Cp4.1LG04g11330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g11330
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG04: 8916988 .. 8919401 (-)
RNA-Seq Expression	Cp4.1LG04g11330
Synteny	Cp4.1LG04g11330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTAGGGTTTCTTCTTTTCGCCTATAAAAGGCTGCCTTCTGTGTCTCCAATGGCAGCCTCGGCTCTGAAGATCGTAATTCTATGATTCTCTTCCTTTCTTTTGAGTGTTAGATCTCTGTGACGATCATTATTGCGTGATTGTTTGATTTTCTGTTGTTGATCTAGTAACGGAGGAAGAAGCCTTATGTTGCGATTCTCTGGTCGGCCAAAATCTTCATCCGGAGAAATGGAAATCGATCAGAGAGCCTGTAGTTAGGCAATGCCGAAGATCGGTATCTTCTACTGCTCGTTCTGAATTTTTCGCTCTATCGTTTCTGGTTTCTTCGTTCAAATCTTGATTTTCTCGTCCTTTTTGGTTTTGTTTTTAATCTGGAGGTTTTTGATGTGAAAGGATGATAAAATCAGACGGATTCCCAATGATAATCCATGATATCACAACCAGCTACTTCTGATCACATCTAAATAACCTTGTAGATCGCATGTTCTATTGCTCGTTCTGAAATTTTCGTTCCATCACTTCTGGTTTTTTCGTTCAAATCTCGCATTTCTCGTCCTTTTTGTTGTTGTTTTTGAACTGGAGGTTTTTTTATGTGAAAGGATGAAAAAAATCAGACGGATTCCCAATGATAATCCATGATATTACAACCAGCTACTTCTGATCACATCTAAATAACCTTGTAGATCGTATATTCTATTTCTCGTTCTGAATTTTTCGTTCAATCGCTTCTGGTTTCTTCGTTCAAATCTCGCTTTTCTCGTCCTTTTTGGTTTTGTTTTTAATCCGGAGGTTTTTTATGTGAAAGGATGAAAAAAACCAGACGGATTCCCAATGATAATCCATGATATTACAACCAGCTACTTCTGATCACATCTAAATAACCTTCTAGTTACTTCTTCTGATTTTCTTTTATTTTCTTTTGAAAGAGCGATGACTGTCTCTTTGTTTTCATTGGCGTTTTCTCTATTTAACAAGGCCGTTGATGTGATTATAAATATTTGCTACTCTTGATGGTGTTATATGCCATTTGATGATCACTAACCACCAAGATCTCTGAGGCCGTTCTAGATGCTTTTTTATCAAACCAATTTATTGAATGATTTTCAGCTATACAGTCTCCAAGTTTTGTTCTTACTATTAAACTTCCAATAGAAAGATTATCAACACATTCAAAATTCAGTATATGTTTTGCCAAATCTAAATTAGTTTTGAACGCAAATAATATCTTTTCTCCATATCATTTCAGTTAAAGTACAGCCCTCGACCTTGGCTTTAAAAGGATAGTTGACCAAGCTCTTGCCTTGGGTGGTACCTCTTGATGGCGCACGTCAAGGAAGTTCCTCTGAGGGCACCTATGAAGGTCATGCACGAGACGACGAGCCAAATGGACCTCCTAAGGTTACTAAGCAAACGAACCTCCCATTCTTCAGTGATTGATAAGCCTGGAGTCCACCTCCTCCTCCACCCCCATGAATGCTTAGGAATGTGTGCCACTGCTTTCCAGCCATCTTGATTAATGTTCCTTTCAAACCAAATGTAATGTGAATCATTCAAGTTCTGATGATTTAGTGCGAACAAGACAAATCCATTCAAACTTAGTCCATTTATCTTCATTGGAAGTAAAACAGTCATTAATGTTCATCGCCAAGGAAAATAAATAATACACATTACAGAGTTCTTAACTAATTTTAATTTCAACAAATACTATGTTATAGATATTAAATAGTTAAAAGGTTTAAGCAGAAAATGATCTTATTTGACTGTTATACATTGTTAACATTAGAAAATGGGTATGAAACAATCCAACCTATTTGACCACTATACATTGTTAACATTAGAAAATAGGTCCGATAAAAAGTCCATTGATTCTCAATCTCGTAAAAATCCAAAAAGGGATCCATTTATAATCCTCTCAGTTTGATTAATGGATTGGCAGCGTGACAAATAAGAATAGAACTTCATATACTAATTTAGAATCCCGAGTTCTTTTAAGCTTGGTAGTTTTGGATAATGTTTTATATGCTTCTTTGTTTCATTGTAATGTTGCTCCAACCATTTATCCTACTTCGTAGAGTGATCAATTGTTCCATTGAATATAATAAGCAAACATCCCTCACTCACGTTCTCGTATAAATTAAGCAAACATCCAACCATTTATCCTAAGATGAATAATGAGGAGAATCAAATCTGTCAAAGTATATGAACTATGTCATAATTATTTCAACTTGTTTCATACTTAAACTAACACAAAAACATTAGATTAGCAACGCTAATTAGCTAAAAGTTTTTGTGTTTTTTTATTGTCCTATGATAAGATATATAAAACAGGAGCAAAAGAATGGAAGTCCTCACATCCTCATGATGACAATGTAACAAACAAACAGGTCGAGATGAACACTAAGAGAACTCTATAG

mRNA sequence

GGTTTAGGGTTTCTTCTTTTCGCCTATAAAAGGCTGCCTTCTGTGTCTCCAATGGCAGCCTCGGCTCTGAAGATCGAAGAAGCCTTATGTTGCGATTCTCTGGTCGGCCAAAATCTTCATCCGGAGAAATGGAAATCGATCAGAGAGCCTGTAGTTAGGCAATGCCGAAGATCGTTGACCAAGCTCTTGCCTTGGGTGGTACCTCTTGATGGCGCACGTCAAGGAAGTTCCTCTGAGGGCACCTATGAAGGTCATGCACGAGACGACGAGCCAAATGGACCTCCTAAGATATATAAAACAGGAGCAAAAGAATGGAAGTCCTCACATCCTCATGATGACAATGTAACAAACAAACAGGTCGAGATGAACACTAAGAGAACTCTATAG

Coding sequence (CDS)

GGTTTAGGGTTTCTTCTTTTCGCCTATAAAAGGCTGCCTTCTGTGTCTCCAATGGCAGCCTCGGCTCTGAAGATCGAAGAAGCCTTATGTTGCGATTCTCTGGTCGGCCAAAATCTTCATCCGGAGAAATGGAAATCGATCAGAGAGCCTGTAGTTAGGCAATGCCGAAGATCGTTGACCAAGCTCTTGCCTTGGGTGGTACCTCTTGATGGCGCACGTCAAGGAAGTTCCTCTGAGGGCACCTATGAAGGTCATGCACGAGACGACGAGCCAAATGGACCTCCTAAGATATATAAAACAGGAGCAAAAGAATGGAAGTCCTCACATCCTCATGATGACAATGTAACAAACAAACAGGTCGAGATGAACACTAAGAGAACTCTATAG

Protein sequence

GLGFLLFAYKRLPSVSPMAASALKIEEALCCDSLVGQNLHPEKWKSIREPVVRQCRRSLTKLLPWVVPLDGARQGSSSEGTYEGHARDDEPNGPPKIYKTGAKEWKSSHPHDDNVTNKQVEMNTKRTL

Homology

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BLAST of Cp4.1LG04g11330 vs. NCBI nr
Match: KAG6588116.1 (hypothetical protein SDJN03_16681, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 48.9 bits (115), Expect = 3.79e-04
Identity = 26/47 (55.32%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 61  KLLPWVVPLDGARQGSSS----------------EGTYEGHARDDEP 91
           KLLPWVVPLDGARQGSS                  GTYEGHA+D++P
Sbjct: 60  KLLPWVVPLDGARQGSSCLGWYLLMAHVKEALALGGTYEGHAQDNDP 106

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g11330 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g11330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588116.1	3.79e-04	55.32	hypothetical protein SDJN03_16681, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG04g11330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g11330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g11330.1	Cp4.1LG04g11330.1	mRNA