Cp4.1LG04g08520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g08520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	GATA transcription factor 16-like
Location	Cp4.1LG04: 2775577 .. 2777406 (-)
RNA-Seq Expression	Cp4.1LG04g08520
Synteny	Cp4.1LG04g08520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAGCATGCAGGGCTAATCTAGAAGATACGTACGAGAGAGAGAGAGACGTGGAGAGAGTGAAAAATAGAGAGGGAGGTATCGTGTCAGCAAAGGAAAAGGGTTCAGCTCCTGCTGTTCCTTAAACCCCATTTGTTTGGGCGTTTATTTCTGGGTTTAGGGTTTTGGCAATGCCGTCTAGGGTTTTTCCTCCCTTTTCTTATCCCTTTTCTTATCCCTTCTCTCTCCCTCTCTTCCTCTGTCGGTTCCTCTCCCTCTTCCTCTTCTCTTTTTCCACTCACTAATGATCATCTTCACTTTTCTTCACAAAACCTCCAAATGGGTATGATGGATGTCACACAAAAGGTCGGTTTCACACCGCTTCATACTAATCTAATCCCCTCTTCTTTGTTTTCCCCAACTGATGGAGGAATCATTACATTAATTCCACTTCTGTTCTTCAGGGGCTGTTGCCGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGGTTTCTCTCATCGCATTTTTCTTCTTTTTCCCTCTGTTTTCATCTTCTGTTTCATCTTCAGCTTCTTCTTAGTATGTCAGATTCATGGTTTCTTTCTGATTATTCATTTCTTCTGGGTTTTTTTCGTATCCAATATCGTTTTAGCTTTCTGTTCTGTTTCTGGTTATGTTCTTCTTAATTCTTGAAACTGGGTTTCTACTCTGTTCATGTACCTGTTCTTCTTCCAGCATTTCTGCTCTGTTTCAGATTCATGGTTTGTTTTTTGTTTTTTTATTTTTATTTTTAGCTTCTGATATGGATTCATGTTCCTTTTTGGTTCTATTTGTATTGGGTTTCTCCACTATCTATCAAACCTATCTACCCATTTCCACAACTGTTCTTAATGTTCATCTATTTTCTCATCAATACATTCATAGTTCTCTCTAGTTTTTTTCTACTTATCCCTCGTATTTAGCTTCTAAAGAATGAAAAACTCTAAAAGAAAACCCGCTGTTCCCCCCTATATGGGATTTTTGCAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGGAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGCCGCAGTGTCAGCCACCACTTCTTCTTCTTCCACTGGCACAACGGCCATCAATACCACCACCACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCATTCAGGGAGGAGGTGGTGGTGGTGCAGAATGTGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGAGGAAGAGGAGGAGGAAGAAGGTATAGAAGTAGAAGAGTTCTAACAAATACTAATTACACCAACAACAGCAGCACCTCATTTCCTGTGCTTGTTTGTCACTTTCTTTTGGATGAATCTCTAAATTAATGAGATGGAAGAAACCCAAAATAGTAGGAATTGGGTTTGTTTTCAAAAGGATAGTTCTAGGAAAATCAAGAAGGGAGATTATTATTAGGAAATTCAAGATCATATTTTGTGTAGTTGTAGTATCCTTCTGTTCTTTAGTTCTATGTCTGTAAATATACGTTGATCTTGAAGAACCACCACAGGTATTGTTTTCAAGCTTTCAATCATAGATTACTCGCATTTAACCTTTATACTTTCATAAATACAACATTCTAATTTCATTCATA

