Cp4.1LG04g06290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g06290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG04: 5356401 .. 5358633 (+)
RNA-Seq Expression	Cp4.1LG04g06290
Synteny	Cp4.1LG04g06290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAGCTTCAACACCATCCTTCGATGGTGATCATTTTATTGATGCCCATATTGTCAAGACTGGTTTCAATGAAAATATATGCCGCTCTAACTTCCAGGTCAGTGACTTTCTACGGAGAGGAGATCTTTTCTACGCACATCAGGTATTTGATAAAATGCCTTGCAAAAACATGATCTCCTTGATCGTGATGATTTCTGGTTACCTTAAGTTTGGCAACTTATTTTAAGCTAGAGAGTTGTTTGATGGCATGGTGGAACGTAGGGCAGTGTCATGGACAATTCTGATTTGTGGGTGTTTGCAATCTAACCAATCTAAAGAAGCATGTAGGCTTTATGCTGATATGAGAAGGGGAGGGAACGAACCAGATTATGAGATTAGTGACTTTGTTATCAGGTTGTGGTGAATTGGAAACTAAGAATTTTATTATTCAAATCCATGCCCGTGTCATTAAACTCGGACATGAGTACAACCGCTGTTGAGGATTGTTAGGAGTGAGTCCCACATTGAATAATTAAGTGGATGATCATGAGTTTATAACTAAGGAATACGGCTCCAGTCTCCATTGATACGAGACCTTTTGGGGGAAGCCCAAAGCAAATCCATGAGAGTTTATGCTTAAAGTGGACAATATCATACCATTATGGAGAGTTGTGATTCCTAACATCCTCATGGTTTGCAACTCGTTGGTTGATGCTTATTGCAAAACCTGTTGCTTTTATTTAGCTTGCCAGCTCTCCAAGCAAATGATAATTTAACACACCTATCGCGGGTTGGTATTCTTACTTTTCTGATGGATGGTTGACGTTGTTGTTAACATAAATCAGAATTGATCAATCCGTAGGGCTCCATCCACTGAGTGCCAATACCGAAGGCGTAGTGGCATTTCCTTCGGTTACTGCATTATCCTCACGCAGGGCGTGTAAACCCTCAGAAAGGCGTATTATCTGACTTAAGACAGTCATCAGTCTCGCTACATAATTGCTTCTCAAGCACTTGATAACAAACAGATGGAGCCTCGTATAATCGGAATATCTATACTGATAGTCCGGTGACACAAAGGTTCCTCTATTGCTATAAAGTGTTCTTCATTTGGACAATAATCAAACAGCAAGGGCTAGTGAGGAATAAGCTGATTTCGTCAAGCTAGAACCGTACACAAACCCCGACCTTATTACGTCCACAAACACACCATATAAACCAGCTGGATCCTCGTACAATCCGGATATAACACATCCGGGTTGAAAAAGGATTCAGTTTAGTTTTAAGGTAATGACAGATTATTCAAATGAGGGGTTGATGGAAGAAGCAATCAAATTCTGTCTCGTGTAGTGCTTTAATCTCAGCTTATGCTCAAAATATCATTTCAGCAGATGATTCAGTCACTGTGGTTTTGTTGAAGAAGCTCTTTGGCACTTCAATTCCATGACTCAAATTTATGAAGTCACTCTAAAGAGGGAACACTATGCATCGATGGTTGATGTATTGTGTCAAAATAGAGGATTTGATGAAGCTGAGAAGTTGAAGGCCCAAATGCCATTTGAGTCTGATGAGATTATGTGGTTTAACTCATGCAGAAGTCATAAGAATCATAAGTTGACTAAGTAAGCAGCGAATCAGCTTTTTAATATGTAGTTTCGAGATGCTGGTCATTATATCAACCTGTCTAATATTTATGCTGTAGCTGGTCAGTGGGACAATGTTTCAAAGGTCAAGAAGATGATGAGGGACCGAGGGATTAGTAAGGTCCCAGCCTATAGTTGGGTTGAAATCAAACATCAGACTCATGTATTCTCAGCGACTGATAAATCACATCCCCGGATGAAGAAGATTTTGAGGAAGATTGATGCATTGACGATGCAGATGGATAAGAAAGGATATAAACCAGACATAACTTGGGCCCTTCATGACATGGATAAGGATATCAACATTTAGTTTCTTTAATACCGCAGCAGATGCTTATCAATTGCATTTGCTCTACTCGACACACCAGACGGGTCACCAATAGTTTTAATGAAAAATTTGTGAGCGCGAGACTGTCATGCTGCAAATTGCAATCAAGGTGATCTCACAGATTGTTATAAGGGAAATTACTGTTAGAGATTCGAGTAGGATTGATCATTTTAAAGATGGTTATTGTTGACCATAAAGTCTCTAGATGAACAGTCTAGATTGTCGTCAAAACAATCAATTTGTGCAATCATTCTACAGACAAACTTAGAGCTGCTTATCTA

