Cp4.1LG04g08940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g08940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG04: 10323529 .. 10323837 (-)
RNA-Seq ExpressionCp4.1LG04g08940
SyntenyCp4.1LG04g08940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTGAAGTGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCATGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCGCCAAAAATGGGGGCTGTCCGCATGCTCTTAACACCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACCACCTTTCTTCCGGTATATGTGCTAATGAAGTTTCAATTTGTTCAGAGAATTAA

mRNA sequence

ATGGGAGGTGAAGTGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCATGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCGCCAAAAATGGGGGCTGTCCGCATGCTCTTAACACCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACCACCTTTCTTCCGGTATATGTGCTAATGAAGTTTCAATTTGTTCAGAGAATTAA

Coding sequence (CDS)

ATGGGAGGTGAAGTGATGGGCGGATGTGTGTTCGATGGGAGCATTTCGATGCATGACTTTTTGATCGAACGAAGGCCTTACCATCGCAACTGTGGCTGCGCATTGCACCATCGCGCCAAAAATGGGGGCTGTCCGCATGCTCTTAACACCTCTGTTTCCTTTCTCAAAGCTCGGAAATGGACCGATACTTGTCGGCTGCAAATCCAGGCCATGTCCGAGTTCTCCGCCCATGCTGCTCCTACCTCTCTTCTTCACCACCTTTCTTCCGGTATATGTGCTAATGAAGTTTCAATTTGTTCAGAGAATTAA

Protein sequence

MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKWTDTCRLQIQAMSEFSAHAAPTSLLHHLSSGICANEVSICSEN
Homology
BLAST of Cp4.1LG04g08940 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (520), Expect = 2.46e-66
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0

Query: 1   MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60
           MGGE+MGGCVFDGSISM DFLIERRPYHRNCGCALHHR KNGGCPHALN+SVSFLKARKW
Sbjct: 1   MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHHRLKNGGCPHALNSSVSFLKARKW 60

Query: 61  TDTCRLQIQAMSEFSAHAAPTSLLHHLSSGICANEVSICSEN 102
           TDTCRLQIQAMSEFSAHAAPTSLLH LSSGICA+EVSICSEN
Sbjct: 61  TDTCRLQIQAMSEFSAHAAPTSLLHDLSSGICADEVSICSEN 102

BLAST of Cp4.1LG04g08940 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193 bits (491), Expect = 5.24e-62
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60
          MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60

Query: 61 TDTCRLQIQAMSEFSAHAAPTSLLHHLSSG 90
          TDTCRLQIQAMSEFSAHAAPTSLLHHLSSG
Sbjct: 61 TDTCRLQIQAMSEFSAHAAPTSLLHHLSSG 90

BLAST of Cp4.1LG04g08940 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191 bits (485), Expect = 8.94e-61
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60
          MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKW 60

Query: 61 TDTCRLQIQAMSEFSAHAAPTSLLHHLSS 89
          TDTCRLQIQAMSEFSAHAAPTSLLHHLSS
Sbjct: 61 TDTCRLQIQAMSEFSAHAAPTSLLHHLSS 89

BLAST of Cp4.1LG04g08940 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 6.98e-18
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 3   GEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHH-RAKNGG-CPHA--LNTSVSFLKAR 62
           G V+G CVFDGS+SM DFLIERRPYHRNCGCALH  R +NG  C HA  L  SVSFLK +
Sbjct: 62  GGVVGSCVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSFLKTQ 121

Query: 63  KWTDTCRLQIQAMSEFSA 76
           K   T    +++ S+ S+
Sbjct: 122 KCPITSLQILRSSSKVSS 139

BLAST of Cp4.1LG04g08940 vs. NCBI nr
Match: KGN65216.1 (hypothetical protein Csa_019753 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 4.77e-15
Identity = 50/91 (54.95%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 4  EVMGGC---VFDGSISMHDFLIERRPYHRNCGCALHH-RAKNGG-CPHALNT--SVSFLK 63
          E MGG    VFDGS+S+  FLIERRPYHRNCGCALH  R +NG  C HAL +  SVSFLK
Sbjct: 2  EKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 61

Query: 64 ARKWTDTCRLQIQAMS--EFSAHAAPTSLLH 85
           +K   T  LQI   S  +F    +P   LH
Sbjct: 62 TQKCPKTS-LQILPSSSRQFVNSESPPPPLH 91

BLAST of Cp4.1LG04g08940 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.38e-18
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 3   GEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHH-RAKNGG-CPHA--LNTSVSFLKAR 62
           G V+G CVFDGS+SM DFLIERRPYHRNCGCALH  R +NG  C HA  L  SVSFLK +
Sbjct: 62  GGVVGSCVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSFLKTQ 121