mRNA sequence

TGTGAGCATGCAGGGCTAATCTAGAAGATACGTACGAGAGAGAGAGAGACGTGGAGAGAGTGAAAAATAGAGAGGGAGGTATCGTGTCAGCAAAGGAAAAGGGTTCAGCTCCTGCTGTTCCTTAAACCCCATTTGTTTGGGCGTTTATTTCTGGGTTTAGGGTTTTGGCAATGCCGTCTAGGGTTTTTCCTCCCTTTTCTTATCCCTTTTCTTATCCCTTCTCTCTCCCTCTCTTCCTCTGTCGGTTCCTCTCCCTCTTCCTCTTCTCTTTTTCCACTCACTAATGATCATCTTCACTTTTCTTCACAAAACCTCCAAATGGGTATGATGGATGTCACACAAAAGGGGCTGTTGCCGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGGAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGCCGCAGTGTCAGCCACCACTTCTTCTTCTTCCACTGGCACAACGGCCATCAATACCACCACCACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCATTCAGGGAGGAGGTGGTGGTGGTGCAGAATGTGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGAGGAAGAGGAGGAGGAAGAAGGTATAGAAGTAGAAGAGTTCTAACAAATACTAATTACACCAACAACAGCAGCACCTCATTTCCTGTGCTTGTTTGTCACTTTCTTTTGGATGAATCTCTAAATTAATGAGATGGAAGAAACCCAAAATAGTAGGAATTGGGTTTGTTTTCAAAAGGATAGTTCTAGGAAAATCAAGAAGGGAGATTATTATTAGGAAATTCAAGATCATATTTTGTGTAGTTGTAGTATCCTTCTGTTCTTTAGTTCTATGTCTGTAAATATACGTTGATCTTGAAGAACCACCACAGGTATTGTTTTCAAGCTTTCAATCATAGATTACTCGCATTTAACCTTTATACTTTCATAAATACAACATTCTAATTTCATTCATA

Coding sequence (CDS)

ATGGGTATGATGGATGTCACACAAAAGGGGCTGTTGCCGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGGAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGCCGCAGTGTCAGCCACCACTTCTTCTTCTTCCACTGGCACAACGGCCATCAATACCACCACCACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCATTCAGGGAGGAGGTGGTGGTGGTGCAGAATGTGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGA

Protein sequence

MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA

Homology

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BLAST of Cp4.1LG04g08520 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 61/148 (41.22%), Postives = 79/148 (53.38%), Query Frame = 0


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR--ISTNRGYVRKKERPHSSTAMAA 82
           K C  C T+KTPLWRGGPAGPKSLCNACGIR RK+R  + +NR   +KK+  + +     
Sbjct: 41  KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKF-- 100

Query: 83  VSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNVSS 142
                                      GD         SL+ R +M    EV++ ++ + 
Sbjct: 101 ---------------------------GD---------SLKQR-LMELGREVMMQRSTAE 149

Query: 143 VQKQGKLGEEEQAAVLLMALS-CGSVFA 168
            Q++ KLGEEEQAAVLLMALS   SV+A
Sbjct: 161 NQRRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-16
Identity = 67/154 (43.51%), Postives = 80/154 (51.95%), Query Frame = 0


Query: 15  TQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPHS 74
           T + D+  K C DC T+KTPLWRGGP GPKSLCNACGIR RK+R                
Sbjct: 29  TSVNDK-KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKR---------------- 88

Query: 75  STAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVV 134
                           G T  N     +S GG   G    GE  SL+  +M       + 
Sbjct: 89  ---------------RGGTEDNKKLKKSSSGG---GNRKFGE--SLKQSLM------DLG 139

Query: 135 VQNVSSVQKQ-GKLGEEEQAAVLLMALSCGSVFA 168
           ++  S+V+KQ  KLGEEEQAAVLLMALS GSV+A
Sbjct: 149 IRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 62/158 (39.24%), Postives = 82/158 (51.90%), Query Frame = 0


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIST--NRGYVRKKERPHSSTAM 80
           T + CVDC T +TPLWRGGPAGPKSLCNACGI+ RK+R +    R   +KK R  +    
Sbjct: 40  TKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNND 99

Query: 81  AAVSATTSSS------STGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEV 140
             +    +          G   I+      +   S     + G  + L +   +P     
Sbjct: 100 LNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVP----- 159

Query: 141 VVVQNVSSVQKQ---GKLGEEEQAAVLLMALSCGSVFA 168
             V   S+V+K+    KLGEEE+AAVLLMALSC SV+A
Sbjct: 160 --VMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 56/154 (36.36%), Postives = 70/154 (45.45%), Query Frame = 0


Query: 14  RTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPH 73
           R + +  T +CC +C TTKTP+WRGGP GPKSLCNACGIR RK+R S   G      R H
Sbjct: 17  RMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI--HIIRSH 76

Query: 74  SSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVV 133
            S A   ++  +SS                 GG                           
Sbjct: 77  KSLASKKINLLSSSH----------------GG--------------------------- 120

Query: 134 VVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 168
                 +V+K+  L EEEQAA+ L+ LSC SV A
Sbjct: 137 -----VAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-11
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR 59
           + C DCNTTKTPLWR GP GPKSLCNACGIR RK R
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211

[Close]

BLAST of Cp4.1LG04g08520 vs. NCBI nr
Match: XP_023530140.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320 bits (819), Expect = 7.78e-110
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL 120
           TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL
Sbjct: 61  TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL 120

Query: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167

[Close]

BLAST of Cp4.1LG04g08520 vs. NCBI nr
Match: KAG6588601.1 (GATA transcription factor 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297 bits (760), Expect = 6.71e-101
Identity = 160/167 (95.81%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDVTQKGLL RTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL 120
           TNRGYVRKKERPHSSTAM AVSATTSSSS GTTAINTTT   SGGGSGDGEEDLGECRSL
Sbjct: 61  TNRGYVRKKERPHSSTAMGAVSATTSSSS-GTTAINTTT---SGGGSGDGEEDLGECRSL 120

Query: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           RMRVMMPFREEVVVVQN SSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 RMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163

[Close]

BLAST of Cp4.1LG04g08520 vs. NCBI nr
Match: XP_022931670.1 (GATA transcription factor 16-like [Cucurbita moschata])

HSP 1 Score: 293 bits (749), Expect = 3.19e-99
Identity = 158/167 (94.61%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMM+VTQKGLL RTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL 120
           TNRGYVRKKERP+SSTAM AVSATTSSSS GTTAINTTT   SGGGSGDGEEDLGECRSL
Sbjct: 61  TNRGYVRKKERPNSSTAMGAVSATTSSSS-GTTAINTTT---SGGGSGDGEEDLGECRSL 120

Query: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           RMRVMMPFREEVVVVQN SSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 RMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163

[Close]

BLAST of Cp4.1LG04g08520 vs. NCBI nr
Match: XP_022989484.1 (GATA transcription factor 16-like [Cucurbita maxima])

HSP 1 Score: 285 bits (728), Expect = 4.12e-96
Identity = 152/167 (91.02%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDVTQKGL PRTQLQDQT KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMDVTQKGLSPRTQLQDQTKKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL 120
           TNRGYVRK+ERPHSST       T+SSSS+GTTAINTTT   SGGGSGDGEEDLGECRSL
Sbjct: 61  TNRGYVRKRERPHSST-------TSSSSSSGTTAINTTT---SGGGSGDGEEDLGECRSL 120

Query: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 157

[Close]

BLAST of Cp4.1LG04g08520 vs. NCBI nr
Match: XP_038880207.1 (GATA transcription factor 17-like [Benincasa hispida])

HSP 1 Score: 189 bits (481), Expect = 4.29e-58
Identity = 121/177 (68.36%), Postives = 131/177 (74.01%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMD+ QKGLL    L D   KCCVDC TTKTPLWRGGP GPKSLCNACGIRFRKRRIS
Sbjct: 21  MGMMDLRQKGLL----LAD--TKCCVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKRRIS 80

Query: 61  T---NRGYVRKKERPHS--STAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLG 120
           T   NRGY RK+ER H+  ST    VSATTSS+        TTTTTTSG G GDG+E+LG
Sbjct: 81  TIGTNRGYDRKRERVHNNGSTITTTVSATTSSTG-------TTTTTTSGSGDGDGDENLG 140

Query: 121 ECRSLRMRVMMPFREEVVVVQNV-SSVQKQG-----KLGEEE-QAAVLLMALSCGSV 165
           EC SL MR+MM   EEV+VVQN+ SSV+KQ      KLGEEE QAAV LMALSCGSV
Sbjct: 141 ECGSLGMRLMMALEEEVMVVQNLPSSVKKQRFQRERKLGEEEKQAAVSLMALSCGSV 184

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy TrEMBL
Match: A0A6J1F048 (GATA transcription factor 16-like OS=Cucurbita moschata OX=3662 GN=LOC111437809 PE=4 SV=1)

HSP 1 Score: 293 bits (749), Expect = 1.54e-99
Identity = 158/167 (94.61%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMM+VTQKGLL RTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMEVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL 120
           TNRGYVRKKERP+SSTAM AVSATTSSSS GTTAINTTT   SGGGSGDGEEDLGECRSL
Sbjct: 61  TNRGYVRKKERPNSSTAMGAVSATTSSSS-GTTAINTTT---SGGGSGDGEEDLGECRSL 120

Query: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           RMRVMMPFREEVVVVQN SSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 RMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA 163

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy TrEMBL
Match: A0A6J1JPG4 (GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111486528 PE=4 SV=1)

HSP 1 Score: 285 bits (728), Expect = 2.00e-96
Identity = 152/167 (91.02%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDVTQKGL PRTQLQDQT KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS
Sbjct: 1   MGMMDVTQKGLSPRTQLQDQTKKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60

Query: 61  TNRGYVRKKERPHSSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSL 120
           TNRGYVRK+ERPHSST       T+SSSS+GTTAINTTT   SGGGSGDGEEDLGECRSL
Sbjct: 61  TNRGYVRKRERPHSST-------TSSSSSSGTTAINTTT---SGGGSGDGEEDLGECRSL 120

Query: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA
Sbjct: 121 RMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 157

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy TrEMBL
Match: A0A6J1C1I3 (GATA transcription factor 16-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 179 bits (454), Expect = 1.39e-54
Identity = 109/173 (63.01%), Postives = 127/173 (73.41%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDV ++    + +++D T K CVDC TTKTPLWRGGPAGPKSLCNACGIRFRKRR+S
Sbjct: 1   MGMMDVLRRK--NKERVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVS 60

Query: 61  T---NRGYVRKKERPHS--STAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEE-DL 120
           T   NRG  RK+E+ HS   +  AA+SATTSSS+T   A +      +GG  G+ EE DL
Sbjct: 61  TIGTNRGCDRKREKAHSHGGSTTAAMSATTSSSATAADAKSN-----NGGADGEEEEEDL 120

Query: 121 GECRSLRMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           GEC SLRMR+MM   EEVVV QN+S  +   KLGEEEQAAV LMALSCGSVFA
Sbjct: 121 GECGSLRMRLMMALGEEVVVQQNISKQRPPRKLGEEEQAAVSLMALSCGSVFA 166

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy TrEMBL
Match: A0A6J1C1Y1 (GATA transcription factor 16-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 5.80e-54
Identity = 111/174 (63.79%), Postives = 127/174 (72.99%), Query Frame = 0


Query: 1   MGMMDVTQ-KGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRI 60
           MGMMDV + K  + R  ++D T K CVDC TTKTPLWRGGPAGPKSLCNACGIRFRKRR+
Sbjct: 1   MGMMDVLRRKNKVER--VEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRV 60

Query: 61  ST---NRGYVRKKERPHS--STAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEE-D 120
           ST   NRG  RK+E+ HS   +  AA+SATTSSS+T   A +      +GG  G+ EE D
Sbjct: 61  STIGTNRGCDRKREKAHSHGGSTTAAMSATTSSSATAADAKSN-----NGGADGEEEEED 120

Query: 121 LGECRSLRMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           LGEC SLRMR+MM   EEVVV QN+S  +   KLGEEEQAAV LMALSCGSVFA
Sbjct: 121 LGECGSLRMRLMMALGEEVVVQQNISKQRPPRKLGEEEQAAVSLMALSCGSVFA 167

[Close]

BLAST of Cp4.1LG04g08520 vs. ExPASy TrEMBL
Match: A0A6J1C5A4 (GATA transcription factor 17-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1)

HSP 1 Score: 179 bits (454), Expect = 7.45e-54
Identity = 109/173 (63.01%), Postives = 127/173 (73.41%), Query Frame = 0


Query: 1   MGMMDVTQKGLLPRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIS 60
           MGMMDV ++    + +++D T K CVDC TTKTPLWRGGPAGPKSLCNACGIRFRKRR+S
Sbjct: 55  MGMMDVLRRK--NKERVEDDTKKYCVDCKTTKTPLWRGGPAGPKSLCNACGIRFRKRRVS 114

Query: 61  T---NRGYVRKKERPHS--STAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEE-DL 120
           T   NRG  RK+E+ HS   +  AA+SATTSSS+T   A +      +GG  G+ EE DL
Sbjct: 115 TIGTNRGCDRKREKAHSHGGSTTAAMSATTSSSATAADAKSN-----NGGADGEEEEEDL 174

Query: 121 GECRSLRMRVMMPFREEVVVVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 167
           GEC SLRMR+MM   EEVVV QN+S  +   KLGEEEQAAV LMALSCGSVFA
Sbjct: 175 GECGSLRMRLMMALGEEVVVQQNISKQRPPRKLGEEEQAAVSLMALSCGSVFA 220

[Close]

BLAST of Cp4.1LG04g08520 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-17
Identity = 61/148 (41.22%), Postives = 79/148 (53.38%), Query Frame = 0


Query: 23  KCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR--ISTNRGYVRKKERPHSSTAMAA 82
           K C  C T+KTPLWRGGPAGPKSLCNACGIR RK+R  + +NR   +KK+  + +     
Sbjct: 41  KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKF-- 100

Query: 83  VSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNVSS 142
                                      GD         SL+ R +M    EV++ ++ + 
Sbjct: 101 ---------------------------GD---------SLKQR-LMELGREVMMQRSTAE 149

Query: 143 VQKQGKLGEEEQAAVLLMALS-CGSVFA 168
            Q++ KLGEEEQAAVLLMALS   SV+A
Sbjct: 161 NQRRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Cp4.1LG04g08520 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-17
Identity = 67/154 (43.51%), Postives = 80/154 (51.95%), Query Frame = 0


Query: 15  TQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPHS 74
           T + D+  K C DC T+KTPLWRGGP GPKSLCNACGIR RK+R                
Sbjct: 29  TSVNDK-KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKR---------------- 88

Query: 75  STAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVV 134
                           G T  N     +S GG   G    GE  SL+  +M       + 
Sbjct: 89  ---------------RGGTEDNKKLKKSSSGG---GNRKFGE--SLKQSLM------DLG 139

Query: 135 VQNVSSVQKQ-GKLGEEEQAAVLLMALSCGSVFA 168
           ++  S+V+KQ  KLGEEEQAAVLLMALS GSV+A
Sbjct: 149 IRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Cp4.1LG04g08520 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 62/158 (39.24%), Postives = 82/158 (51.90%), Query Frame = 0


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRIST--NRGYVRKKERPHSSTAM 80
           T + CVDC T +TPLWRGGPAGPKSLCNACGI+ RK+R +    R   +KK R  +    
Sbjct: 40  TKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNND 99

Query: 81  AAVSATTSSS------STGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEV 140
             +    +          G   I+      +   S     + G  + L +   +P     
Sbjct: 100 LNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVP----- 159

Query: 141 VVVQNVSSVQKQ---GKLGEEEQAAVLLMALSCGSVFA 168
             V   S+V+K+    KLGEEE+AAVLLMALSC SV+A
Sbjct: 160 --VMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of Cp4.1LG04g08520 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 56/154 (36.36%), Postives = 70/154 (45.45%), Query Frame = 0


Query: 14  RTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPH 73
           R + +  T +CC +C TTKTP+WRGGP GPKSLCNACGIR RK+R S   G      R H
Sbjct: 17  RMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI--HIIRSH 76

Query: 74  SSTAMAAVSATTSSSSTGTTAINTTTTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVV 133
            S A   ++  +SS                 GG                           
Sbjct: 77  KSLASKKINLLSSSH----------------GG--------------------------- 120

Query: 134 VVQNVSSVQKQGKLGEEEQAAVLLMALSCGSVFA 168
                 +V+K+  L EEEQAA+ L+ LSC SV A
Sbjct: 137 -----VAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Cp4.1LG04g08520 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-13
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 21  TNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRR---ISTNRGYVRKKERPHSSTA 80
           T K CVDC T++TPLWRGGPAGPKSLCNACGI+ RK+R   +   +  ++ K + +++  
Sbjct: 35  TKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIKIKSKSNNNLG 94

Query: 81  MAAVSATTSSSSTGTTAI---NTTTTTTSGGGSGDGEEDL------------GECRSLRM 140
           + + +  T         I          + G  G+ +  +             +    R+
Sbjct: 95  LESRNVKTGKGEPVNVKIAKCEPGIVKIAKGEPGNVKNKIKRDPENSSSSNNNKKNVKRV 154

Query: 141 RVMMPFREEVVVVQNVSSVQKQ---GKLGEEEQAAVLLMALSCG 164
              + F  +V  ++  S+V+K+    KLGEEE+AAVLLMALSCG
Sbjct: 155 GRFLDFGFKVPAMKR-SAVEKKRLWRKLGEEERAAVLLMALSCG 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g08520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG10	3.6e-16	41.22	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9FJ10	4.8e-16	43.51	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q9LIB5	2.0e-14	39.24	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	1.9e-12	36.36	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q6YW48	3.5e-11	80.56	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]

BLAST of Cp4.1LG04g08520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530140.1	7.78e-110	100.00	GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]	[more]
KAG6588601.1	6.71e-101	95.81	GATA transcription factor 16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022931670.1	3.19e-99	94.61	GATA transcription factor 16-like [Cucurbita moschata]	[more]
XP_022989484.1	4.12e-96	91.02	GATA transcription factor 16-like [Cucurbita maxima]	[more]
XP_038880207.1	4.29e-58	68.36	GATA transcription factor 17-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG04g08520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F048	1.54e-99	94.61	GATA transcription factor 16-like OS=Cucurbita moschata OX=3662 GN=LOC111437809 ...	[more]
A0A6J1JPG4	2.00e-96	91.02	GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111486528 PE...	[more]
A0A6J1C1I3	1.39e-54	63.01	GATA transcription factor 16-like isoform X4 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1C1Y1	5.80e-54	63.79	GATA transcription factor 16-like isoform X3 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1C5A4	7.45e-54	63.01	GATA transcription factor 17-like isoform X2 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of Cp4.1LG04g08520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06740.1	2.6e-17	41.22	GATA transcription factor 15	[more]
AT5G49300.1	3.4e-17	43.51	GATA transcription factor 16	[more]
AT3G16870.1	1.4e-15	39.24	GATA transcription factor 17	[more]
AT5G26930.1	1.3e-13	36.36	GATA transcription factor 23	[more]
AT4G16141.1	3.0e-13	35.37	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 19..72 e-value: 5.4E-15 score: 65.8
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 25..58 e-value: 9.4E-18 score: 63.5
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 25..50
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 19..55 score: 12.703237
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 25..72 e-value: 3.59916E-13 score: 58.9234
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 19..87 e-value: 1.7E-16 score: 62.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..113
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 16..167
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 16..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g08520.1	Cp4.1LG04g08520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding