Cp4.1LG04g03880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g03880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG04: 6902210 .. 6902963 (-)
RNA-Seq ExpressionCp4.1LG04g03880
SyntenyCp4.1LG04g03880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGTGGGAAGGGTTCGGTCTTTTTGGCTTTCTTGCTCTTCTTTTTCCTCTTCTCCTCGGAGCTGGCTGCTGCCCGGAAGCTGATGGTGGCCGGAAACAATGGTGAGGTTCTTACATATTGTGCAGCCTACGGTTTTAGTTTTGGTTAAGTATATATAGTGAAAGCTTAAATTTGTTTTTGGATGCAGCAGCGGTCATGCATGAAGGCCGCACCACTTTCGTCACCCCCCGCACACGAAACCCCAACAAACCCGTTTGCGATCGCCCAGGTCGTTATGGTGATTGCTTCCCACGGCCAACCCCACCCGGAGTCTGCAATCCTTATTCACGAAATTGCCCTCCGCAGAACTGAAGTGGACACTAAGATCAAACACCATGGAAACTAAATAAACTAACCCACACCTACCTGGGTTTTGATTACTATCTGTCTTATGTGTATTGAATCCTATTTATATGGTTATAAGTTTGGGAGATTTGTGTTTTATCTCGAGGTTGCGCGAGTATAATTGGAGTAAGATACGTGATTAAGTGTTCACAAGCTATTATTTATCTCAACGTTCATACCTAACCGTAACTAAAAATTTAAAATTCTTACCTTTAATTATCTTTCGATCGATATCGGTGATTCAAAAGTCTATATTAATCGTTCTTAATGTTTTGAGCAACTTTTAAGAAGGATGCTCGACCAAAAGACGCTTTTAAATACTTATCTTATGTGTAAACAATTATGAATTTTGAGCAAATCCTATC

mRNA sequence

ATGAGTGGTGGGAAGGGTTCGGTCTTTTTGGCTTTCTTGCTCTTCTTTTTCCTCTTCTCCTCGGAGCTGGCTGCTGCCCGGAAGCTGATGGTGGCCGGAAACAATGGTGAGCAGCGGTCATGCATGAAGGCCGCACCACTTTCGTCACCCCCCGCACACGAAACCCCAACAAACCCGTTTGCGATCGCCCAGGTCGTTATGGTGATTGCTTCCCACGGCCAACCCCACCCGGAGTCTGCAATCCTTATTCACGAAATTGCCCTCCGCAGAACTGAAGTGGACACTAAGATCAAACACCATGGAAACTAAATAAACTAACCCACACCTACCTGGGTTTTGATTACTATCTGTCTTATGTGTATTGAATCCTATTTATATGGTTATAAGTTTGGGAGATTTGTGTTTTATCTCGAGGTTGCGCGAGTATAATTGGAGTAAGATACGTGATTAAGTGTTCACAAGCTATTATTTATCTCAACGTTCATACCTAACCGTAACTAAAAATTTAAAATTCTTACCTTTAATTATCTTTCGATCGATATCGGTGATTCAAAAGTCTATATTAATCGTTCTTAATGTTTTGAGCAACTTTTAAGAAGGATGCTCGACCAAAAGACGCTTTTAAATACTTATCTTATGTGTAAACAATTATGAATTTTGAGCAAATCCTATC

Coding sequence (CDS)

ATGAGTGGTGGGAAGGGTTCGGTCTTTTTGGCTTTCTTGCTCTTCTTTTTCCTCTTCTCCTCGGAGCTGGCTGCTGCCCGGAAGCTGATGGTGGCCGGAAACAATGGTGAGCAGCGGTCATGCATGAAGGCCGCACCACTTTCGTCACCCCCCGCACACGAAACCCCAACAAACCCGTTTGCGATCGCCCAGGTCGTTATGGTGATTGCTTCCCACGGCCAACCCCACCCGGAGTCTGCAATCCTTATTCACGAAATTGCCCTCCGCAGAACTGAAGTGGACACTAAGATCAAACACCATGGAAACTAA

Protein sequence

MSGGKGSVFLAFLLFFFLFSSELAAARKLMVAGNNGEQRSCMKAAPLSSPPAHETPTNPFAIAQVVMVIASHGQPHPESAILIHEIALRRTEVDTKIKHHGN
Homology
[Close]
BLAST of Cp4.1LG04g03880 vs. NCBI nr
Match: KAG6589127.1 (hypothetical protein SDJN03_17692, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169 bits (427), Expect = 3.78e-52
Identity = 89/102 (87.25%), Postives = 91/102 (89.22%), Query Frame = 0 

Query: 1   MSGGKGSVFLAFLLFFFLFSSELAAARKLMVAGNNGEQRSCMKAAPLSSPPAHETPTNPF 60
           MSGGKG VFLA LLFFFL SSEL AARKLMVAGNNGEQRS MKAAP  S PA ET T+PF
Sbjct: 1   MSGGKGWVFLALLLFFFLVSSELGAARKLMVAGNNGEQRSYMKAAPFISAPAQETATDPF 60

Query: 61  AIAQVVMVIASHGQPHPESAILIHEIALRRTEVDTKIKHHGN 102
           AI QVV+VIASHGQPHPESAILIHEIALRRTEVDTKIKHHGN
Sbjct: 61  AIVQVVIVIASHGQPHPESAILIHEIALRRTEVDTKIKHHGN 102

[Close]
BLAST of Cp4.1LG04g03880 vs. NCBI nr
Match: KAG6589129.1 (hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 4.15e-11
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1  MSGGKGSVFLAFLLFFFLFSSELAAARKLMVAGNN 35
          MSGGKGSV LAFLLFFFLFSSELAAARKLMVAGNN
Sbjct: 1  MSGGKGSVLLAFLLFFFLFSSELAAARKLMVAGNN 35

[Close]
BLAST of Cp4.1LG04g03880 vs. NCBI nr
Match: KAG6589128.1 (hypothetical protein SDJN03_17693, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 5.09e-07
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MSGGKGSVFLAFLLFFFLFSSELAAARKLMVAGNN 35
          MSG K SVFLAFLLFFFL SSEL AARKLMVAG N
Sbjct: 1  MSGRKVSVFLAFLLFFFLVSSELGAARKLMVAGKN 35

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03880 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03880 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589127.13.78e-5287.25hypothetical protein SDJN03_17692, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589129.14.15e-1197.14hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589128.15.09e-0785.71hypothetical protein SDJN03_17693, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG04g03880 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03880 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03880.1Cp4.1LG04g03880.1mRNA