]
BLAST of Cp4.1LG04g12040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EIW21.07e-5385.05uncharacterized protein LOC111434687 OS=Cucurbita moschata OX=3662 GN=LOC1114346... [more]
BLAST of Cp4.1LG04g12040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g12040.1Cp4.1LG04g12040.1mRNA