Cp4.1LG04g07010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g07010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Glycine-rich RNA-binding protein
Location	Cp4.1LG04: 4569965 .. 4572378 (+)
RNA-Seq Expression	Cp4.1LG04g07010
Synteny	Cp4.1LG04g07010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTCTTCGATGTAGCTCGTGTAATGGCTGAAGAGGGGGAGTATCGGTGCTTTATTGGCGGCCTTTCTTGGTCAACTAGTGACAGAGGTCTTAAAGAAGCATTCGAAAAGTTTGGCCATCTTCAAGAGGCCAAGGTATCTGATTTCTCTTTTTCCCTATTTTAGCTGATTATAGTCTAAATTCTTGCTGCTGTATTACGGTTCTTTTTCTTTTTTTTGTTTAATTTTGGAATGGATGTTGCTTGATCATTGGGTCTTCCTATTTTTTCATATCTTCCTTGAAATGAAATGGTGAAAAGAACTCCTTGAGTTATGATTCTTCTATACACATTTAATGGCTATTGATTAATGTTTAAAAATAGAAATGTGAGAAATGTGAGGTTGGTGCTTGTTGCATTTGATGATAATGGATGATACCGTAAGGTCTCTGCTGCTTAAGGATGTTCCATAGTCACCCTTAGCATTTTTTGATGATGCATCATCTGTTTCGCAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGTTTTGTTACTTTTGATGAGAAGAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGGCTATTACAGTTGATAAGGCTCAGCCTAACCAAGGTTCAGGTAGAGACAACGATGGTGATCGTCCACGTGGTCGTGACAATGATCGTGATCGAAATCGAGATTTTGGTGGTGGGCGTGGATCTAACAGTAGAGATTGCTTTAAATGTGGGAAGCCAGGGCATTTTGCCCGGGAATGTCCCAGTGAAGGCGGTAGAGGAGGTAGGTATGGAGGAAGGGATGACAAATATAGTGGTGGTGGCGGCGGCGGCGGTGGTGGCAGTGGTCGTTATGGACCAGATCGAAATGGAGATAGATCTGGTGGGCGCAATAGGGATACTGGTGATCGAGGAGGTTCGGGAAGTGATCGATACAGTCGCGACCGCTCTGGGCCATATGAACGACGGAGTTCAGGTTCTGGTGGCTTTCGTTCTTGATAGAATCGTGTCTTCTCTGTTAAGGTGTGTAATTCATCTTAACTCGACTGGTTGGATTCATTATGGCTGCCTTATACTGATGACTTGAATTTATGTCCACATTAAATGCAGCTTACATGGAGGGATCTTGCTGTTATGTCTTGCAGAGTGTTCATGTTTCTTTCAACAGGTTGTCTATGTTACAGTTCAGATATCTGAAGTGCAGAACTTGGCGTTAGTATTGAGACATTTGTGTTCCTATGTGATGAATTTGGTATCTTGGTACAATGGTGTCTAATGTGTTCTTGACATATTCATTCAAATCGGGTTTTATGGTCTTTGAATGCCAATGTAGCTGCTGGATTACTTATCACAGGGAAATTGCAATAACTGCTAAAAATTTCTATTAAAGTACAACTAGGCCTGGTTTTTTATCTGGATGGGTATTGAAAGGATCGGGTTTTTGATAAGCTGCGACTAGTGATCTGTGTCCCGACCCGGAAAGTTGGAAGTGAAATCTCCATTTCAGGACGTTCTTCCCATTGTCTTGGAGGAATTTACAGGTAATTACTCTTCTTTCTGGTGCCTTCTACTAGTATGATGACCTATCTATCTATCACCTGTTGTGTTATATTGATTGTGTAAACTTTTTGGCAGCATTGTTCCTTTTTATGATCTTTTTGGGTGCATAATACCGTTTCTTGTTAACTTAAAACATACCAAAGCCTTTGGGATGCTCAAGCAATTTTGCAAATTAAATCATTTAATCTACAAATACGTCCTGCTGGCTTATGGTCGAGTGGTCTCGTACACGCTAAAACGCTCGGCAAGTTGTTTGGAAGCTCTTGAGAGTTCAGCAACTGCTGCCCTATCTTTTCCACTTGTGATTCCTATTTCCAGTCTGCTCTTGTTGGGGGAGTCTTTTGGTGTTCTTGCTTTGTCTCCGGATCTGCTTGTGTTCTTGGTTTTGTTTGCGGAGATTGATTCAGATGTTTGGTGTTTCTATCATGATCATCATCGTCCCTTTCACCTTCTCTGCTTGTTGGATGATCAGTCTGGTTCCTTGTCCTTAGAGGATTCTTTCTGTTCTTTTCCTTGTCTGTTATACAATTAAAGGAAACCATCTCGTGTCGACTCTCCCCCGTTTGCTATACCATGTGGAAAGTGTTATAGGTGTGACCGAGGAAGCTAAATAGCGTCCCGACACGACCCCGACTCCAACCCCGACAACAAATGTTTACAGATTATATTTCAAACTCCTTTGGCTTTTTTGCTTTTTTTTTTCATGATTTCTTGCCCATGGTTGCTTTCTTGTATCAATTGTCATATAGGATGGTTTTTATTTTTATTTTTGTTCATTTATACATTTTTTTTTCTCCATACATGAGACATTTGCGATTGTTTTGTT

mRNA sequence

ATGTGGTTCTTCGATGTAGCTCGTGTAATGGCTGAAGAGGGGGAGTATCGGTGCTTTATTGGCGGCCTTTCTTGGTCAACTAGTGACAGAGGTCTTAAAGAAGCATTCGAAAAGTTTGGCCATCTTCAAGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGTTTTGTTACTTTTGATGAGAAGAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGGCTATTACAATCGAAATGGAGATAGATCTGGTGGGCGCAATAGGGATACTGGTGATCGAGGAGGTTCGGGAAGTGATCGATACAGTCGCGACCGCTCTGGGCCATATGAACGACGGAGTTCAGGTTCTGGTGGCTTTCGTTCTTGATAGAATCGTGTCTTCTCTGTTAAGCTTACATGGAGGGATCTTGCTGTTATGTCTTGCAGAGTGTTCATGTTTCTTTCAACAGGTTGTCTATGTTACAGTTCAGATATCTGAAGTGCAGAACTTGGCGTTAGTATTGAGACATTTGTGTTCCTATGTGATGAATTTGGATCGGGTTTTTGATAAGCTGCGACTAGTGATCTGTGTCCCGACCCGGAAAGTTGGAAGTGAAATCTCCATTTCAGGACGTTCTTCCCATTGTCTTGGAGGAATTTACAGCATTGTTCCTTTTTATGATCTTTTTGGGTGCATAATACCGTTTCTTGTTAACTTAAAACATACCAAAGCCTTTGGGATGCTCAAGCAATTTTGCAAATTAAATCATTTAATCTACAAATACGTCCTGCTGGCTTATGGTCGAGTGGTCTCGTACACGCTAAAACGCTCGGCAAGTTGTTTGGAAGCTCTTGAGAGTTCAGCAACTGCTGCCCTATCTTTTCCACTTGTGATTCCTATTTCCAGTCTGCTCTTGTTGGGGGAGTCTTTTGGTGTTCTTGCTTTGTCTCCGGATCTGCTTGTGTTCTTGGTTTTGTTTGCGGAGATTGATTCAGATGTTTGGTGTTTCTATCATGATCATCATCGTCCCTTTCACCTTCTCTGCTTGTTGGATGATCAGTCTGGTTCCTTGTCCTTAGAGGATTCTTTCTGTTCTTTTCCTTGTCTGTTATACAATTAAAGGAAACCATCTCGTGTCGACTCTCCCCCGTTTGCTATACCATGTGGAAAGTGTTATAGGTGTGACCGAGGAAGCTAAATAGCGTCCCGACACGACCCCGACTCCAACCCCGACAACAAATGTTTACAGATTATATTTCAAACTCCTTTGGCTTTTTTGCTTTTTTTTTTCATGATTTCTTGCCCATGGTTGCTTTCTTGTATCAATTGTCATATAGGATGGTTTTTATTTTTATTTTTGTTCATTTATACATTTTTTTTTCTCCATACATGAGACATTTGCGATTGTTTTGTT

Coding sequence (CDS)

ATGTGGTTCTTCGATGTAGCTCGTGTAATGGCTGAAGAGGGGGAGTATCGGTGCTTTATTGGCGGCCTTTCTTGGTCAACTAGTGACAGAGGTCTTAAAGAAGCATTCGAAAAGTTTGGCCATCTTCAAGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGTTTTGTTACTTTTGATGAGAAGAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGGCTATTACAATCGAAATGGAGATAGATCTGGTGGGCGCAATAGGGATACTGGTGATCGAGGAGGTTCGGGAAGTGATCGATACAGTCGCGACCGCTCTGGGCCATATGAACGACGGAGTTCAGGTTCTGGTGGCTTTCGTTCTTGATAGAATCGTGTCTTCTCTGTTAAGCTTACATGGAGGGATCTTGCTGTTATGTCTTGCAGAGTGTTCATGTTTCTTTCAACAGGTTGTCTATGTTACAGTTCAGATATCTGAAGTGCAGAACTTGGCGTTAGTATTGAGACATTTGTGTTCCTATGTGATGAATTTGGATCGGGTTTTTGATAAGCTGCGACTAGTGATCTGTGTCCCGACCCGGAAAGTTGGAAGTGAAATCTCCATTTCAGGACGTTCTTCCCATTGTCTTGGAGGAATTTACAGCATTGTTCCTTTTTATGATCTTTTTGGGTGCATAATACCGTTTCTTGTTAACTTAAAACATACCAAAGCCTTTGGGATGCTCAAGCAATTTTGCAAATTAAATCATTTAATCTACAAATACGTCCTGCTGGCTTATGGTCGAGTGGTCTCGTACACGCTAAAACGCTCGGCAAGTTGTTTGGAAGCTCTTGAGAGTTCAGCAACTGCTGCCCTATCTTTTCCACTTGTGATTCCTATTTCCAGTCTGCTCTTGTTGGGGGAGTCTTTTGGTGTTCTTGCTTTGTCTCCGGATCTGCTTGTGTTCTTGGTTTTGTTTGCGGAGATTGATTCAGATGTTTGGTGTTTCTATCATGATCATCATCGTCCCTTTCACCTTCTCTGCTTGTTGGATGATCAGTCTGGTTCCTTGTCCTTAGAGGATTCTTTCTGTTCTTTTCCTTGTCTGTTATACAATTAA

Protein sequence

MWFFDVARVMAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKAMNGMDLDGRAITIEMEIDLVGAIGILVIEEVREVIDTVATALGHMNDGVQVLVAFVLDRIVSSLLSLHGGILLLCLAECSCFFQQVVYVTVQISEVQNLALVLRHLCSYVMNLDRVFDKLRLVICVPTRKVGSEISISGRSSHCLGGIYSIVPFYDLFGCIIPFLVNLKHTKAFGMLKQFCKLNHLIYKYVLLAYGRVVSYTLKRSASCLEALESSATAALSFPLVIPISSLLLLGESFGVLALSPDLLVFLVLFAEIDSDVWCFYHDHHRPFHLLCLLDDQSGSLSLEDSFCSFPCLLYN

Homology

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.9e-34
Identity = 66/81 (81.48%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+E+ EYRCFIGGL+W+TSDRGL++AFEK+GHL EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1  MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          MDEAI AMNGMDLDGR IT++
Sbjct: 61 MDEAIAAMNGMDLDGRTITVD 81

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.7e-22
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T +R L+ AF +FG L ++K++ D+ +GRSRGFGFVTF ++K+M +AI
Sbjct: 7  EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-21
Identity = 43/75 (57.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T DR L+ AF ++G + ++K++ D+ +GRSRGFGFVTF ++K+M +AI
Sbjct: 7  EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-21
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T DR L+ AF ++G + ++K++ D+ +GRSRGFGFVTF ++KAM +AI
Sbjct: 7  EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-21
Identity = 43/77 (55.84%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 13 EGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 72
          E EYRCF+GGL+W+T+D  L++AF +FG + ++K++ D+ +GRSRGFGFVTF ++K+M +
Sbjct: 3  EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRD 62

Query: 73 AIKAMNGMDLDGRAITI 90
          AI+ MNG +LDGR IT+
Sbjct: 63 AIEGMNGQELDGRNITV 79

[Close]

BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: KAG6588784.1 (Beta-xylosidase/alpha-L-arabinofuranosidase 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (652), Expect = 7.24e-73
Identity = 148/206 (71.84%), Postives = 148/206 (71.84%), Query Frame = 0


Query: 7   ARVMAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDE 66
           ARVMAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDE
Sbjct: 784 ARVMAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDE 843

Query: 67  KKAMDEAIKAMNGMDLDGRAIT-------------------------------------- 126
           KKAMDEAIKAMNGMDLDGRAIT                                      
Sbjct: 844 KKAMDEAIKAMNGMDLDGRAITVDKAQPNQGSVEIALNVGSQGILPGNVPVKAVEEVGME 903

Query: 127 -------------------IEMEIDLVGAIGILVIEEVREVIDTVATALGHMNDGVQVLV 155
                              IEMEIDLVGAIGILVIEEVREVIDTVATALGHMNDGVQVLV
Sbjct: 904 GGMTNIVAAAAVAVVVMDQIEMEIDLVGAIGILVIEEVREVIDTVATALGHMNDGVQVLV 963

[Close]

BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: KAA0031507.1 (glycine-rich RNA-binding protein RZ1A [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 3.01e-53
Identity = 118/212 (55.66%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 10  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
           MA+E EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70  MDEAIKAMNGMDLDGRAITI---------------------------------------- 129
           MDEAIKAMNGMDLDGR+IT+                                        
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQVEIALNVGNLDILLGNVPVKVVEEVGMEVGMTN 120

Query: 130 ------------------EMEIDLVGAIGILVIEEVREVIDTVATALGHMNDGVQVLVAF 157
                             EMEIDLVGAIG+LVIEEVREVID   TAL HM+D   VLV F
Sbjct: 121 MVVVAAVVVAAVVDMVRTEMEIDLVGAIGVLVIEEVREVIDIAVTALVHMSD--VVLVVF 180

[Close]

BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: KAG6571695.1 (F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (461), Expect = 2.04e-47
Identity = 113/194 (58.25%), Postives = 123/194 (63.40%), Query Frame = 0


Query: 7   ARVMAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDE 66
           A +MAEE EYRCFIGGLSWSTSDRGLK+AFEKFGHL EAKVVVDKFSGRSRGFGFVTFDE
Sbjct: 473 ACIMAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDE 532

Query: 67  KKAMDEAIKAMNGMDLDGRAIT-------------------------------------- 126
           KKAM+EAIK MNG+DLDGR IT                                      
Sbjct: 533 KKAMEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGNVPVKVVEEVDME 592

Query: 127 ------------------IEMEIDLVGAIGIL-VIEEVREVIDTVATALGHMNDGVQVLV 143
                             IEMEIDLVGAIG++ VIEEV+E+ID V TALGHM+D   VLV
Sbjct: 593 VGMTDMVVVVVAVVDMVQIEMEIDLVGAIGVVPVIEEVQEMIDIVVTALGHMSD--VVLV 652

[Close]

BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: KAF9869153.1 (hypothetical protein H0E87_027466 [Populus deltoides])

HSP 1 Score: 167 bits (423), Expect = 1.13e-46
Identity = 96/155 (61.94%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 10  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
           M+EE EYRCFIGGLSWSTSDRGLKE FEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEELEYRCFIGGLSWSTSDRGLKETFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70  MDEAIKAMNGMDLDGRAITIE------------------------MEIDLVGAIGILVIE 129
           M++AI+ MNGMDLDGR IT++                        MEIDLVG IG++V+ 
Sbjct: 61  MEDAIEGMNGMDLDGRTITVDKAQPQQGSSRDLDVVVVVAMALIGMEIDLVGVIGMVVVV 120

Query: 130 EVREVIDTVATALGHMNDGVQVLVAFVLDRIVSSL 140
           EV EVID + T    M+    VL  FV DR+ S L
Sbjct: 121 EVLEVIDIIVTVQDPMS---VVLQGFVQDRMTSYL 152

[Close]

BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: TQD86209.1 (hypothetical protein C1H46_028226 [Malus baccata])

HSP 1 Score: 164 bits (415), Expect = 2.53e-45
Identity = 101/171 (59.06%), Postives = 111/171 (64.91%), Query Frame = 0


Query: 10  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
           M+EE EYRCFIGGL+WSTSDR L+EAFEKFG L EAKVVVDKFSGRSRGFGFVTFD+KKA
Sbjct: 1   MSEELEYRCFIGGLAWSTSDRSLREAFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDDKKA 60

Query: 70  MDEAIKAMNGMDLDGRAIT----------------------------------------I 129
           M+EAI+ MNG+DLDGR IT                                        I
Sbjct: 61  MEEAIEEMNGLDLDGRTITVDKAQPHQGGGEEGVEGMVVGMIGMIGMVAAAVVVVVMDLI 120

Query: 130 EMEID-LVGAIGILVIEEVREVIDTVATALGHMNDGVQVLVAFVLDRIVSS 139
           EME D LVGA GILV+ EV EVIDTV  ALGHMN GVQ   A   DRI++S
Sbjct: 121 EMETDHLVGAAGILVVVEVLEVIDTVVIALGHMNVGVQE--ASDQDRIIAS 169

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy TrEMBL
Match: A0A5A7SPV0 (Glycine-rich RNA-binding protein RZ1A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002700 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 1.46e-53
Identity = 118/212 (55.66%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 10  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
           MA+E EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70  MDEAIKAMNGMDLDGRAITI---------------------------------------- 129
           MDEAIKAMNGMDLDGR+IT+                                        
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQVEIALNVGNLDILLGNVPVKVVEEVGMEVGMTN 120

Query: 130 ------------------EMEIDLVGAIGILVIEEVREVIDTVATALGHMNDGVQVLVAF 157
                             EMEIDLVGAIG+LVIEEVREVID   TAL HM+D   VLV F
Sbjct: 121 MVVVAAVVVAAVVDMVRTEMEIDLVGAIGVLVIEEVREVIDIAVTALVHMSD--VVLVVF 180

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy TrEMBL
Match: A0A540LIP9 (RRM domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028226 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 1.23e-45
Identity = 101/171 (59.06%), Postives = 111/171 (64.91%), Query Frame = 0


Query: 10  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
           M+EE EYRCFIGGL+WSTSDR L+EAFEKFG L EAKVVVDKFSGRSRGFGFVTFD+KKA
Sbjct: 1   MSEELEYRCFIGGLAWSTSDRSLREAFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDDKKA 60

Query: 70  MDEAIKAMNGMDLDGRAIT----------------------------------------I 129
           M+EAI+ MNG+DLDGR IT                                        I
Sbjct: 61  MEEAIEEMNGLDLDGRTITVDKAQPHQGGGEEGVEGMVVGMIGMIGMVAAAVVVVVMDLI 120

Query: 130 EMEID-LVGAIGILVIEEVREVIDTVATALGHMNDGVQVLVAFVLDRIVSS 139
           EME D LVGA GILV+ EV EVIDTV  ALGHMN GVQ   A   DRI++S
Sbjct: 121 EMETDHLVGAAGILVVVEVLEVIDTVVIALGHMNVGVQE--ASDQDRIIAS 169

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy TrEMBL
Match: A0A6J1EI50 (glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita moschata OX=3662 GN=LOC111434572 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 6.03e-45
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 90
          MDEAIKAMNGMDLDGRAIT++
Sbjct: 61 MDEAIKAMNGMDLDGRAITVD 81

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy TrEMBL
Match: A0A6J1JNT9 (glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita maxima OX=3661 GN=LOC111486153 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 6.21e-45
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 90
          MDEAIKAMNGMDLDGRAIT++
Sbjct: 61 MDEAIKAMNGMDLDGRAITVD 81

[Close]

BLAST of Cp4.1LG04g07010 vs. ExPASy TrEMBL
Match: A0A0A0K5W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.12e-41
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          MA+E EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 90
          MDEAIKAMNGMDLDGR+IT++
Sbjct: 61 MDEAIKAMNGMDLDGRSITVD 81

[Close]

BLAST of Cp4.1LG04g07010 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-35
Identity = 66/81 (81.48%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+E+ EYRCFIGGL+W+TSDRGL++AFEK+GHL EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1  MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          MDEAI AMNGMDLDGR IT++
Sbjct: 61 MDEAIAAMNGMDLDGRTITVD 81

[Close]

BLAST of Cp4.1LG04g07010 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 105.5 bits (262), Expect = 9.3e-23
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T DR L+ AF ++G + ++K++ D+ +GRSRGFGFVTF ++KAM +AI
Sbjct: 7  EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]

BLAST of Cp4.1LG04g07010 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 105.5 bits (262), Expect = 9.3e-23
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T DR L+ AF ++G + ++K++ D+ +GRSRGFGFVTF ++KAM +AI
Sbjct: 7  EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]

BLAST of Cp4.1LG04g07010 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 102.8 bits (255), Expect = 6.0e-22
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 13 EGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 72
          E EYRCF+GGL+W+T+D  L+  F +FG + ++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3  EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 73 AIKAMNGMDLDGRAITI 90
          AI+ MNG +LDGR IT+
Sbjct: 63 AIEEMNGKELDGRVITV 79

[Close]

BLAST of Cp4.1LG04g07010 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 102.8 bits (255), Expect = 6.0e-22
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 13 EGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 72
          E EYRCF+GGL+W+T+D  L+  F +FG + ++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3  EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 73 AIKAMNGMDLDGRAITI 90
          AI+ MNG +LDGR IT+
Sbjct: 63 AIEEMNGKELDGRVITV 79

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIN3	3.9e-34	81.48	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
P49311	7.7e-22	58.67	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
P49310	1.3e-21	57.33	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03250	1.3e-21	58.67	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
Q03878	2.9e-21	55.84	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g07010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588784.1	7.24e-73	71.84	Beta-xylosidase/alpha-L-arabinofuranosidase 2, partial [Cucurbita argyrosperma s...	[more]
KAA0031507.1	3.01e-53	55.66	glycine-rich RNA-binding protein RZ1A [Cucumis melo var. makuwa]	[more]
KAG6571695.1	2.04e-47	58.25	F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF9869153.1	1.13e-46	61.94	hypothetical protein H0E87_027466 [Populus deltoides]	[more]
TQD86209.1	2.53e-45	59.06	hypothetical protein C1H46_028226 [Malus baccata]	[more]

BLAST of Cp4.1LG04g07010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SPV0	1.46e-53	55.66	Glycine-rich RNA-binding protein RZ1A OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A540LIP9	1.23e-45	59.06	RRM domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028226 PE=4 SV...	[more]
A0A6J1EI50	6.03e-45	97.53	glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JNT9	6.21e-45	97.53	glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0K5W4	1.12e-41	92.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g07010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26420.1	2.8e-35	81.48	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.1	9.3e-23	58.67	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	9.3e-23	58.67	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	6.0e-22	57.14	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	6.0e-22	57.14	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 1.8E-26 score: 103.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..87 e-value: 5.9E-20 score: 70.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 18.785557
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..95 e-value: 2.6E-25 score: 91.1
None	No IPR available	PANTHER	PTHR15241:SF289	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	coord: 10..90
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 10..90
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07010.1	Cp4.1LG04g07010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding