Cp4.1LG04g07990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g07990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	thioredoxin M3, chloroplastic-like
Location	Cp4.1LG04: 3551273 .. 3554177 (-)
RNA-Seq Expression	Cp4.1LG04g07990
Synteny	Cp4.1LG04g07990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTATCAGAAAACGTAAATTAAAAAATTAATGAAAAAAATAAAAAAATAAAAAATAAAAAAGACGCGTCAAATCTCCACTTCCCTTCCGTCTCTCTTTCTGCGGCTCTGCCCACTGATTGTTTCTACTTCGCATGCCGTTTGATTTCCGATCTCCTTTGTTTCTCTGCTCCTCCTTCTCTCTCGTCCATGGCCTCCTCCTTGCCTTTCTCCGTTCCTCAAACCCTTCCCAATTGCATTTCCTCCCATTCTAACCTCAATTCACTTTGCTTTTTCTCGCCTCCTTCCAATCTGCGTCTCCATCGCCGGATTAGGGCTCGAAATGCTTCTCTCACCCTCAACGTTCAATGCGTCAGTCAACCTAAAGGTTTTTGGTTTTTCTCATTGTTTTCGCTTTACGTTTTGTGTTGTTTTGTTTGTATGCTGTACTCGCCCGTTTGGTACGTTTCTCTAATTTTCTGCTGAAATCAATGAGTTATTGTAGGTTTTACTACGTTCTAGATGTTGATCTCACTCTTTCTGTCTTTGTGTGCGGCGGATGAGATCTTGATTATTGTGATTTTCTTATTTTAGATTTAGTACAATAAATGTGATTGTTGATGAGGATTTAAATGACTGAGCTACAAGGAGATTGACTTTGATTACATATGAGATGGTTTTCAATTTAATCTCTGATTCCGATCATATGTTTTGCCTTTTCCTCTAATTATGCTTAGTTTACGGACAGTTAATGTTGGTAATGTTCGTATTATTTCGAGATCCAATCTTAAATTTGCGGTGTGAAGGAAAGCTGGAATTGTCGCAAATTCCTGAAATAAAAAGATTTCAAGATCTGTTCAATGAATTGCGCAACACGCGTACAAATCTTAGGAAAAATTTGATTGTCTCCTCTGTGTAGTGTTTCAATATCTAAACGTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTGGTGTATTATGATGCGTATTATGATGCTTTTAACGAGAGCAATTCCGAAATTGCTACTTCATGGTAACTTTTTTTGGTAACTACGGGAAAGGAAGGGAGTAACTAATGCATTATTAGGGTTTTCAATCATGCCCTGCTTGAGGATTTGAATAGAAACAGCGCATGGATGAATATGTTTCATAGCTATCTGATGTCCATTTACTTGTGAAAACCCTACTTGTTTTGACATAGAACGAACTGCACTTAGATACAAGTTAATGTTTTTTTGTACCTGCTTAGTAAACTACACTTGCATATGATTTTTGTTGAGCTTGTCATGCATGATCACTCCTGTTATCAGCTTGAATTACTAGTTTTCAATGCAATGTTTAGAACTTTTTTTATCTGAGTTTGTTCTTCTTTTTCATAGTTACTGAAGACACTTAGCATTCCAAGTATAGAGAGTAAATCTTTGTTCTTTGTTCTGACAAAGTTAGAATGTCTTTTCTGACTCTCTGGACTACATCTTGATGAAACGGTAGTATGATTATTTTTGCTCAGTCTTCATTCATTGTGTTTCTTACTTTTATAAAGAATATATATAAATATAAGGTCTTGTTGTATGTTGCCCATCATTACACATAGACTTACCCAATTTGACATTTGTTTCTGAATGATGTTATCTGGTGATATTACTACTTCATCTCTTTTCTTGTTTCAAGTATGTATGCAGCATACTGGGTTATTTTTTTGTTTTTTTTTTTTTTAATTTTTACCTGTGGAATCAGTATCTTGTATGAATATACTATGATGATGGTCTTATGTTTTTGCATCATTGAAAGTCATCCTTTCTCCCTTGTTCAAGGGCTTCTTTATCCTATAAACTATTCTTTGTAATCCATTGGTCTCTAATAATGGTCGAACCTTACTGTATACTATGGAAATTGCTAGTTGATTAAGGGTGTTCACATATGGTATGATTAGTAGTTACTCTCTTGCAAGAACTTTAGCATTAATACTTTTGATGCTCATTTTTGTCCAGTTTTTAATTGATAAAATTGGTGTAACTATTTGGATTTCCATCTCAAGAATGCCTCTCTGAATAATCTTATATTGGCATACACAGCTGAGGTGGTTACTAAAGAGTCATGGAACAAAATGATTCTAGAGAGTGGAATCCCTGTCCTAGTTGAATTTTATGCTAGTTGGTGTGGACCATGTAGAATGGTGCATCGAGTCATCGATGAGCTAGCTGCTGATTATGAGGGGAAGCTCAAATGCTTTGTACTCAATACTGACAAAGATTTGCAAATAGCCGAAGACTATGAAATTAAGGCTGTTCCTGTGGTTATGTTGTTCAAGAATGGGGAGAAGTGTGAAAGTGTCATTGGTACCATGCCAAAAGATTTCTATATTGCTGCCATCGAAAGGGTCCTCAAGCAGTAGGATGGATGCATGGAAATCAAATGGGACATCTTTTGCAAGGTTGACCTGACCCCCTTGATTGTTCGAGCTGGTCGGATATTTTGTCGTAAAGCTTTACACTAGGCTACTAGTTCTTGAGCTGTATATAAGAATATACTTCACTGTTAAGTTTCTTACTGTAGTTAATCGCATAGCCCTCATTAACCTATGATGATGGCTACATGGCAAATCCACACTTCACTGTTATGGTCTTTAGGTGAAACTACTTGGGAGTTCTGAGCCATTTTCTTACTTAAAAATTGCTTGCATTTTTCGGTTTTTCTTTATTATTTCGATAACATTGGTGACGGAGGATTAAAATCTCTAACCTTTTGGTCGGGTATTTGTAGTTTCACTTTTCTGATGATACGTTGGATACCATCATTTGATTAAATAGGACTGAAGCATTTTGAAATATTGTTTCTAGACATTTGATGGATGATTCTGATATGGATAACTTCAGGAAGTTTTATTTTTTATCAATACTTTTTACGCCTAAGAATGTC

mRNA sequence

ACGTATCAGAAAACGTAAATTAAAAAATTAATGAAAAAAATAAAAAAATAAAAAATAAAAAAGACGCGTCAAATCTCCACTTCCCTTCCGTCTCTCTTTCTGCGGCTCTGCCCACTGATTGTTTCTACTTCGCATGCCGTTTGATTTCCGATCTCCTTTGTTTCTCTGCTCCTCCTTCTCTCTCGTCCATGGCCTCCTCCTTGCCTTTCTCCGTTCCTCAAACCCTTCCCAATTGCATTTCCTCCCATTCTAACCTCAATTCACTTTGCTTTTTCTCGCCTCCTTCCAATCTGCGTCTCCATCGCCGGATTAGGGCTCGAAATGCTTCTCTCACCCTCAACGTTCAATGCGTCAGTCAACCTAAAGCTGAGGTGGTTACTAAAGAGTCATGGAACAAAATGATTCTAGAGAGTGGAATCCCTGTCCTAGTTGAATTTTATGCTAGTTGGTGTGGACCATGTAGAATGGTGCATCGAGTCATCGATGAGCTAGCTGCTGATTATGAGGGGAAGCTCAAATGCTTTGTACTCAATACTGACAAAGATTTGCAAATAGCCGAAGACTATGAAATTAAGGCTGTTCCTGTGGTTATGTTGTTCAAGAATGGGGAGAAGTGTGAAAGTGTCATTGGTACCATGCCAAAAGATTTCTATATTGCTGCCATCGAAAGGGTCCTCAAGCAGTAGGATGGATGCATGGAAATCAAATGGGACATCTTTTGCAAGGTTGACCTGACCCCCTTGATTGTTCGAGCTGGTCGGATATTTTGTCGTAAAGCTTTACACTAGGCTACTAGTTCTTGAGCTGTATATAAGAATATACTTCACTGTTAAGTTTCTTACTGTAGTTAATCGCATAGCCCTCATTAACCTATGATGATGGCTACATGGCAAATCCACACTTCACTGTTATGGTCTTTAGGTGAAACTACTTGGGAGTTCTGAGCCATTTTCTTACTTAAAAATTGCTTGCATTTTTCGGTTTTTCTTTATTATTTCGATAACATTGGTGACGGAGGATTAAAATCTCTAACCTTTTGGTCGGGTATTTGTAGTTTCACTTTTCTGATGATACGTTGGATACCATCATTTGATTAAATAGGACTGAAGCATTTTGAAATATTGTTTCTAGACATTTGATGGATGATTCTGATATGGATAACTTCAGGAAGTTTTATTTTTTATCAATACTTTTTACGCCTAAGAATGTC

Coding sequence (CDS)

ATGGCCTCCTCCTTGCCTTTCTCCGTTCCTCAAACCCTTCCCAATTGCATTTCCTCCCATTCTAACCTCAATTCACTTTGCTTTTTCTCGCCTCCTTCCAATCTGCGTCTCCATCGCCGGATTAGGGCTCGAAATGCTTCTCTCACCCTCAACGTTCAATGCGTCAGTCAACCTAAAGCTGAGGTGGTTACTAAAGAGTCATGGAACAAAATGATTCTAGAGAGTGGAATCCCTGTCCTAGTTGAATTTTATGCTAGTTGGTGTGGACCATGTAGAATGGTGCATCGAGTCATCGATGAGCTAGCTGCTGATTATGAGGGGAAGCTCAAATGCTTTGTACTCAATACTGACAAAGATTTGCAAATAGCCGAAGACTATGAAATTAAGGCTGTTCCTGTGGTTATGTTGTTCAAGAATGGGGAGAAGTGTGAAAGTGTCATTGGTACCATGCCAAAAGATTTCTATATTGCTGCCATCGAAAGGGTCCTCAAGCAGTAG

Protein sequence

MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ

Homology

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BLAST of Cp4.1LG04g07990 vs. ExPASy Swiss-Prot
Match: Q9SEU7 (Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=2 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 7.0e-44
Identity = 89/149 (59.73%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 17  ISSHSNLNSLCFFSPPSNLRLHRR--IRARNASLTLNVQCVSQPKAEVVTKESWNKMILE 76
           ISS S L  +  FSP S     RR  + +  + L L+  CV   +A  VT+ SW   +L+
Sbjct: 23  ISSPSRLFPVTSFSPRSLRFSDRRSLLSSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLK 82

Query: 77  SGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVV 136
           S  PVLVEFY SWCGPCRMVHR+IDE+A DY GKL C++LN D DL +AE+YEIKAVPVV
Sbjct: 83  SETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVV 142

Query: 137 MLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           +LFKNGEK ES++GTMPK+FYI+AIERVL
Sbjct: 143 LLFKNGEKRESIMGTMPKEFYISAIERVL 171

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy Swiss-Prot
Match: Q7XQQ2 (Thioredoxin M3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0430800 PE=2 SV=4)

HSP 1 Score: 138.3 bits (347), Expect = 8.0e-32
Identity = 58/111 (52.25%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 52  VQCVSQPK-AEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLK 111
           V C   P+ A+ +T  SWN+ ++ S IPVL+EF+ASWCGPCRMVHR++DE+A +Y G++K
Sbjct: 58  VSCAYSPRGAKTITACSWNEYVICSDIPVLIEFWASWCGPCRMVHRIVDEIAQEYAGRIK 117

Query: 112 CFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIER 162
           C+ L+TD   Q+A  Y I+ +P V+LFK+GEK  S+ GT+PK  Y+ AIE+
Sbjct: 118 CYKLDTDDYPQVATSYSIERIPTVLLFKDGEKTHSITGTLPKAVYVRAIEK 168

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy Swiss-Prot
Match: Q7X8R5 (Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0530600 PE=2 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 56/129 (43.41%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 38  HRRIRARNASLTLNVQCV-SQPKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHR 97
           +RR   R AS+   VQ   +  +   VTK +W  +++ES +PVLV ++A+WCGPC+M+  
Sbjct: 52  NRRGGGRGASVVCAVQGQDTSIQVPEVTKSTWQSLVMESELPVLVGYWATWCGPCKMIDP 111

Query: 98  VIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYI 157
           V+ +L+ +YEGKLKC+ LNTD++  IA  Y ++++P +M+FKNGEK ++VIG +P+   I
Sbjct: 112 VVGKLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAVIGAVPESTLI 171

Query: 158 AAIERVLKQ 166
           A+IE+ +++
Sbjct: 172 ASIEKFVER 180

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy Swiss-Prot
Match: Q6H7E4 (Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0639900 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27
Identity = 49/101 (48.51%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 63  VTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQI 122
           VTK +W  +++ES +PVLVEF+ASWCGPC+M+  VI +L+ +YEGKL C+ LNTD++  I
Sbjct: 71  VTKSTWQSLVVESELPVLVEFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDI 130

Query: 123 AEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           A  + I+++P +M+FKNGEK ++VIG +P+   +++I++ +
Sbjct: 131 ATQFGIRSIPTMMIFKNGEKKDAVIGAVPESTLVSSIDKYI 171

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy Swiss-Prot
Match: P23400 (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=TRXM PE=1 SV=3)

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-27
Identity = 48/109 (44.04%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 55  VSQPKAEVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVL 114
           V + +A  V  +++  ++LES +PVLV+F+A WCGPCR++  V+DE+A +Y+ KLKC  L
Sbjct: 31  VVRAEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKL 90

Query: 115 NTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           NTD+   +A +Y I+++P +M+FK G+KCE++IG +PK   +  +E+ L
Sbjct: 91  NTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139

[Close]

BLAST of Cp4.1LG04g07990 vs. NCBI nr
Match: XP_023531830.1 (thioredoxin M3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338 bits (866), Expect = 4.54e-117
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA
Sbjct: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of Cp4.1LG04g07990 vs. NCBI nr
Match: KAG6588665.1 (Thioredoxin M3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022451.1 Thioredoxin M3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330 bits (846), Expect = 5.10e-114
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MASSLPFSVPQTLPN ISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQ KA
Sbjct: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of Cp4.1LG04g07990 vs. NCBI nr
Match: XP_022927893.1 (thioredoxin M3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 328 bits (840), Expect = 9.05e-113
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MAS LPFSVPQTLPN ISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQ KA
Sbjct: 23  MASYLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 82

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 83  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 142

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 143 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 187

[Close]

BLAST of Cp4.1LG04g07990 vs. NCBI nr
Match: XP_022988977.1 (thioredoxin M3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 327 bits (837), Expect = 1.20e-112
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MASSLPFSV QTLPN ISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQ KA
Sbjct: 1   MASSLPFSVHQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of Cp4.1LG04g07990 vs. NCBI nr
Match: XP_038887358.1 (thioredoxin M3, chloroplastic [Benincasa hispida])

HSP 1 Score: 296 bits (758), Expect = 1.34e-100
Identity = 144/165 (87.27%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MA+S  FS PQTLPN IS HSNLNSL  FSPPS+LRL+RR++ RNASLTLNVQC+SQPKA
Sbjct: 1   MAASFSFSTPQTLPNRISPHSNLNSLRLFSPPSSLRLNRRLKPRNASLTLNVQCISQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTK+SWNKMILESG  VLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD D+
Sbjct: 61  EVVTKDSWNKMILESGTTVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDM 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           QIAEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAAIERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy TrEMBL
Match: A0A6J1EMB5 (thioredoxin M3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434657 PE=4 SV=1)

HSP 1 Score: 328 bits (840), Expect = 4.38e-113
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MAS LPFSVPQTLPN ISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQ KA
Sbjct: 23  MASYLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 82

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 83  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 142

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 143 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 187

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy TrEMBL
Match: A0A6J1JEI0 (thioredoxin M3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486177 PE=4 SV=1)

HSP 1 Score: 327 bits (837), Expect = 5.82e-113
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MASSLPFSV QTLPN ISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQ KA
Sbjct: 1   MASSLPFSVHQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy TrEMBL
Match: A0A5D3C652 (Thioredoxin M3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00550 PE=4 SV=1)

HSP 1 Score: 291 bits (745), Expect = 6.21e-99
Identity = 140/165 (84.85%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MA+S+ FS PQT P+ IS +SNLNSL  FSPPSNLR++RR   RNASLTLN+QC+SQPKA
Sbjct: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD DL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           Q+AEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy TrEMBL
Match: A0A1S3C0H5 (thioredoxin M3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495242 PE=4 SV=1)

HSP 1 Score: 291 bits (745), Expect = 6.21e-99
Identity = 140/165 (84.85%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MA+S+ FS PQT P+ IS +SNLNSL  FSPPSNLR++RR   RNASLTLN+QC+SQPKA
Sbjct: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD DL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           Q+AEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of Cp4.1LG04g07990 vs. ExPASy TrEMBL
Match: A0A0A0K2M6 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G073610 PE=4 SV=1)

HSP 1 Score: 284 bits (727), Expect = 3.44e-96
Identity = 137/165 (83.03%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60
           MA+S  FS  QT P+ IS +SNLNSL  FSPPSNL  +RR+  RNASLTLN+QC+SQPKA
Sbjct: 1   MAASFSFSTSQTHPDRISPYSNLNSLRLFSPPSNLPFNRRLNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDE+AA+Y+GKLKCFVLNTD DL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDEIAAEYDGKLKCFVLNTDTDL 120

Query: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165
           QIAEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of Cp4.1LG04g07990 vs. TAIR 10
Match: AT2G15570.1 (Thioredoxin superfamily protein )

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-45
Identity = 89/149 (59.73%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 17  ISSHSNLNSLCFFSPPSNLRLHRR--IRARNASLTLNVQCVSQPKAEVVTKESWNKMILE 76
           ISS S L  +  FSP S     RR  + +  + L L+  CV   +A  VT+ SW   +L+
Sbjct: 23  ISSPSRLFPVTSFSPRSLRFSDRRSLLSSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLK 82

Query: 77  SGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVV 136
           S  PVLVEFY SWCGPCRMVHR+IDE+A DY GKL C++LN D DL +AE+YEIKAVPVV
Sbjct: 83  SETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVV 142

Query: 137 MLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           +LFKNGEK ES++GTMPK+FYI+AIERVL
Sbjct: 143 LLFKNGEKRESIMGTMPKEFYISAIERVL 171

[Close]

BLAST of Cp4.1LG04g07990 vs. TAIR 10
Match: AT2G15570.2 (Thioredoxin superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.1e-44
Identity = 89/150 (59.33%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 17  ISSHSNLNSLCFFSPPSNLRLHRR--IRARNASLTLNVQCVSQPKAEV-VTKESWNKMIL 76
           ISS S L  +  FSP S     RR  + +  + L L+  CV   +A   VT+ SW   +L
Sbjct: 23  ISSPSRLFPVTSFSPRSLRFSDRRSLLSSSASRLRLSPLCVRDSRAAAEVTQRSWEDSVL 82

Query: 77  ESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPV 136
           +S  PVLVEFY SWCGPCRMVHR+IDE+A DY GKL C++LN D DL +AE+YEIKAVPV
Sbjct: 83  KSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPV 142

Query: 137 VMLFKNGEKCESVIGTMPKDFYIAAIERVL 164
           V+LFKNGEK ES++GTMPK+FYI+AIERVL
Sbjct: 143 VLLFKNGEKRESIMGTMPKEFYISAIERVL 172

[Close]

BLAST of Cp4.1LG04g07990 vs. TAIR 10
Match: AT3G15360.1 (thioredoxin M-type 4 )

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-27
Identity = 57/134 (42.54%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 33  SNLRLHRRIR-ARNASLTLNVQCVSQPKAEV--VTKESWNKMILESGIPVLVEFYASWCG 92
           ++L  +RR R AR   +    Q  +    EV  ++   W   +LES +PVLVEF+A WCG
Sbjct: 58  ASLGANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCG 117

Query: 93  PCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGT 152
           PCRM+H ++D+LA D+ GK K + +NTD+    A  Y I++VP V++FK GEK +S+IG 
Sbjct: 118 PCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGA 177

Query: 153 MPKDFYIAAIERVL 164
           +P++     IER L
Sbjct: 178 VPRETLEKTIERFL 191

[Close]

BLAST of Cp4.1LG04g07990 vs. TAIR 10
Match: AT1G03680.1 (thioredoxin M-type 1 )

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-22
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 43  ARNASLTLNVQCVSQPKA---EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVID 102
           +R + L   V C +Q  A    VV   +W+ ++L++  PV V+F+A WCGPC+M+  +++
Sbjct: 56  SRVSRLRRGVICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVN 115

Query: 103 ELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAI 162
           ELA  Y G+ K + LNTD+       Y ++++P +M+F NGEK +++IG + KD    +I
Sbjct: 116 ELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSI 175

Query: 163 ERVL 164
            + L
Sbjct: 176 NKFL 179

[Close]

BLAST of Cp4.1LG04g07990 vs. TAIR 10
Match: AT4G03520.1 (Thioredoxin superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-22
Identity = 48/146 (32.88%), Postives = 86/146 (58.90%), Query Frame = 0


Query: 21  SNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA---EVVTKESWNKMILESGI 80
           S L      SP S   +H   + R + L   V C +Q      +VV   +W+ ++L++  
Sbjct: 43  SGLRIRLSLSPASLTSIH---QPRVSRLRRAVVCEAQETTTDIQVVNDSTWDSLVLKATG 102

Query: 81  PVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDLQIAEDYEIKAVPVVMLF 140
           PV+V+F+A WCGPC+M+  ++++LA  Y GK+K + LNTD+       Y ++++P +M+F
Sbjct: 103 PVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIF 162

Query: 141 KNGEKCESVIGTMPKDFYIAAIERVL 164
             GEK +++IG +PK    +++++ L
Sbjct: 163 VGGEKKDTIIGAVPKTTLTSSLDKFL 185

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU7	7.0e-44	59.73	Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=2 SV=2	[more]
Q7XQQ2	8.0e-32	52.25	Thioredoxin M3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0...	[more]
Q7X8R5	2.4e-28	43.41	Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0...	[more]
Q6H7E4	1.6e-27	48.51	Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0...	[more]
P23400	4.5e-27	44.04	Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=TRXM P...	[more]

BLAST of Cp4.1LG04g07990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531830.1	4.54e-117	100.00	thioredoxin M3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6588665.1	5.10e-114	98.79	Thioredoxin M3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
XP_022927893.1	9.05e-113	98.18	thioredoxin M3, chloroplastic-like [Cucurbita moschata]	[more]
XP_022988977.1	1.20e-112	98.18	thioredoxin M3, chloroplastic-like [Cucurbita maxima]	[more]
XP_038887358.1	1.34e-100	87.27	thioredoxin M3, chloroplastic [Benincasa hispida]	[more]

BLAST of Cp4.1LG04g07990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMB5	4.38e-113	98.18	thioredoxin M3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434657...	[more]
A0A6J1JEI0	5.82e-113	98.18	thioredoxin M3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486177 P...	[more]
A0A5D3C652	6.21e-99	84.85	Thioredoxin M3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00550 ...	[more]
A0A1S3C0H5	6.21e-99	84.85	thioredoxin M3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495242 PE=4 SV=1	[more]
A0A0A0K2M6	3.44e-96	83.03	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G073610...	[more]

BLAST of Cp4.1LG04g07990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15570.1	5.0e-45	59.73	Thioredoxin superfamily protein	[more]
AT2G15570.2	7.1e-44	59.33	Thioredoxin superfamily protein	[more]
AT3G15360.1	2.1e-27	42.54	thioredoxin M-type 4	[more]
AT1G03680.1	3.5e-22	36.29	thioredoxin M-type 1	[more]
AT4G03520.1	5.9e-22	32.88	Thioredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 127..138 score: 27.78 coord: 79..87 score: 61.79 coord: 87..96 score: 49.78
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 61..165 e-value: 3.4E-28 score: 99.7
None	No IPR available	PANTHER	PTHR45663:SF21	THIOREDOXIN M3, CHLOROPLASTIC	coord: 30..165
None	No IPR available	PANTHER	PTHR45663	GEO12009P1	coord: 30..165
None	No IPR available	CDD	cd02947	TRX_family	coord: 66..160 e-value: 2.34337E-29 score: 101.481
IPR005746	Thioredoxin	TIGRFAM	TIGR01068	TIGR01068	coord: 64..161 e-value: 9.7E-29 score: 97.5
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 61..159 e-value: 6.7E-24 score: 83.9
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 39..165 score: 12.237085
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 80..98
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 53..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07990.1	Cp4.1LG04g07990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0043085	positive regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008047	enzyme activator activity
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0015035	protein-disulfide reductase activity