Query: 63  KWTDTCRLQIQAMSEFSA 76
           K   T    +++ S+ S+
Sbjct: 122 KCPITSLQILRSSSKVSS 139

BLAST of Cp4.1LG04g08940 vs. ExPASy TrEMBL
Match: A0A0A0LZ02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.31e-15
Identity = 50/91 (54.95%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 4  EVMGGC---VFDGSISMHDFLIERRPYHRNCGCALHH-RAKNGG-CPHALNT--SVSFLK 63
          E MGG    VFDGS+S+  FLIERRPYHRNCGCALH  R +NG  C HAL +  SVSFLK
Sbjct: 2  EKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 61

Query: 64 ARKWTDTCRLQIQAMS--EFSAHAAPTSLLH 85
           +K   T  LQI   S  +F    +P   LH
Sbjct: 62 TQKCPKTS-LQILPSSSRQFVNSESPPPPLH 91

BLAST of Cp4.1LG04g08940 vs. ExPASy TrEMBL
Match: I1MTY9 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G104700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.39e-15
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 4  EVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTS--VSFLKARKWT 63
          ++M  CVF+GSIS+HD  IERRPYH+NCGCALH+   +G C  A      VSF K   WT
Sbjct: 7  QMMFQCVFEGSISLHDMEIERRPYHKNCGCALHN-LNDGICSKACPQQRYVSFSKKTSWT 66

Query: 64 DTCRLQIQAMSEFSAHAAPTSLLHH 86
          D C       S+FS+H +  S   H
Sbjct: 67 DYC--MHTTASKFSSHLSFLSKTRH 88

BLAST of Cp4.1LG04g08940 vs. ExPASy TrEMBL
Match: A0A445G4Y6 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_045448 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.39e-15
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 4  EVMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTS--VSFLKARKWT 63
          ++M  CVF+GSIS+HD  IERRPYH+NCGCALH+   +G C  A      VSF K   WT
Sbjct: 7  QMMFQCVFEGSISLHDMEIERRPYHKNCGCALHN-LNDGICSKACPQQRYVSFSKKTSWT 66

Query: 64 DTCRLQIQAMSEFSAHAAPTSLLHH 86
          D C       S+FS+H +  S   H
Sbjct: 67 DYC--MHTTASKFSSHQSFLSKTRH 88

BLAST of Cp4.1LG04g08940 vs. ExPASy TrEMBL
Match: A0A6J5Y6G4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46999 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.53e-15
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 5  VMGGCVFDGSISMHDFLIERRPYHRNCGCALHHRAKNGGCPHALNTSVSFLKARKWTD-T 64
          +M  CVF+GS+SM D  IERRPYH+NC CALH ++K G C +A   ++SF K   W+D +
Sbjct: 9  MMFQCVFEGSLSMRDTEIERRPYHKNCSCALH-KSKGGACSNACQRNISFPKKHSWSDGS 68

Query: 65 CRLQIQAMSEFSA 76
            +Q+ A S+FS+
Sbjct: 69 LCMQVAASSKFSS 80

BLAST of Cp4.1LG04g08940 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-10
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 10 VFDGSISMHDFLIERRPYHRNCGCALHHRAKNGG----CPHALNTSVSFLKARKWTDTCR 69
          +F+G IS  D  I+RRPYH+NCGCALH R++ GG    C H  +  V F   R W++   
Sbjct: 13 IFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRSWSEGNS 72

Query: 70 LQIQAMSEFSA 77
          L +   S  S+
Sbjct: 73 LALHLASSSSS 83

BLAST of Cp4.1LG04g08940 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-09
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 0

Query: 10  VFDGSISMHDFLIERRPYHRNCGCALHHRAKNGG----------C-PHALNTSVSFLKAR 69
           +F+G IS  D  IERRPYH+NCGCALH ++   G          C  H  + S+SF   R
Sbjct: 10  IFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSESISFPIRR 69

Query: 70  KWTDTCRLQIQAMSEFSAHAAPTSLLHHLSSGICANEVS 98
            W++     I AM+ FS+ ++ ++L    SS   +N  S
Sbjct: 70  SWSEG---NIMAMNLFSSSSSSSNLQSLSSSSSLSNLAS 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6587851.12.46e-6694.12hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023531633.15.24e-62100.00uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023531631.18.94e-61100.00uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAA0050036.16.98e-1858.97hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK0364... [more]
KGN65216.14.77e-1554.95hypothetical protein Csa_019753 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7U7813.38e-1858.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LZ022.31e-1554.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1[more]
I1MTY92.39e-1548.24Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G104700 PE=4 SV=1[more]
A0A445G4Y62.39e-1548.24Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_045448 PE=4 SV=1[more]
A0A6J5Y6G42.53e-1549.32Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46999 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT5G35110.13.2e-1042.25unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G46490.11.6e-0937.37unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35121:SF8SUBFAMILY NOT NAMEDcoord: 3..82
NoneNo IPR availablePANTHERPTHR35121HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATEDcoord: 3..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g08940.1Cp4.1LG04g08940.1mRNA