mRNA sequence

CTCAAAGCTTCAACACCATCCTTCGATGGTGATCATTTTATTGATGCCCATATTGTCAAGACTGGTTTCAATGAAAATATATGCCGCTCTAACTTCCAGGTCAGTGACTTTCTACGGAGAGGAGATCTTTTCTACGCACATCAGGTATTTGATAAAATGCCTTGCAAAAACATGATCTCCTTGATCGTGATGATTTCTGCTAGAGAGTTGTTTGATGGCATGGTGGAACGTAGGGCAGTGTCATGGACAATTCTGATTTGTGGGTGTTTGCAATCTAACCAATCTAAAGAAGCATGTAGGCTTTATGCTGATATGAGAAGGGGAGGGAACGAACCAGATTATGAGATTAGTGACTTTGTAATGACAGATTATTCAAATGAGGGGTTGATGGAAGAAGCAATCAAATTCTGTCTCGTTCACTGTGGTTTTGTTGAAGAAGCTCTTTGGCACTTCAATTCCATGACTCAAATTTATGAAGTCACTCTAAAGAGGGAACACTATGCATCGATGGTTGATGTATTGTGTCAAAATAGAGGATTTGATGAAGCTGAGAAGTTGAAGGCCCAAATGCCATTTGAGTCTGATGAGATTATGTGGTTTAACTCATGCAGAAATGCTGGTCATTATATCAACCTGTCTAATATTTATGCTGTAGCTGGTCAGTGGGACAATGTTTCAAAGGTCAAGAAGATGATGAGGGACCGAGGGATTAGTAAGGTCCCAGCCTATAGTTGGGTTGAAATCAAACATCAGACTCATGTATTCTCAGCGACTGATAAATCACATCCCCGGATGAAGAAGATTTTGAGGAAGATTGATGCATTGACGATGCAGATGGATAAGAAAGGATATAAACCAGACATAACTTGGGCCCTTCATGACATGGATAAGGATATCAACATTTACAGATGCTTATCAATTGCATTTGCTCTACTCGACACACCAGACGGGTCACCAATACGCGAGACTGTCATGCTGCAAATTGCAATCAAGGTGATCTCACAGATTGTTATAAGGGAAATTACTGTTAGAGATTCGAGTAGGATTGATCATTTTAAAGATGACAAACTTAGAGCTGCTTATCTA

Coding sequence (CDS)

CTCAAAGCTTCAACACCATCCTTCGATGGTGATCATTTTATTGATGCCCATATTGTCAAGACTGGTTTCAATGAAAATATATGCCGCTCTAACTTCCAGGTCAGTGACTTTCTACGGAGAGGAGATCTTTTCTACGCACATCAGGTATTTGATAAAATGCCTTGCAAAAACATGATCTCCTTGATCGTGATGATTTCTGCTAGAGAGTTGTTTGATGGCATGGTGGAACGTAGGGCAGTGTCATGGACAATTCTGATTTGTGGGTGTTTGCAATCTAACCAATCTAAAGAAGCATGTAGGCTTTATGCTGATATGAGAAGGGGAGGGAACGAACCAGATTATGAGATTAGTGACTTTGTAATGACAGATTATTCAAATGAGGGGTTGATGGAAGAAGCAATCAAATTCTGTCTCGTTCACTGTGGTTTTGTTGAAGAAGCTCTTTGGCACTTCAATTCCATGACTCAAATTTATGAAGTCACTCTAAAGAGGGAACACTATGCATCGATGGTTGATGTATTGTGTCAAAATAGAGGATTTGATGAAGCTGAGAAGTTGAAGGCCCAAATGCCATTTGAGTCTGATGAGATTATGTGGTTTAACTCATGCAGAAATGCTGGTCATTATATCAACCTGTCTAATATTTATGCTGTAGCTGGTCAGTGGGACAATGTTTCAAAGGTCAAGAAGATGATGAGGGACCGAGGGATTAGTAAGGTCCCAGCCTATAGTTGGGTTGAAATCAAACATCAGACTCATGTATTCTCAGCGACTGATAAATCACATCCCCGGATGAAGAAGATTTTGAGGAAGATTGATGCATTGACGATGCAGATGGATAAGAAAGGATATAAACCAGACATAACTTGGGCCCTTCATGACATGGATAAGGATATCAACATTTACAGATGCTTATCAATTGCATTTGCTCTACTCGACACACCAGACGGGTCACCAATACGCGAGACTGTCATGCTGCAAATTGCAATCAAGGTGATCTCACAGATTGTTATAAGGGAAATTACTGTTAGAGATTCGAGTAGGATTGATCATTTTAAAGATGACAAACTTAGAGCTGCTTATCTA

Protein sequence

LKASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEAIKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFESDEIMWFNSCRNAGHYINLSNIYAVAGQWDNVSKVKKMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIYRCLSIAFALLDTPDGSPIRETVMLQIAIKVISQIVIREITVRDSSRIDHFKDDKLRAAYL

Homology

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BLAST of Cp4.1LG04g06290 vs. ExPASy Swiss-Prot
Match: Q9S7F4 (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 5.1e-63
Identity = 145/378 (38.36%), Postives = 207/378 (54.76%), Query Frame = 0


Query: 14  IDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDG 73
           + A I+++G  EN+   +  V  + + G +  A QVF++MP                   
Sbjct: 474 LHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP------------------- 533

Query: 74  MVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEA 133
             +R AVSW  LI     +   + A   +A M   G +PD      V+T  S        
Sbjct: 534 --DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS-------- 593

Query: 134 IKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFE 193
                 HCGFVE+   +F +M+ IY +T K++HYA M+D+L +N  F EAEKL  +MPFE
Sbjct: 594 ------HCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFE 653

Query: 194 SDEIMW---FNSC----------------------RNAGHYINLSNIYAVAGQWDNVSKV 253
            DEIMW    N+C                      R+A  Y+++SNIYA AG+W+ V  V
Sbjct: 654 PDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDV 713

Query: 254 KKMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDI 313
           KK MR+RGI KVPAYSWVE+ H+ HVFS+ D++HP   +I+RKI+ LT +++++GYKPD 
Sbjct: 714 KKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDT 773

Query: 314 TWALHDMDKDINIYRC------LSIAFALLDTPDGSPI------RETVMLQIAIKVISQI 355
           +  + D+D+ + I         L++AFAL+ TP+G PI      R       AIK+IS+I
Sbjct: 774 SSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKI 816

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BLAST of Cp4.1LG04g06290 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-42
Identity = 116/375 (30.93%), Postives = 188/375 (50.13%), Query Frame = 0


Query: 14  IDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDG 73
           +  ++++ GF  NI  ++  V  + + G++  A ++FD+M   N++              
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRM---NVLD------------- 424

Query: 74  MVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEA 133
                 VSWT +I G        EA  L+ +M+R G +P+      V+T  S        
Sbjct: 425 -----EVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS-------- 484

Query: 134 IKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFE 193
                 H G V+EA  +FNSMT++Y +  + EHYA++ D+L +    +EA    ++M  E
Sbjct: 485 ------HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVE 544

Query: 194 SDEIMW---FNSC---------------------RNAGHYINLSNIYAVAGQWDNVSKVK 253
               +W    +SC                      N G Y+ + N+YA  G+W  ++K++
Sbjct: 545 PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLR 604

Query: 254 KMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDIT 313
             MR +G+ K PA SW+E+K++TH F + D+SHP M KI   + A+  QM+K+GY  D +
Sbjct: 605 LRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTS 664

Query: 314 WALHDMDKD------INIYRCLSIAFALLDTPDGSPIRETVMLQI------AIKVISQIV 353
             LHD+D++            L++AF +++T  G+ IR T  ++I      AIK IS+I 
Sbjct: 665 GVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKIT 704

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BLAST of Cp4.1LG04g06290 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.3e-41
Identity = 108/377 (28.65%), Postives = 176/377 (46.68%), Query Frame = 0


Query: 14  IDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDG 73
           I    VK+G   ++  SN  ++ + + G++  A + FD + C                  
Sbjct: 435 IHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRC------------------ 494

Query: 74  MVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEA 133
             ER  VSWT +I    Q   ++EA  L+  M   G  PD+              +    
Sbjct: 495 --ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH--------------ITYVG 554

Query: 134 IKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFE 193
           +     H G V +   +F+ M  + ++     HYA MVD+  +     EA++   +MP E
Sbjct: 555 VFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIE 614

Query: 194 SDEIMW---FNSCR---------------------NAGHYINLSNIYAVAGQWDNVSKVK 253
            D + W    ++CR                     N+G Y  L+N+Y+  G+W+  +K++
Sbjct: 615 PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIR 674

Query: 254 KMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDIT 313
           K M+D  + K   +SW+E+KH+ HVF   D +HP   +I   +  +  ++ K GY PD  
Sbjct: 675 KSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTA 734

Query: 314 WALHDMDKDI--NIYR----CLSIAFALLDTPDGSPIRETVMLQI------AIKVISQIV 355
             LHD+++++   I R     L+IAF L+ TPD + +R    L++      AIK IS++V
Sbjct: 735 SVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLV 777

[Close]

BLAST of Cp4.1LG04g06290 vs. ExPASy Swiss-Prot
Match: Q9FRI5 (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-40
Identity = 106/376 (28.19%), Postives = 177/376 (47.07%), Query Frame = 0


Query: 16  AHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDGMV 75
           A ++K GF+ ++   N  ++ + + G +  A QVF  MPC +                  
Sbjct: 441 AQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLD------------------ 500

Query: 76  ERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEAIK 135
              +VSW  LI    Q     EA  +Y +M + G  PD      V+T  S+ GL+++  K
Sbjct: 501 ---SVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRK 560

Query: 136 FCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFESD 195
           +              F+SM  +Y +    +HYA ++D+LC++  F +AE +   +PF+  
Sbjct: 561 Y--------------FDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPT 620

Query: 196 EIMW---FNSCR---------------------NAGHYINLSNIYAVAGQWDNVSKVKKM 255
             +W    + CR                     + G Y+ LSN++A  GQW+ V++V+K+
Sbjct: 621 AEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKL 680

Query: 256 MRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDITWA 315
           MRDRG+ K  A SW+E++ Q H F   D SHP  + +   +  L  +M + GY PD ++ 
Sbjct: 681 MRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFV 740

Query: 316 LHDMDKD-------INIYRCLSIAFALLDTPDGSPIRETVMLQIA------IKVISQIVI 355
           LHD++ D             +++AF L+  P G+ IR    L+         + +S +V 
Sbjct: 741 LHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQ 781

[Close]

BLAST of Cp4.1LG04g06290 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.7e-40
Identity = 102/324 (31.48%), Postives = 162/324 (50.00%), Query Frame = 0


Query: 67  ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSN 126
           A +LF  M  +  VSW  +I G  +    + A R +  M+R G +PD             
Sbjct: 463 ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPD------------- 522

Query: 127 EGLMEEAIKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKL 186
           +  M   +  C  H G V++   +F +MTQ Y V    +HYA MVD+L +    ++A  L
Sbjct: 523 DATMVAVLSAC-SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNL 582

Query: 187 KAQMPFESDEIMWFN------------------------SCRNAGHYINLSNIYAVAGQW 246
              MPFE D  +W                             N+G Y+ LSN+YA +G+W
Sbjct: 583 MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRW 642

Query: 247 DNVSKVKKMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKK 306
            +V K++  MRD+G+ KVP YSW+EI+++TH FS  D+ HP   +I   ++ L ++M K 
Sbjct: 643 GDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKA 702

Query: 307 GYKPDITWALHDMDKD-----INIY-RCLSIAFALLDTPDGSPIRETVMLQI------AI 355
           GY    +  LHD++++     +  +   L++A+ ++    G PIR    L++      AI
Sbjct: 703 GYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAI 762

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BLAST of Cp4.1LG04g06290 vs. NCBI nr
Match: XP_022156499.1 (putative pentatricopeptide repeat-containing protein At2g01510 [Momordica charantia])

HSP 1 Score: 354 bits (908), Expect = 1.37e-111
Identity = 276/790 (34.94%), Postives = 303/790 (38.35%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  P+ +GDH IDAHIVKTGFN N CRSNFQV++FL+ GDLF+AHQVFD+MPCKN ISL
Sbjct: 18  QAPKPAINGDHVIDAHIVKTGFNANTCRSNFQVNNFLQSGDLFHAHQVFDQMPCKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            VMIS          ARELFDGMVER AVSWTILI G LQSNQSKEACRLYADMRRGG E
Sbjct: 78  NVMISGFLKFGNLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEACRLYADMRRGGTE 137

Query: 122 PDY--------------------EISDFV------------------------------- 181
           PDY                    +I   V                               
Sbjct: 138 PDYVTLVTLLSGCGELETKNVIVQIHTHVIKLGYECNLTVCNSLVDAYCKTHCLYLAGQL 197

Query: 182 ---------------MTDYSNEGLMEEAIKF----------------------------- 241
                          MT YSNEGL EEAIK                              
Sbjct: 198 FKQMLNKDTVTFNALMTGYSNEGLSEEAIKLFVELQNTEIKPSEFTFAALLCAAVGLDDT 257

Query: 242 ------------------------------------------------------------ 301
                                                                       
Sbjct: 258 SFGKQVHGLVLKVNFVWNVFVGNALLDYYSKHNRVDEARKLFDEMPELDGVSYNVVITGY 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFKESFDLFSQLQLARFDRRQFPFATLLSIAANNLNLKMGQQIHCQAIAVGANFEP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. NCBI nr
Match: XP_022983245.1 (putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita maxima])

HSP 1 Score: 351 bits (901), Expect = 1.50e-110
Identity = 279/790 (35.32%), Postives = 299/790 (37.85%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  PS +G H IDAH VKTGFN N CRSNFQV++FL+RGD+F+AHQVFD+MPCKN ISL
Sbjct: 18  QAPNPSLNGKHLIDAHSVKTGFNANTCRSNFQVNNFLQRGDIFHAHQVFDQMPCKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            VMIS          ARELFDGMVER AVSWTILI G LQSNQSKEACRLYADMRRGG E
Sbjct: 78  NVMISGYLKFGNLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEACRLYADMRRGGTE 137

Query: 122 PDYE-------------------------------------------------------- 181
           PDY                                                         
Sbjct: 138 PDYVTLVTLLSGCSELETNNVIVQIHTHVIKLGYECNIMVCNSLVDAYCKTHCLYLASQL 197

Query: 182 -----ISDFV-----MTDYSNEGLMEEAIKFCLV-------------------------- 241
                I D V     MT YSNEG  EEAIK  L                           
Sbjct: 198 FKQMLIKDTVTFNALMTGYSNEGSSEEAIKLFLELQNSGIKPSEFTFAALLCSAVGLDDT 257

Query: 242 ------------------------------------------------------------ 301
                                                                       
Sbjct: 258 NFGQQVHGLIIKTNFVWNVFVGNALLDFYSKHDRVDLAGKLFHEMPELDGISYNVVITGH 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFEVSFDLFKQLQFTRFDRRQFPFATLLSIATNTLNLRIGRQIHCQAIAVGAYLDP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. NCBI nr
Match: XP_023528913.1 (putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo subsp. pepo] >XP_023528914.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo subsp. pepo] >XP_023528915.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo subsp. pepo] >XP_023528916.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo subsp. pepo] >XP_023528917.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo subsp. pepo] >XP_023528918.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo subsp. pepo] >XP_023528919.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350 bits (899), Expect = 2.97e-110
Identity = 279/790 (35.32%), Postives = 297/790 (37.59%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  PS +G H IDAH VKTGFN N CRSNFQV +FL+RGDLF+AHQVFD+MPCKN ISL
Sbjct: 18  QAPNPSLNGKHLIDAHSVKTGFNANTCRSNFQVKNFLQRGDLFHAHQVFDQMPCKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            VMIS          ARELFDGM+ER AVSWTILI G LQSNQSKEACRLY DMRRGG E
Sbjct: 78  NVMISGYLKFGNLSKARELFDGMLERTAVSWTILIGGYLQSNQSKEACRLYGDMRRGGTE 137

Query: 122 PDYE-------------------------------------------------------- 181
           PDY                                                         
Sbjct: 138 PDYVTLVTLLSGCGELETNNVIVQIHTHVIKLGYECNLMVCNSLVDAYCKTHCLYLASQL 197

Query: 182 -----ISDFV-----MTDYSNEGLMEEAIKFCLV-------------------------- 241
                I D V     MT YSNEG  EEAIK  L                           
Sbjct: 198 FKQMLIKDTVTFNALMTGYSNEGSSEEAIKLFLELQNSGIKPSEFTFAALLCAAVGLDDT 257

Query: 242 ------------------------------------------------------------ 301
                                                                       
Sbjct: 258 NFGQQVHGLIIKTNFVWNVFVGNALLDFYSKHDRVDLARKLFHEMPELDGISYNVVITGH 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFEESFDLFRQLQFTRFDRRQFPFATLLSIATNTLNWRIGRQIHSQAIAVGAYLDP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. NCBI nr
Match: XP_022935227.1 (putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita moschata] >XP_022935228.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita moschata] >XP_022935229.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita moschata] >XP_022935230.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita moschata] >XP_022935231.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita moschata])

HSP 1 Score: 349 bits (895), Expect = 1.16e-109
Identity = 278/790 (35.19%), Postives = 297/790 (37.59%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  PS +G H IDAH VKTGFN N CRSNFQV +FL+RGDLF+AHQVFD+MPCKN ISL
Sbjct: 18  QAPNPSLNGKHLIDAHSVKTGFNANTCRSNFQVKNFLQRGDLFHAHQVFDQMPCKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            VMIS          ARELFDGM+ER AVSWTILI G LQSNQSKEACRLY DMRRGG E
Sbjct: 78  NVMISGYLKFGNLSKARELFDGMLERTAVSWTILIGGYLQSNQSKEACRLYGDMRRGGTE 137

Query: 122 PDYE-------------------------------------------------------- 181
           PDY                                                         
Sbjct: 138 PDYVTLVTLLSGCGELETNNVIVQIHTHVIKLGYECNLMVCNSLVDAYCKTHCLYLASQI 197

Query: 182 -----ISDFV-----MTDYSNEGLMEEAIKFCLV-------------------------- 241
                I D V     MT YSNEG  EEAIK  L                           
Sbjct: 198 FKQMLIKDTVTFNALMTGYSNEGSSEEAIKLFLELQNIGIKPSEFTFAALLCAAVGLDDT 257

Query: 242 ------------------------------------------------------------ 301
                                                                       
Sbjct: 258 NFGQQVHGLIIKTNFVWNVFVGNALLDFYSKHDRVDLARKLFHEMPELDGISYNVVITGH 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFEESFDLFRRLQFTRFDRRQFPFATLLSIATNTLNWRIGRQIHCQAIAVGAYLDP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. NCBI nr
Match: KAG7017850.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348 bits (893), Expect = 2.30e-109
Identity = 278/790 (35.19%), Postives = 296/790 (37.47%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  PS +G H IDAH VKTGFN N CRSNFQV +FL+RGDLF+AHQVFD+MPCKN ISL
Sbjct: 18  QAPNPSLNGKHLIDAHSVKTGFNANTCRSNFQVKNFLQRGDLFHAHQVFDQMPCKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            VMIS          ARELFDGM+ER AVSWTILI G LQSNQSKEACRLY DMRRGG E
Sbjct: 78  NVMISGYLKFGNLSKARELFDGMLERTAVSWTILIGGYLQSNQSKEACRLYGDMRRGGTE 137

Query: 122 PDYE-------------------------------------------------------- 181
           PDY                                                         
Sbjct: 138 PDYVTLVTLLSGCGELETNNVIVQIHTHVIKLGYECNLMVCNSLVDAYCKTHCLYLASQI 197

Query: 182 -----ISDFV-----MTDYSNEGLMEEAIKFCLV-------------------------- 241
                I D V     MT YSNEG  EEAIK  L                           
Sbjct: 198 FKQMLIKDTVTFNALMTGYSNEGSSEEAIKLFLELQNSGIKPSEFTFAALLCAAVGLDDT 257

Query: 242 ------------------------------------------------------------ 301
                                                                       
Sbjct: 258 NFGQQVHGLIIKTNFVWNVFVGNALLDFYSKHDRVDLARKFFHEMPELDGISYNVVITGH 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFEESFDLFRQLQFTRFDRRQFPFATLLSIATNTLNWRIGRQIHCQAIAVGAYLEP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. ExPASy TrEMBL
Match: A0A6J1DTN0 (putative pentatricopeptide repeat-containing protein At2g01510 OS=Momordica charantia OX=3673 GN=LOC111023381 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 6.65e-112
Identity = 276/790 (34.94%), Postives = 303/790 (38.35%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  P+ +GDH IDAHIVKTGFN N CRSNFQV++FL+ GDLF+AHQVFD+MPCKN ISL
Sbjct: 18  QAPKPAINGDHVIDAHIVKTGFNANTCRSNFQVNNFLQSGDLFHAHQVFDQMPCKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            VMIS          ARELFDGMVER AVSWTILI G LQSNQSKEACRLYADMRRGG E
Sbjct: 78  NVMISGFLKFGNLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEACRLYADMRRGGTE 137

Query: 122 PDY--------------------EISDFV------------------------------- 181
           PDY                    +I   V                               
Sbjct: 138 PDYVTLVTLLSGCGELETKNVIVQIHTHVIKLGYECNLTVCNSLVDAYCKTHCLYLAGQL 197

Query: 182 ---------------MTDYSNEGLMEEAIKF----------------------------- 241
                          MT YSNEGL EEAIK                              
Sbjct: 198 FKQMLNKDTVTFNALMTGYSNEGLSEEAIKLFVELQNTEIKPSEFTFAALLCAAVGLDDT 257

Query: 242 ------------------------------------------------------------ 301
                                                                       
Sbjct: 258 SFGKQVHGLVLKVNFVWNVFVGNALLDYYSKHNRVDEARKLFDEMPELDGVSYNVVITGY 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFKESFDLFSQLQLARFDRRQFPFATLLSIAANNLNLKMGQQIHCQAIAVGANFEP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. ExPASy TrEMBL
Match: A0A6J1J5B6 (putative pentatricopeptide repeat-containing protein At2g01510 OS=Cucurbita maxima OX=3661 GN=LOC111481882 PE=3 SV=1)

HSP 1 Score: 351 bits (901), Expect = 7.26e-111
Identity = 279/790 (35.32%), Postives = 299/790 (37.85%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  PS +G H IDAH VKTGFN N CRSNFQV++FL+RGD+F+AHQVFD+MPCKN ISL
Sbjct: 18  QAPNPSLNGKHLIDAHSVKTGFNANTCRSNFQVNNFLQRGDIFHAHQVFDQMPCKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            VMIS          ARELFDGMVER AVSWTILI G LQSNQSKEACRLYADMRRGG E
Sbjct: 78  NVMISGYLKFGNLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEACRLYADMRRGGTE 137

Query: 122 PDYE-------------------------------------------------------- 181
           PDY                                                         
Sbjct: 138 PDYVTLVTLLSGCSELETNNVIVQIHTHVIKLGYECNIMVCNSLVDAYCKTHCLYLASQL 197

Query: 182 -----ISDFV-----MTDYSNEGLMEEAIKFCLV-------------------------- 241
                I D V     MT YSNEG  EEAIK  L                           
Sbjct: 198 FKQMLIKDTVTFNALMTGYSNEGSSEEAIKLFLELQNSGIKPSEFTFAALLCSAVGLDDT 257

Query: 242 ------------------------------------------------------------ 301
                                                                       
Sbjct: 258 NFGQQVHGLIIKTNFVWNVFVGNALLDFYSKHDRVDLAGKLFHEMPELDGISYNVVITGH 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFEVSFDLFKQLQFTRFDRRQFPFATLLSIATNTLNLRIGRQIHCQAIAVGAYLDP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. ExPASy TrEMBL
Match: A0A6J1F3Z7 (putative pentatricopeptide repeat-containing protein At2g01510 OS=Cucurbita moschata OX=3662 GN=LOC111442174 PE=3 SV=1)

HSP 1 Score: 349 bits (895), Expect = 5.63e-110
Identity = 278/790 (35.19%), Postives = 297/790 (37.59%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  PS +G H IDAH VKTGFN N CRSNFQV +FL+RGDLF+AHQVFD+MPCKN ISL
Sbjct: 18  QAPNPSLNGKHLIDAHSVKTGFNANTCRSNFQVKNFLQRGDLFHAHQVFDQMPCKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            VMIS          ARELFDGM+ER AVSWTILI G LQSNQSKEACRLY DMRRGG E
Sbjct: 78  NVMISGYLKFGNLSKARELFDGMLERTAVSWTILIGGYLQSNQSKEACRLYGDMRRGGTE 137

Query: 122 PDYE-------------------------------------------------------- 181
           PDY                                                         
Sbjct: 138 PDYVTLVTLLSGCGELETNNVIVQIHTHVIKLGYECNLMVCNSLVDAYCKTHCLYLASQI 197

Query: 182 -----ISDFV-----MTDYSNEGLMEEAIKFCLV-------------------------- 241
                I D V     MT YSNEG  EEAIK  L                           
Sbjct: 198 FKQMLIKDTVTFNALMTGYSNEGSSEEAIKLFLELQNIGIKPSEFTFAALLCAAVGLDDT 257

Query: 242 ------------------------------------------------------------ 301
                                                                       
Sbjct: 258 NFGQQVHGLIIKTNFVWNVFVGNALLDFYSKHDRVDLARKLFHEMPELDGISYNVVITGH 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFEESFDLFRRLQFTRFDRRQFPFATLLSIATNTLNWRIGRQIHCQAIAVGAYLDP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. ExPASy TrEMBL
Match: A0A5A7V351 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00320 PE=3 SV=1)

HSP 1 Score: 336 bits (862), Expect = 4.32e-105
Identity = 272/790 (34.43%), Postives = 295/790 (37.34%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  PS + +H IDAHIVKTGFN N CRSNFQV+ FL RGDL +AHQVFD+MP KN ISL
Sbjct: 18  QAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNSFLERGDLVHAHQVFDQMPAKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            +MIS          ARELFDGMVER AVSWTILI G LQSNQSKEA RLYADMRRGG E
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGLE 137

Query: 122 PDYE-----ISDF----------------------------------------------- 181
           PDY      +S F                                               
Sbjct: 138 PDYVTLVTLLSGFGELETKNVIVQIHTQVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQL 197

Query: 182 --------------VMTDYSNEGLMEEAIK------------------------------ 241
                         +MT Y+NEGL EEAIK                              
Sbjct: 198 FKHMLNKDTVTFNSLMTGYTNEGLSEEAIKLFLELHNSGIKPSDFTFAALLSAAVGLDDI 257

Query: 242 -----------------------------------------FCLV--------------- 301
                                                    FC +               
Sbjct: 258 KFGQQVHGFVLKTNFVRNVFVGNALLDYYSKQDQVDEVRKLFCEMPELDGISYNVVITSY 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFKESFDLFRKLQFTRFDRKQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFEP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. ExPASy TrEMBL
Match: A0A1S3BNK2 (putative pentatricopeptide repeat-containing protein At2g01510 OS=Cucumis melo OX=3656 GN=LOC103491821 PE=3 SV=1)

HSP 1 Score: 336 bits (862), Expect = 4.32e-105
Identity = 272/790 (34.43%), Postives = 295/790 (37.34%), Query Frame = 0


Query: 2   KASTPSFDGDHFIDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISL 61
           +A  PS + +H IDAHIVKTGFN N CRSNFQV+ FL RGDL +AHQVFD+MP KN ISL
Sbjct: 18  QAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNSFLERGDLVHAHQVFDQMPAKNTISL 77

Query: 62  IVMIS----------ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNE 121
            +MIS          ARELFDGMVER AVSWTILI G LQSNQSKEA RLYADMRRGG E
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGLE 137

Query: 122 PDYE-----ISDF----------------------------------------------- 181
           PDY      +S F                                               
Sbjct: 138 PDYVTLVTLLSGFGELETKNVIVQIHTQVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQL 197

Query: 182 --------------VMTDYSNEGLMEEAIK------------------------------ 241
                         +MT Y+NEGL EEAIK                              
Sbjct: 198 FKHMLNKDTVTFNSLMTGYTNEGLSEEAIKLFLELHNSGIKPSDFTFAALLSAAVGLDDI 257

Query: 242 -----------------------------------------FCLV--------------- 301
                                                    FC +               
Sbjct: 258 KFGQQVHGFVLKTNFVRNVFVGNALLDYYSKQDQVDEVRKLFCEMPELDGISYNVVITSY 317

Query: 302 ------------------------------------------------------------ 354
                                                                       
Sbjct: 318 AWNGQFKESFDLFRKLQFTRFDRKQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFEP 377

[Close]

BLAST of Cp4.1LG04g06290 vs. TAIR 10
Match: AT3G02010.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 243.0 bits (619), Expect = 3.6e-64
Identity = 145/378 (38.36%), Postives = 207/378 (54.76%), Query Frame = 0


Query: 14  IDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDG 73
           + A I+++G  EN+   +  V  + + G +  A QVF++MP                   
Sbjct: 474 LHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP------------------- 533

Query: 74  MVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEA 133
             +R AVSW  LI     +   + A   +A M   G +PD      V+T  S        
Sbjct: 534 --DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS-------- 593

Query: 134 IKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFE 193
                 HCGFVE+   +F +M+ IY +T K++HYA M+D+L +N  F EAEKL  +MPFE
Sbjct: 594 ------HCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFE 653

Query: 194 SDEIMW---FNSC----------------------RNAGHYINLSNIYAVAGQWDNVSKV 253
            DEIMW    N+C                      R+A  Y+++SNIYA AG+W+ V  V
Sbjct: 654 PDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDV 713

Query: 254 KKMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDI 313
           KK MR+RGI KVPAYSWVE+ H+ HVFS+ D++HP   +I+RKI+ LT +++++GYKPD 
Sbjct: 714 KKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDT 773

Query: 314 TWALHDMDKDINIYRC------LSIAFALLDTPDGSPI------RETVMLQIAIKVISQI 355
           +  + D+D+ + I         L++AFAL+ TP+G PI      R       AIK+IS+I
Sbjct: 774 SSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKI 816

[Close]

BLAST of Cp4.1LG04g06290 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-43
Identity = 116/375 (30.93%), Postives = 188/375 (50.13%), Query Frame = 0


Query: 14  IDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDG 73
           +  ++++ GF  NI  ++  V  + + G++  A ++FD+M   N++              
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRM---NVLD------------- 424

Query: 74  MVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEA 133
                 VSWT +I G        EA  L+ +M+R G +P+      V+T  S        
Sbjct: 425 -----EVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS-------- 484

Query: 134 IKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFE 193
                 H G V+EA  +FNSMT++Y +  + EHYA++ D+L +    +EA    ++M  E
Sbjct: 485 ------HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVE 544

Query: 194 SDEIMW---FNSC---------------------RNAGHYINLSNIYAVAGQWDNVSKVK 253
               +W    +SC                      N G Y+ + N+YA  G+W  ++K++
Sbjct: 545 PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLR 604

Query: 254 KMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDIT 313
             MR +G+ K PA SW+E+K++TH F + D+SHP M KI   + A+  QM+K+GY  D +
Sbjct: 605 LRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTS 664

Query: 314 WALHDMDKD------INIYRCLSIAFALLDTPDGSPIRETVMLQI------AIKVISQIV 353
             LHD+D++            L++AF +++T  G+ IR T  ++I      AIK IS+I 
Sbjct: 665 GVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKIT 704

[Close]

BLAST of Cp4.1LG04g06290 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 169.1 bits (427), Expect = 6.6e-42
Identity = 108/377 (28.65%), Postives = 176/377 (46.68%), Query Frame = 0


Query: 14  IDAHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDG 73
           I    VK+G   ++  SN  ++ + + G++  A + FD + C                  
Sbjct: 435 IHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRC------------------ 494

Query: 74  MVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEA 133
             ER  VSWT +I    Q   ++EA  L+  M   G  PD+              +    
Sbjct: 495 --ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH--------------ITYVG 554

Query: 134 IKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFE 193
           +     H G V +   +F+ M  + ++     HYA MVD+  +     EA++   +MP E
Sbjct: 555 VFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIE 614

Query: 194 SDEIMW---FNSCR---------------------NAGHYINLSNIYAVAGQWDNVSKVK 253
            D + W    ++CR                     N+G Y  L+N+Y+  G+W+  +K++
Sbjct: 615 PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIR 674

Query: 254 KMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDIT 313
           K M+D  + K   +SW+E+KH+ HVF   D +HP   +I   +  +  ++ K GY PD  
Sbjct: 675 KSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTA 734

Query: 314 WALHDMDKDI--NIYR----CLSIAFALLDTPDGSPIRETVMLQI------AIKVISQIV 355
             LHD+++++   I R     L+IAF L+ TPD + +R    L++      AIK IS++V
Sbjct: 735 SVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLV 777

[Close]

BLAST of Cp4.1LG04g06290 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 168.7 bits (426), Expect = 8.6e-42
Identity = 106/376 (28.19%), Postives = 177/376 (47.07%), Query Frame = 0


Query: 16  AHIVKTGFNENICRSNFQVSDFLRRGDLFYAHQVFDKMPCKNMISLIVMISARELFDGMV 75
           A ++K GF+ ++   N  ++ + + G +  A QVF  MPC +                  
Sbjct: 441 AQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLD------------------ 500

Query: 76  ERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSNEGLMEEAIK 135
              +VSW  LI    Q     EA  +Y +M + G  PD      V+T  S+ GL+++  K
Sbjct: 501 ---SVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRK 560

Query: 136 FCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKLKAQMPFESD 195
           +              F+SM  +Y +    +HYA ++D+LC++  F +AE +   +PF+  
Sbjct: 561 Y--------------FDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPT 620

Query: 196 EIMW---FNSCR---------------------NAGHYINLSNIYAVAGQWDNVSKVKKM 255
             +W    + CR                     + G Y+ LSN++A  GQW+ V++V+K+
Sbjct: 621 AEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKL 680

Query: 256 MRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKKGYKPDITWA 315
           MRDRG+ K  A SW+E++ Q H F   D SHP  + +   +  L  +M + GY PD ++ 
Sbjct: 681 MRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFV 740

Query: 316 LHDMDKD-------INIYRCLSIAFALLDTPDGSPIRETVMLQIA------IKVISQIVI 355
           LHD++ D             +++AF L+  P G+ IR    L+         + +S +V 
Sbjct: 741 LHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQ 781

[Close]

BLAST of Cp4.1LG04g06290 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 1.9e-41
Identity = 102/324 (31.48%), Postives = 162/324 (50.00%), Query Frame = 0


Query: 67  ARELFDGMVERRAVSWTILICGCLQSNQSKEACRLYADMRRGGNEPDYEISDFVMTDYSN 126
           A +LF  M  +  VSW  +I G  +    + A R +  M+R G +PD             
Sbjct: 463 ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPD------------- 522

Query: 127 EGLMEEAIKFCLVHCGFVEEALWHFNSMTQIYEVTLKREHYASMVDVLCQNRGFDEAEKL 186
           +  M   +  C  H G V++   +F +MTQ Y V    +HYA MVD+L +    ++A  L
Sbjct: 523 DATMVAVLSAC-SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNL 582

Query: 187 KAQMPFESDEIMWFN------------------------SCRNAGHYINLSNIYAVAGQW 246
              MPFE D  +W                             N+G Y+ LSN+YA +G+W
Sbjct: 583 MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRW 642

Query: 247 DNVSKVKKMMRDRGISKVPAYSWVEIKHQTHVFSATDKSHPRMKKILRKIDALTMQMDKK 306
            +V K++  MRD+G+ KVP YSW+EI+++TH FS  D+ HP   +I   ++ L ++M K 
Sbjct: 643 GDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKA 702

Query: 307 GYKPDITWALHDMDKD-----INIY-RCLSIAFALLDTPDGSPIRETVMLQI------AI 355
           GY    +  LHD++++     +  +   L++A+ ++    G PIR    L++      AI
Sbjct: 703 GYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAI 762

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g06290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7F4	5.1e-63	38.36	Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis th...	[more]
Q9LW63	1.7e-42	30.93	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]
Q9SHZ8	9.3e-41	28.65	Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX...	[more]
Q9FRI5	1.2e-40	28.19	Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX...	[more]
Q9SY02	2.7e-40	31.48	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG04g06290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156499.1	1.37e-111	34.94	putative pentatricopeptide repeat-containing protein At2g01510 [Momordica charan...	[more]
XP_022983245.1	1.50e-110	35.32	putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita maxima...	[more]
XP_023528913.1	2.97e-110	35.32	putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo s...	[more]
XP_022935227.1	1.16e-109	35.19	putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita moscha...	[more]
KAG7017850.1	2.30e-109	35.19	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]

BLAST of Cp4.1LG04g06290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTN0	6.65e-112	34.94	putative pentatricopeptide repeat-containing protein At2g01510 OS=Momordica char...	[more]
A0A6J1J5B6	7.26e-111	35.32	putative pentatricopeptide repeat-containing protein At2g01510 OS=Cucurbita maxi...	[more]
A0A6J1F3Z7	5.63e-110	35.19	putative pentatricopeptide repeat-containing protein At2g01510 OS=Cucurbita mosc...	[more]
A0A5A7V351	4.32e-105	34.43	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3BNK2	4.32e-105	34.43	putative pentatricopeptide repeat-containing protein At2g01510 OS=Cucumis melo O...	[more]

BLAST of Cp4.1LG04g06290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02010.1	3.6e-64	38.36	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G23330.1	1.2e-43	30.93	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G22070.1	6.6e-42	28.65	pentatricopeptide (PPR) repeat-containing protein	[more]
AT1G25360.1	8.6e-42	28.19	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G02750.1	1.9e-41	31.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 25..136 e-value: 9.8E-13 score: 49.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 137..298 e-value: 1.1E-10 score: 43.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 167..190 e-value: 0.26 score: 11.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 80..113 e-value: 9.4E-7 score: 26.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 79..113 e-value: 9.7E-8 score: 32.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 78..112 score: 10.161182
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 243..353 e-value: 1.3E-13 score: 50.9
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 139..204 coord: 203..315 coord: 18..114
None	No IPR available	PANTHER	PTHR47925:SF81	SUBFAMILY NOT NAMED	coord: 18..114
None	No IPR available	PANTHER	PTHR47925:SF81	SUBFAMILY NOT NAMED	coord: 139..204 coord: 203..315

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g06290.1	Cp4.1LG04g06290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding