Cp4.1LG04g02540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g02540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribonuclease Z
Location	Cp4.1LG04: 7744328 .. 7755878 (-)
RNA-Seq Expression	Cp4.1LG04g02540
Synteny	Cp4.1LG04g02540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGTTCGTCATCTCTACAAAGGAATTTCGCGCTTCAGTCCCCTCCCAACCAGCGGCAGGTACATATCCACTTTATCCGTCATCTGGGACTCCAATTAAACCTCCCTTAAACCCCAATACTCTCTTCAAATCCCTTCTCCTTCACAAACCTCTGTAATTTCCTTCTGACCCATTAAAAAGATGCAAATTTCCATGGCCATTTCGCCACTCACAGCTCCTCAAATTTTCCCATTTCATCAACCCATTTTGCAGTCACCGAAACCTCACAAAATTGCTCTCCAGAGACATGGGACTCCTGTAAATTCCTTCAGAGATTCGGGTCTCTTATCCACAATCGGCGTCGAAGAAGAATACCGGAGAGCTCGGTCACAGGTTAATCGAAAGGGGGTGGATTTAGAAGGGTATTCAATCGAGGGCATTTCAGTTGGTGGGCAAGAAACCTGTATTATTATTCCTGAATTCAAGTGTGCATTTGATATTGGGAGGTGCCCATCTCGAGCCATTCAGCAAAACTTTGTATTCATCACTCACGCCCACCTTGATCACATTGTAAGCTTCTTTAGCACAACCAATGAACCTTATCCGCTTCTATTATCAATGTTGTCACTTCACTAAAGATTTTTTAACTTACTATTCACCATATTCAATTAAGTATGTGCTATTTATAATCTGTCAATTAAGCTGATGAGGGAACTAAGAACTAGATTTCTTCAAGAATTATGAACCGTTTCTGATGGTGGTTTCAACTTGTTCTGGTTCAGGGTGGGCTACCAATGTACGTAGCTAGTCGTGGTTTATATAGTTTAAGTCCTCCTACGGTATTTGTGCCTCCTTGTATTAAAGAAGACGTGGAGAAACTACTTGAGATTCACAGGACCATGGGCCAGGTGGAGTTGGACGTTGATCTGGTTGCACTAGATGTAGGTAGGTTGCGTATTTGAGCTTAGTTGTTCTTTATTTTGACTGAAGTGTGCATCATTGTTCGACGGAACTGAAAGTAACATCACTTTCTGAATCCAGGAGACACATATGAAATGCGGAATAACCTTGTCTGCAGAGCATTTGAAACAAATCATGTGATTCCGAGCCAGGTATGCTCTATCTGCGTGGCAGGACATCTTTTTCATTGTATACATATTGATGGAGACCTTACAGACCTGATAGGGAGAGTGTAGCTTTAGTTATCTTTTTATTTACAGGAAGTTTTCAGGAGACAGGTTTTTCATGTATGGGAATGAATCATTGTATGTGGATTAATATGTGGAATCTTATTTCTTATAGCCGATCGTTTTCTTAAGATCGAATACTCGGGTAGCAAATCCTTGTGCCTGCATATTTTTGGCTTTACAGTTGTAGTGAGGACCCTGTTTGCGTTTCCACGTTCTTTTGACTCGATAAGTAGCTGTCTTTTTATTGAGGGCAGAAAGCGTGTAGTGATTTATCGCCAACTTTTAGGATAGTAGATTTTATCCGTTTCCAAAAATTGATATTGATCGTTTTATTTTCGGTGTTGAAGCATGTCTCAAATAGTTTCATCAGTAGAACATATGATTAAATACTTCACATTGTATGCAGGGTTATGTCATTTATTCGGTTAGAAAAAAATTGAAGAAGCAATACATGCATCTTAAGGGGAAACAGATCGAGAAGCTTAAGAAATCTGGCGTCGAGGCATGTCTTGCACAACTAGTTGGTTCCATTATTTAGTCTTTCCATATTTGGCACTAGTTTGATTTTGAGATTTTTGTTTCAGATTACAGACACCATATTGTCCCCTGAGGTGGCCTTCACAGGAGATACAAGGACAGATTTTATGCTTGATCCACGTAATGCCGATGCATTGAGGGCGAAAATTCTAATAACTGAGGTATAAACTGTGAAACTCTGGTTCAACTTTTTCTCTCTTCTTGGATAGAGCTTCTTATCAAATTATCATGAATACTCTATTCTAATATCCGGTGAGAAATGCGTTGTTCCAGCAATTTCCGTGCCTCCAAATGTCCGTTCTGCTTTTATCAGCTTTTCTTTCTCAAGATATATTTGGGGATTCTCTTCATAATCTGACTATTTGTTACAACAACATGACAGCAACCCAATAGTAAGGAGATTTCAAGAACAAGAATTTTTTTATTAGATAGATAGTATGAACATTGAAGTAATTCAAGGAACCGCATCCCTCTTAAGCAAACCTAAGCCTGAAATAGGCACGTAATCGCCTAACTTAATTCCTTGCCACCTTATTCCTCTGTGTACAGCCAATGGTCCCTAATGTACTTGTAGCTAACCTACACTTCACATACCATTCCTCAATGATGATAATATCCATTGCTATAAGGCCTACTGTTATTTACCTGAAAACATACTTTGTTCTCTAGGGTGGCTTAAGCCATAGGCTAAATGTTAAAAAAAAATCCCTCCACTGTTTACCTACTCCAGGAGAAAGTTACATGGCCTAAGTGACAGGCTAATCATGTGATGCATGAGGTCGTCATATGTCAATGGTGCCGTGGCTGTGTGTGTGACATGGGTCGCTTTTTGTAATACAGTTATTATTAAAGATAGAAAGGGAAGGAGGGAAAGTTAACTAGTAGCTCAGTCTTTCAAAAGTATACGAACGATTCTGTTCCTCAATCAATATAATTGGCATATCAAAACGAAGTCTATCTCATTGTTCTAACCTTTTTGAAGTATCACCTTGAATTTCCTATTTCTAGCTTATAGTTGGAAGGAGTTTGATCTTTTTGCTTGGTTCTCCTAATGTTTTGAATAACTTTAATTTTGACCTCCACCCTATCCGGATCATGCTTCGAGGTACTCTTCCTCCTTGACCAGAAATATTTTTCTGTAATCAATTTGATTGAAAAGAATTGCAGATGGTATTAAAGTTTGGGTGTTGCGTTCTTGCTTTGAACCTCTTGTCTGTTAAAGTTTGCATCTTACTGATAAATCCTCTTGAAAACAGGCAACTTTTCTGGATGAAGGTGTTAGCATAGAACATGCAAGGGAACATGGTCATACTCACATATTTGAGGTATTTGAAGCATCGGTTGTCGTCTCTTACGTGATGAGCTGTCCTTTTTGTTGATTACATATTTGAACATTTATTGTCCTTTACGAAATTCATCTCGTTTTTATGATGAGGGTTCGGGGTAGAATATTAATCCTTCCTAACTTTAGTTCTAATGTCTGTTCAATGTATCTTCATCCCATGGTTGAATCATCATTATTGATACAATTATTGACTCTATGATTTCACAAAATTGCAGATCATTGAAAATGCACAGTGGATTCGAAACAAAGCTATTCTGCTTACGCATTTTTCATCCCGATACCATATAGAGGTGAAAGTTATTTCAATGAAGTTCATTTTTAGCTGCACTCATGATGACAAGTCTCTGGCGTGCAGTATGCTTTTTTTTCTTTTCTTTTAATAAATAATACGAAGTTTAGTTTTCATTAAGAGAAATGAAAGAATGTACAAGGACCAGCCTAAACCCACCGCTAGCGGGTATTGTCCACTTTGGCCCGTTACGTATCGCTGTTACGCGTCTACTANTTTGGATATTGTCCTCTTTGGGATTTCCCTTTCGGGCCCACCCTCAAGGCTTTTAAACGCGTCTGCTAGGGGAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAACGTGGCAACAAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATTTGGGGCGTTACAAATGGTATCAGAGCCAGACACTGGCCGATGTGCCAGCCTTCTCGCCGTTCCCCAAAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCCAAAGGGGGGTGGATTTGGGGGCAGTCTCACATCGATTGGAGGAAGGAAAGAGTGCCAGCGAGGACGTTGAGCCCCGAAGGGAGGTGGATTGTGATGTCCCACATTGGTTGGTGAGGAGAATAAATCACCATTTATGAGGGTGTGGAAACCTTCTCTAGCAGACGCTAGACGCGTTTTAAAGTCTTGAGGGGAAGCCCGTAAGGAAAAGCCCAACGAGGACAATATCTGCTAGCAGTGGGCCTGGGTCGTTACAGATTTCCACACCCTTACAAGAAATGATCTTGATCTTACTAGCCCACCAACAAAAACCCTTAAACTTCTTACAATAATAGACTAATCCAAAAGCATGAAATCATTGCTGGTAATTATAGAAAGCCTGATTATGTAACGACCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGTTAGGGGAAGGTTTCCACACCCTTATAAAGGGTGATTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCCCCTTCGGGGCCCAGCGTCCTCGTTGGCACTCGTTCCTTTATCCAATCGATGTGGGACCGCCCCCAAATCCACCTACTTTGGGGTCCAGCGTCCTTACTGGCACACCGCCTCGTGTCTACCTCCCTTCGGGGAACAGCGAGAAGGCCGGCACATCGTCCGGTGACTGGCTCTGATACCATTTGTAACGACCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGTTAGGGGAAGGTTTCCACACCCTTATAAAGGGTGATTTGTTCTCCTCCCCAACCAATGTGAGACATCACAGATTAACAGAGAAGAGTTAAATCTAAGCAACTTCCAAAGCTCCTCATCCTCTAAAGATCCTACTATTTATCTCAAGCCAAATGCCTCACAGAATGACGAAACAAGCATGTCACAAAATTCTTCCTTTAATGCGAAAAGGAGGGTTCAAGACTCAAGAGCTCCTCCTCAATAATAGAGCAACACCCTCTGTTATGAGTCAGATCATCTAACATGCATTGGTTCACATCACAACTTTGGGCTTCGTGCCTGATTTCTTGTATGCACTCTCTGTTAGGCACGCCCACGTCGACCTTATATGCTTATTTCTTTGATTAGCTGCATAATCAGTTTCCACTTCAGCTCTGAAGAAGTCATAGTTGAAACCTGCTCATCTGCCTTTAAAGATCATTAATAGCTAATCCAAAATTGCTTTTAATCTTTGACCTGCGTCCTAAAAGTAACAGCTCATATGTCAGCAATTACAGACGAATAAATGCTTTTTGAATTGCAGGACATCCGGAAAGCGGTATCAAAGTTGCAGTCCAAGGTGACGGCAAAAGTCGTTCCTCTCACTGAAGGTTTCAAGTCAGTGTATTAATGTAGGCTATGGGATTCTTGGGAACAAAGTGTAATTATATTTAGCATCAAAGCAGAGAAACTGGAACATAGGTAATTATTTCTCTGTAAATTGATTCTTGTTTTCTTTAGCGTTATCCCCTTAGCAAAAACTATATTTTGCCTTATTAATAGGCATTCTGACACATGTTTGAAGCTATAACTCAATCAATAGAGGTGCAGTTTAAGCTATACATGTTGGTTAGTTTGGTTTTGTATAATGTAAGGTCCAAATTTTTATTTGATTGATTGATTGGATATCAATGGACTTTCTCCATTTCAGTCAGTTCGGTTTTGGTCGTTGGTTATGATCAGTTTTTGTCTTGCAGCAGTGGTCTTAGTGTCGGTTTTTCTTAAACGATAGGTCGATCTTAGCCATAAACCCAACCGGAATGACCCACTTACACACTTGGTAGTCCCCCTGGAGCAGGGTTTTCTCTCTAGTTGAACCACTACTATATCTGAATGAATTATATTACCGATTACCGAGTTCCCAGATGAAAACGGGACCAAGTGGATGTGGAAGAGAAGAGGACAATTTTAAGGTCTGAAACAAAAACTACAATCATCAAGTTAGAAATGAGAAAGAATGAAGAATCTGCATTAGAATTGATGTAGTTAGCCAGGACCTCTCTTCCTTTATTCTCTCCATTGCCTTAAAGCACCTCCAAACCACAGCACATGCATATTAATGCACCTCCAAGACAACAAAGTACACGCAGTCCCACTCTCTACCCCCATCTAAATTAAGATATCTTTCTCCATTGTCGGGTCCTCCTTTAGTTCCTGGATTGACCGGAAGGAACCATCGTTCGTTCATGAACCTTTGGACAACACCTTCGTTTATGCTTGTTGTTGTACTCAACATGGGTTTATCTTGCAGGAAACGGAGGGAAATTCCCAGCTTTTTAGGCTCTGTGGTGTGAAGGCTTAGCCTATAGCTTACATCATTCCAGTTGAGGACAGTACCAATACACTGCAACATATCATAAAAGTGATAGGAGACATCACTGTGACAAAATAGTCCCAAATTCATTTCAACCACACAATAGATCCAAACAGAGAATGAGTGATGAGTGATGTACTTTCTTTGTTCCTACAACACCCTATCATTTCGATCAATACCATAACATTTCTCGTCTTCTACAATACTACAATGTCTGGCTTATAATGTACGTCCAGAGCACATGAAAACTCAGAGGCCGATAATATCTTGGCTTCATTTGGAGTTTGATTGACGTAAAGTAAAGGCTTCCTTAACCCCAACCACTCCTTTTCGTTGTGAAAAAAGACCGTAAAAAACTATTCGAGGAGTGTTTCTTAAGAACTAAAAAGAAAGCACTCGATTATACGTTTTGGATTAAACTAGAAAAGCTCCCAAAAAATTTGTCAAAAATGAACACCGAAGCCAAGAAAGAACAATCAATGAAGGCGTAGAAATTACGTTTGAGAAAAGAGTGACTGCACTGGATACGGGTGGGACCCATTGACGTGGAGAAATATGATTGGTAACTCATTACTAGTAACGTAAGGTTGGATAAGAAAAAGATGATATTTTTGTTGCTAATTACGCAAATCCAAGCTTTGATAAATGAGTATTATGTATGAGATCAGCATGAGGGGGTGGTGAAATCAATTGAATCCTTGAAATAATAATGTTTATTAAGGTTATGGATCTTACGGGCAGTGAAAAGGGGGAAAAGAAAAATGTTTTTATGGACTCATCACATGTCCAACCCAACCCATCTGGGGAATCTTGGAGAAACCCTGCGATTTGTGATGTCATGCGTCTGTATCTGGCGATTCATATATACTAGCTGTTGATCCCCTTTGGCTTTTCGTTGTCAGGCACCAGAGAGCACAGGCACCACAGCCAAATTCAAAAACTCCTCCTCACGCAATCTAATCAAAGAAGCTTCGTGGTAACGCCCTTCTGCATCGGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTGCTCCCTGCGGCAGCGCTTTTCTTTTTCCATCGTGGAAGCGCTTTATTTTGTTTTTATCTAGGTGGGAATTGGTAGTTTCTGGCTTAATAATTCCCTTTTTGTTTACTCCGATTCTGATTGCGTTCTAATTTGGGGGGTTTCTGTTTCATCGCCTGTGTTTCTTTCTTTTGTTTTGTTTCGTTTTTTTGGTGATTTAGAAGGTTTTCTCATCTGGGTCAGAGCTGAATCGCGGTTTTTGGCTATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGAGTTTGTGGCCACTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATATGTGGTCATCGTGTTCCCGCTACATCCGAGAAAACTTCGCTGCAAGTTAGTGCGTTTCCTTCAGAGATCTTGCCAGAGTTTCTCTATTTGGGAAGTTATGACAACGCTTCACGGTCTGAACTTTTGAAGACTCAAGGAATTTCTCGCGTTCTTAACGTATGTTCAATTTCTTCCTTCTCTGTGTCTTCAGATTTTATTCCCCCTTCTGAATCGAGTACAATTTTGATTTTCACTTTAGGTTGCTACTGTTGCTTCAGCTGATGGATATAAATGCTCTTGATTGTTCCTTAATCTGAATGTTTAATTAATATCTGTTCTATTTCCACTACGGGTATGCATTTTATCTACAAAACTCTGCCTGGTTTAAGAGTTTGGGGGCGAAAATCATCCATTAAGTTACTTGTTATTGTTGCCTAATTGGATCATAATGGCGCAGTTGACCTTTGAAGTTAAAGATTTTGTCTGCAAAGTGGGGTTGTGGTTCGTTTTTTTCTTCTCTTTTACAGCATCATGGTGTAGGTTATTTTGTTCATGGTATTGATTCTGTTGTGATGGAACAGTTCCTAATTCTTCGGTAGGCATAATTTTATTTCGACTAAAGTTCGACTGCGCGATGCTGATGAAGAAGCTTTTATATGCATGCCAATGTGTTGAAATGTAGGATTGCTCGCCTTTAAGAGGCCTCAAATGGAGGGGTTGAGTTATTATGCTAATCAATTATGCATTTTCGATAACTAACGATGTCACGTTATCAGCCCTAAGATCCTATGGATATGGATATAAATGAGTTTGATCGTACTAAAATGCAGTTTCATCGTAGAATATTTCGCAGTTGTTACTTATGCAGAGTATTGTATGTTGCTATCACTTGCCATTGAAATGGATTAGGTGCTGAACAATTGGTTTTCTCCGCCCTATGTTTGCAGACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATACGACAAGACGTTACCATTTGATGACGCTGTTGAATTTCTAGGTGCCTTTTCTTTATCTTCTCCGAAATGAACTGTATCTGCTAATTCATTTGTTAGGTTAGTCCATGTCTTGCTATGTTTTTCGTTTTTAAATGCCGACTTTCGTATAAAAAGATCGACGCACTGTGATTACTTTAATGCTAAATAAGATTACTCATCTGCTGAATGAATGGCTTTCGGTTAAGACCATGACTAGCTTTCTGTCATTCACTGAGAGAAGTGTAACATGCCCGGTGTTGCTTATGATTTTCAGATCAATGTGAACGAGATAAGGCTCGTGTTTTGGTGCACTGCATGTCGGGAAAAAACAGGTTCTCTCCCCTATTCATTGATAAAACTGGAACTCTGCAACTATATATGTACCCGGTCGACATGGGACCAACGAATGAATAATATCCTTGCTAATAGATTAAACTTATTGATCATAGGTCTCCAGCTATTGTAATCGCGTTCTTGATGAAATGCAAAGGATGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCCGTTGACTTAACTGAGCGTATGTATTTCACACATTATCCTGAAGTTCCTCGTGTTCTTTTCTAGAAAATATCGCTTTGCTTAGTCATATAATTCTCCCTTAATCTCTGAATAATTAAGTCAAAACGTGCTTTTCGTGGATCACGAGCTGCCATAAGACATGCCTTTACCCCTACTACTTACCATGAAGTGCACATTTGTTATATTTCTTTTACCAAATGGACTGGAAACAGAGGCCTGCACTGCATCTGCTTTGCTGTATCCATATTTTGGTCAAATAACTTGTTTGTTCTGATTATTTTCCATTTCATTCAACTTTGTTCGATCGCTACATCTACTCGATGATGCCTTTTTCTTATTGCATTTTAACGTCTTCTAGTCGATTAGGGAATGTTTTCATCTTCAAATAATGTACTCTGACCTACATTTTGGTCTGTGAAAATAGCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCAACCGAAAACGCCCTCTCAACCTTACCAATCTTCCCTCCTGTTGGTCTGCCTTCTTTTAGCTTCGGCTTCCCAAAGACCTGCGACCCAGTTCCCACAACTCCATTCAACACCATTGGTGCAACATCTATCTTCTCCGCCCCCAACATAGACTTACCTTCTCACGAGTTCACGTTCGGCGCTGGCCAGACTCAAACTAGTTTCTCCGCAAGCCCCTTTGGCGCAAATCCAAGAAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAAAACTCACTAGTCGCCATCTTAGTAGTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTTTGTCAGATGTGATGAGTCTTACTGAATTTGAGGGGTGAGAGGTGGGAAACTTTAGTTTGTATGATTAATNAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATACGACAAGACGTTACCATTTGATGACGCTGTTGAATTTCTAGGTGCCTTTTCTTTATCTTCTCCGAAATGAACTGTATCTGCTAATTCATTTGTTAGGTTAGTCCATGTCTTGCTATGTTTTTCGTTTTTAAATGCCGACTTTCGTATAAAAAGATCGACGCACTGTGATTACTTTAATGCTAAATAAGATTACTCATCTGCTGAATGAATGGCTTTCGGTTAAGACCATGACTAGCTTTCTGTCATTCACTGAGAGAAGTGTAACATGCCCGGTGTTGCTTATGATTTTCAGATCAATGTGAACGAGATAAGGCTCGTGTTTTGGTGCACTGCATGTCGGGAAAAAACAGGTTCTCTCCCCTATTCATTGATAAAACTGGAACTCTGCAACTATATATGTACCCGGTCGACATGGGACCAACGAATGAATAATATCCTTGCTAATAGATTAAACTTATTGATCATAGGTCTCCAGCTATTGTAATCGCGTTCTTGATGAAATGCAAAGGATGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCCGTTGACTTAACTGAGCGTATGTATTTCACACATTATCCTGAAGTTCCTCGTGTTCTTTTCTAGAAAATATCGCTTTGCTTAGTCATATAATTCTCCCTTAATCTCTGAATAATTAAGTCAAAACGTGCTTTTCGTGGATCACGAGCTGCCATAAGACATGCCTTTACCCCTACTACTTACCATGAAGTGCACATTTGTTATATTTCTTTTACCAAATGGACTGGAAACAGAGGCCTGCACTGCATCTGCTTTGCTGTATCCATATTTTGGTCAAATAACTTGTTTGTTCTGATTATTTTCCATTTCATTCAACTTTGTTCGATCGCTACATCTACTCGATGATGCCTTTTTCTTATTGCATTTTAACGTCTTCTAGTCGATTAGGGAATGTTTTCATCTTCAAATAATGTACTCTGACCTACATTTTGGTCTGTGAAAATAGCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCAACCGAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTACTCTTTAGGGGTGTGTACCTCATCAAGTCCAGTCAAATATTGTTCAAACTTGACTCATCACTAATGTTATACAATCTCATAAATATCATATCATATCACCATTTACTTTCTCGCTCTTAACCCTTTTAGTTGATTGTTTTGTGGTTGTCTCTTTGCTATGATGGGGCATGTTTCAGTGACTCTATTCCACTCAGAAAGAGCTGGAACTGATGTTAGAATTGCTTTA

mRNA sequence

TATAGTTCGTCATCTCTACAAAGGAATTTCGCGCTTCAGTCCCCTCCCAACCAGCGGCAGGTACATATCCACTTTATCCGTCATCTGGGACTCCAATTAAACCTCCCTTAAACCCCAATACTCTCTTCAAATCCCTTCTCCTTCACAAACCTCTGTAATTTCCTTCTGACCCATTAAAAAGATGCAAATTTCCATGGCCATTTCGCCACTCACAGCTCCTCAAATTTTCCCATTTCATCAACCCATTTTGCAGTCACCGAAACCTCACAAAATTGCTCTCCAGAGACATGGGACTCCTGTAAATTCCTTCAGAGATTCGGGTCTCTTATCCACAATCGGCGTCGAAGAAGAATACCGGAGAGCTCGGTCACAGGTTAATCGAAAGGGGGTGGATTTAGAAGGGTATTCAATCGAGGGCATTTCAGTTGGTGGGCAAGAAACCTGTATTATTATTCCTGAATTCAAGTGTGCATTTGATATTGGGAGGTGCCCATCTCGAGCCATTCAGCAAAACTTTGTATTCATCACTCACGCCCACCTTGATCACATTGGTGGGCTACCAATGTACGTAGCTAGTCGTGGTTTATATAGTTTAAGTCCTCCTACGGTATTTGTGCCTCCTTGTATTAAAGAAGACGTGGAGAAACTACTTGAGATTCACAGGACCATGGGCCAGGTGGAGTTGGACGTTGATCTGGTTGCACTAGATGTAGGAGACACATATGAAATGCGGAATAACCTTGTCTGCAGAGCATTTGAAACAAATCATGTGATTCCGAGCCAGGGTTATGTCATTTATTCGGTTAGAAAAAAATTGAAGAAGCAATACATGCATCTTAAGGGGAAACAGATCGAGAAGCTTAAGAAATCTGGCGTCGAGGCATGTCTTGCACAACTAATTACAGACACCATATTGTCCCCTGAGGTGGCCTTCACAGGAGATACAAGGACAGATTTTATGCTTGATCCACGTAATGCCGATGCATTGAGGGCGAAAATTCTAATAACTGAGGCAACTTTTCTGGATGAAGGTGTTAGCATAGAACATGCAAGGGAACATGGTCATACTCACATATTTGAGATCATTGAAAATGCACAGTGGATTCGAAACAAAGCTATTCTGCTTACGCATTTTTCATCCCGATACCATATAGAGGACATCCGGAAAGCGGTATCAAAGTTGCAGTCCAAGGTGACGGCAAAAGTCGTTCCTCTCACTGAAGGTTTCAAGTCAGTGTATTAATGTAGGCTATGGGATTCTTGGGAACAAAGTGTAATTATATTTAGCATCAAAGCAGAGAAACTGGAACATAGGCACCAGAGAGCACAGGCACCACAGCCAAATTCAAAAACTCCTCCTCACGCAATCTAATCAAAGAAGCTTCGTGGTAACGCCCTTCTGCATCGGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTGCTCCCTGCGGCAGCGCTTTTCTTTTTCCATCGTGGAAGCGCTTTATTTTGTTTTTATCTAGAAGGTTTTCTCATCTGGGTCAGAGCTGAATCGCGGTTTTTGGCTATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGAGTTTGTGGCCACTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATATGTGGTCATCGTGTTCCCGCTACATCCGAGAAAACTTCGCTGCAAGTTAGTGCGTTTCCTTCAGAGATCTTGCCAGAGTTTCTCTATTTGGGAAGTTATGACAACGCTTCACGGTCTGAACTTTTGAAGACTCAAGGAATTTCTCGCGTTCTTAACACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATACGACAAGACGTTACCATTTGATGACGCTGTTGAATTTCTAGATCAATGTGAACGAGATAAGGCTCGTGTTTTGGTGCACTGCATGTCGGGAAAAAACAGGTCTCCAGCTATTGTAATCGCGTTCTTGATGAAATGCAAAGGATGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCCGTTGACTTAACTGAGCCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCAACCGAAAACGCCCTCTCAACCTTACCAATCTTCCCTCCTGTTGGTCTGCCTTCTTTTAGCTTCGGCTTCCCAAAGACCTGCGACCCAGTTCCCACAACTCCATTCAACACCATTGGTGCAACATCTATCTTCTCCGCCCCCAACATAGACTTACCTTCTCACGAGTTCACGTTCGGCGCTGGCCAGACTCAAACTAGTTTCTCCGCAAGCCCCTTTGGCGCAAATCCAAGAAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAAAACTCACTAGTCGCCATCTTAGTAGTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTTTGTCAGATGTGATGAGTCTTACTGAATTTGAGGGGTGAGAGGTGGGAAACTTTAGTTTGTATGATTAATNAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATACGACAAGACGTTACCATTTGATGACGCTGTTGAATTTCTAGATCAATGTGAACGAGATAAGGCTCGTGTTTTGGTGCACTGCATGTCGGGAAAAAACAGGTCTCCAGCTATTGTAATCGCGTTCTTGATGAAATGCAAAGGATGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCCGTTGACTTAACTGAGCCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCAACCGAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTACTCTTTAGGGGTGTGTACCTCATCAAGTCCAGTCAAATATTGTTCAAACTTGACTCATCACTAATGTTATACAATCTCATAAATATCATATCATATCACCATTTACTTTCTCGCTCTTAACCCTTTTAGTTGATTGTTTTGTGGTTGTCTCTTTGCTATGATGGGGCATGTTTCAGTGACTCTATTCCACTCAGAAAGAGCTGGAACTGATGTTAGAATTGCTTTA

Coding sequence (CDS)

ATGCAAATTTCCATGGCCATTTCGCCACTCACAGCTCCTCAAATTTTCCCATTTCATCAACCCATTTTGCAGTCACCGAAACCTCACAAAATTGCTCTCCAGAGACATGGGACTCCTGTAAATTCCTTCAGAGATTCGGGTCTCTTATCCACAATCGGCGTCGAAGAAGAATACCGGAGAGCTCGGTCACAGGTTAATCGAAAGGGGGTGGATTTAGAAGGGTATTCAATCGAGGGCATTTCAGTTGGTGGGCAAGAAACCTGTATTATTATTCCTGAATTCAAGTGTGCATTTGATATTGGGAGGTGCCCATCTCGAGCCATTCAGCAAAACTTTGTATTCATCACTCACGCCCACCTTGATCACATTGGTGGGCTACCAATGTACGTAGCTAGTCGTGGTTTATATAGTTTAAGTCCTCCTACGGTATTTGTGCCTCCTTGTATTAAAGAAGACGTGGAGAAACTACTTGAGATTCACAGGACCATGGGCCAGGTGGAGTTGGACGTTGATCTGGTTGCACTAGATGTAGGAGACACATATGAAATGCGGAATAACCTTGTCTGCAGAGCATTTGAAACAAATCATGTGATTCCGAGCCAGGGTTATGTCATTTATTCGGTTAGAAAAAAATTGAAGAAGCAATACATGCATCTTAAGGGGAAACAGATCGAGAAGCTTAAGAAATCTGGCGTCGAGGCATGTCTTGCACAACTAATTACAGACACCATATTGTCCCCTGAGGTGGCCTTCACAGGAGATACAAGGACAGATTTTATGCTTGATCCACGTAATGCCGATGCATTGAGGGCGAAAATTCTAATAACTGAGGCAACTTTTCTGGATGAAGGTGTTAGCATAGAACATGCAAGGGAACATGGTCATACTCACATATTTGAGATCATTGAAAATGCACAGTGGATTCGAAACAAAGCTATTCTGCTTACGCATTTTTCATCCCGATACCATATAGAGGACATCCGGAAAGCGGTATCAAAGTTGCAGTCCAAGGTGACGGCAAAAGTCGTTCCTCTCACTGAAGGTTTCAAGTCAGTGTATTAA

Protein sequence

MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHLDHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDTYEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLITDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFEIIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY

Homology

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy Swiss-Prot
Match: Q8L633 (tRNase Z TRZ2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TRZ2 PE=2 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 1.0e-137
Identity = 253/365 (69.32%), Postives = 301/365 (82.47%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFP---FHQPILQSPKPHKIALQ-----RHGTPVNSFRDSGLLSTI 60
           MQ+S +  P++ P+IFP    H+P + +   H++A Q     RH   V+  + SG  S+I
Sbjct: 1   MQLSSSF-PISPPKIFPSTKHHKPPVIT---HQLAAQIQSNRRHF--VSPVKVSGYFSSI 60

Query: 61  G----VEEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAI 120
                 EEEYR+AR+ VNRKGV+LE Y+IEGISVGG ETC+I+PE KC FDIGRCPSRAI
Sbjct: 61  SRAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAI 120

Query: 121 QQNFVFITHAHLDHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVEL 180
           QQ F+FITHAHLDHIGGLPMYVASRGLY+L PP +FVPP IKEDVEKLLEIHRTMGQVEL
Sbjct: 121 QQKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVEL 180

Query: 181 DVDLVALDVGDTYEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLK 240
           +V+L+ L VG+TYE+RN++V R F T+HVIPSQGYVIYSVRKKL+KQY HLKGKQIEK+K
Sbjct: 181 NVELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIK 240

Query: 241 KSGVEACLAQLITDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIE 300
           KSGVE      ITDTILSPE+AFTGDT +++MLDPRNADALRAK+LITEATFLDE  S E
Sbjct: 241 KSGVE------ITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTE 300

Query: 301 HAREHGHTHIFEIIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEG 354
           HA+  GHTHI +IIENA+WIR+K +LLTHFSSRYH+E+IR+AV KLQSKV+AKV+PLTEG
Sbjct: 301 HAQALGHTHISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEG 353

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy Swiss-Prot
Match: Q8LGU7 (tRNase Z TRZ1 OS=Arabidopsis thaliana OX=3702 GN=TRZ1 PE=1 SV=3)

HSP 1 Score: 339.7 bits (870), Expect = 3.9e-92
Identity = 161/283 (56.89%), Postives = 215/283 (75.97%), Query Frame = 0


Query: 67  RKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHLDHIGGL 126
           +K + +EGY IEG+S+GG ETCII P  + AFDIGRCP RAI Q+F+FI+H+H+DHIGGL
Sbjct: 4   KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63

Query: 127 PMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDTYEMRNN 186
           PMYVA+RGLY + PPT+ VP  IKE VE L E+HR +   EL  +LV LD+G+ + +R +
Sbjct: 64  PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKD 123

Query: 187 LVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLITDTILS 246
           L  +AF+T HVI SQGYV+YS + KLKK+Y+ L G +I+ LK SGVE      ITD+I++
Sbjct: 124 LKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVE------ITDSIIT 183

Query: 247 PEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFEIIENAQ 306
           PEVAFTGDT +DF++D  NADAL+AK+L+ E+TFLD+ VS+EHAR++GH HI EI+ +A+
Sbjct: 184 PEVAFTGDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAE 243

Query: 307 WIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGF 350
              NKAILL HFS+RY +++I  AVS L   +  +V  LT+GF
Sbjct: 244 KFENKAILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy Swiss-Prot
Match: P60193 (Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum OX=4565 GN=ELAC PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.1e-57
Identity = 105/175 (60.00%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 70  VDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHLDHIGGLPMY 129
           +++EGY +EGIS+GG ETC+I P    AFDIGRCP RA+ Q+F+FI+HAHLDHIGGLPMY
Sbjct: 7   LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMY 66

Query: 130 VASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDTYEMRNNLVC 189
           VA+RGLY L PPT+FVP  ++E VE+L ++HR M Q EL+  LV LD+G+ YE+R +L  
Sbjct: 67  VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIGEEYELRRDLKV 126

Query: 190 RAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLITDTI 245
           RAF+T H IPSQGYVIYSV++KLK+ Y+ L G +I++LK SGVE      IT+T+
Sbjct: 127 RAFKTYHTIPSQGYVIYSVKQKLKQDYLGLPGSEIKRLKLSGVE------ITNTV 175

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy Swiss-Prot
Match: B9DNT1 (Ribonuclease Z OS=Staphylococcus carnosus (strain TM300) OX=396513 GN=rnz PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.0e-13
Identity = 67/246 (27.24%), Postives = 111/246 (45.12%), Query Frame = 0


Query: 111 NFVFITHAHLDHIGGLPMYVASRGLY--SLSPPTVFVPPCIKEDVEKLLEIHRTMGQVEL 170
           N +FITH H DHI GLP  + SR        P T+  P  IK  VE  L+   ++ ++  
Sbjct: 57  NHIFITHMHGDHIYGLPGLLTSRSFQGGENKPLTIVGPRGIKNYVETTLQ--ASLSRLNY 116

Query: 171 DVDLVALDVGDTYEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLK------GK 230
            V  + +D    +         A+  NH +PS GY I +     K     L+      G 
Sbjct: 117 PVTFIEID-DQLHYHHEGFTVSAYNLNHGVPSFGYRIEAPTTSGKIDVASLREIGMEPGP 176

Query: 231 QIEKLKKSGVEACLAQLITDTI-----------LSPEVAFTGDTRTDFMLDPRNADALRA 290
           + +++K S      + +  D +           + P++A  GDT      +     A  A
Sbjct: 177 KYQEVKNSD-----SFIFNDKVYQSSDFKGEEKVGPKIAIFGDT---MPCENELKLADNA 236

Query: 291 KILITEATFLDEGVSIEHAREHGHTHIFEIIENAQWIRNKAILLTHFSSRYHIEDIRKAV 338
            +L+ EAT++D   S+  A  H H+HI +++   +   +K  LL H S+RY++ DI    
Sbjct: 237 DLLVHEATYIDGDRSL--ADSHHHSHINDVLHLLEATNSKQALLNHISNRYNLSDIDVIY 289

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy Swiss-Prot
Match: Q58897 (Ribonuclease Z OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=rnz PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-12
Identity = 69/232 (29.74%), Postives = 110/232 (47.41%), Query Frame = 0


Query: 111 NFVFITHAHLDHIGGLPMYVASRGLYSLSPP-TVFVPPCIKEDVEKLLEIHRTMGQVELD 170
           N +FITH H DHI G+P  + S G +       +F P   KE +E  L++     +  + 
Sbjct: 57  NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTHYIEFPIK 116

Query: 171 VDLVALDVGDTYEMRNNLVCRAFETNHVIPSQGYVIYSVRK------KLKKQYMHLKGKQ 230
           V  +      T     N    A+ T H IPS  Y+   ++K      K KK  + + G  
Sbjct: 117 VYEIYTKEPITIYKEENYEIIAYPTEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKI-GPD 176

Query: 231 IEKLKK-SGVEACLAQLITD--TILSPE----VAFTGDT--RTDFMLDPRNADALRAKIL 290
           ++KLK    V+    ++I     +L P+    +A++GDT    DF    +    L   +L
Sbjct: 177 LKKLKNGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKELGCDVL 236

Query: 291 ITEATFLDEGVSIEHAREHGHTHIFEIIENAQWIRNKAILLTHFSSRYHIED 327
           I EATF D   + + A+E+ H+ I + +  A+    KA++LTH S+RY  E+
Sbjct: 237 IHEATFDDS--AKDAAKENMHSTIGDAVNIAKLANVKALILTHISARYDKEE 282

[Close]

BLAST of Cp4.1LG04g02540 vs. NCBI nr
Match: KAG7022978.1 (tRNase Z TRZ2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 701 bits (1810), Expect = 1.09e-254
Identity = 349/353 (98.87%), Postives = 350/353 (99.15%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQISM ISPLTAPQIFPFHQPILQSPKP KIALQRHG PVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISMPISPLTAPQIFPFHQPILQSPKPQKIALQRHGNPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQ+I
Sbjct: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQII 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353

[Close]

BLAST of Cp4.1LG04g02540 vs. NCBI nr
Match: XP_023532022.1 (tRNase Z TRZ2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 691 bits (1783), Expect = 1.13e-250
Identity = 347/353 (98.30%), Postives = 347/353 (98.30%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE      I
Sbjct: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE------I 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 347

[Close]

BLAST of Cp4.1LG04g02540 vs. NCBI nr
Match: XP_022930711.1 (tRNase Z TRZ2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 684 bits (1765), Expect = 6.28e-248
Identity = 344/353 (97.45%), Postives = 344/353 (97.45%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQISM ISPLTAPQIFPFHQPILQSPKP KIALQRHG PVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISMPISPLTAPQIFPFHQPILQSPKPQKIALQRHGNPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE      I
Sbjct: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE------I 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 347

[Close]

BLAST of Cp4.1LG04g02540 vs. NCBI nr
Match: XP_022989110.1 (tRNase Z TRZ2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 684 bits (1764), Expect = 8.91e-248
Identity = 343/353 (97.17%), Postives = 345/353 (97.73%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQISMAISPLTAPQ+FPFHQPILQSPKP KIALQRHG PVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISMAISPLTAPQVFPFHQPILQSPKPQKIALQRHGNPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQV+RKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVHRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE      I
Sbjct: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE------I 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 347

[Close]

BLAST of Cp4.1LG04g02540 vs. NCBI nr
Match: KAG6589282.1 (tRNase Z TRZ2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 674 bits (1739), Expect = 1.78e-238
Identity = 339/348 (97.41%), Postives = 339/348 (97.41%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQISM ISPLTAPQIFPFHQPILQSPKP KIALQRHG PVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISMPISPLTAPQIFPFHQPILQSPKPQKIALQRHGNPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE      I
Sbjct: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE------I 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEG 348
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEG
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEG 342

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy TrEMBL
Match: A0A6J1ERP8 (tRNase Z TRZ2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437109 PE=4 SV=1)

HSP 1 Score: 684 bits (1765), Expect = 3.04e-248
Identity = 344/353 (97.45%), Postives = 344/353 (97.45%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQISM ISPLTAPQIFPFHQPILQSPKP KIALQRHG PVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISMPISPLTAPQIFPFHQPILQSPKPQKIALQRHGNPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE      I
Sbjct: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE------I 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 347

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy TrEMBL
Match: A0A6J1JLG8 (tRNase Z TRZ2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486279 PE=4 SV=1)

HSP 1 Score: 684 bits (1764), Expect = 4.32e-248
Identity = 343/353 (97.17%), Postives = 345/353 (97.73%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQISMAISPLTAPQ+FPFHQPILQSPKP KIALQRHG PVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISMAISPLTAPQVFPFHQPILQSPKPQKIALQRHGNPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQV+RKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVHRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE      I
Sbjct: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE------I 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 347

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy TrEMBL
Match: A0A5A7V7F0 (Ribonuclease Z OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00300 PE=4 SV=1)

HSP 1 Score: 655 bits (1691), Expect = 7.23e-237
Identity = 321/353 (90.93%), Postives = 336/353 (95.18%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQIS+ ISPL  PQ+FPFHQP+L +PKP  +AL  H  PVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISIPISPLRPPQVFPFHQPVLHTPKPQGVALHSHLNPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQVNRKGVDLEGYS+EGISVGGQETC+IIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVNRKGVDLEGYSVEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVF+P CIKEDVEKLLEIHRTMGQVELDVDLVALDVG+T
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFLPACIKEDVEKLLEIHRTMGQVELDVDLVALDVGET 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFET HVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEAC+A  I
Sbjct: 181 YEMRNNLVCRAFETQHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACIAPTI 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDT +DFMLDPRNADALRAK+LITEATFLDE VSIEHAR+HGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTTSDFMLDPRNADALRAKVLITEATFLDEAVSIEHARQHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQ+ VTAKVVPLTEGFKS+Y
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQANVTAKVVPLTEGFKSMY 353

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy TrEMBL
Match: A0A6J1D2G8 (tRNase Z TRZ2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016736 PE=4 SV=1)

HSP 1 Score: 649 bits (1673), Expect = 3.20e-234
Identity = 318/353 (90.08%), Postives = 335/353 (94.90%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQISMAISPLT PQ+FPFHQPI  +PKPH  A Q H  P+NSF DSGLLSTIGVEEEYRR
Sbjct: 1   MQISMAISPLTPPQLFPFHQPIFHTPKPHGFAFQTHVNPLNSFTDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQVNRKGVDLEGYSIEGISVGGQETC+I+PEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCVIVPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVFVPPC++EDVEKLL+IHRTMGQV+LDVDLVALDVG+T
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCVREDVEKLLDIHRTMGQVDLDVDLVALDVGET 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAF+T+HVIPSQGYVIYSVRKKLKKQY+HLKGKQIEKLKKSGVE      I
Sbjct: 181 YEMRNNLVCRAFKTHHVIPSQGYVIYSVRKKLKKQYIHLKGKQIEKLKKSGVE------I 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDT TDFMLDPRNADALRAK+LITEATFLDEG SIEHAR+HGHTH+FE
Sbjct: 241 TDTILSPEVAFTGDTTTDFMLDPRNADALRAKVLITEATFLDEGASIEHARQHGHTHLFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYH+EDIRKAVSKLQSKVTAKVVPLTEGFKSVY
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHLEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 347

[Close]

BLAST of Cp4.1LG04g02540 vs. ExPASy TrEMBL
Match: A0A1S3BN27 (ribonuclease Z, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491364 PE=4 SV=1)

HSP 1 Score: 642 bits (1657), Expect = 8.77e-232
Identity = 318/353 (90.08%), Postives = 332/353 (94.05%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFPFHQPILQSPKPHKIALQRHGTPVNSFRDSGLLSTIGVEEEYRR 60
           MQIS+ ISPL  PQ+FPFHQP+L +PKP  +AL  H  PVNSFRDSGLLSTIGVEEEYRR
Sbjct: 1   MQISIPISPLRPPQVFPFHQPVLHTPKPQGVALHSHLNPVNSFRDSGLLSTIGVEEEYRR 60

Query: 61  ARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120
           ARSQVNRKGVDLEGYS+EGISVGGQETC+IIPEFKCAFDIGRCPSRAIQQNFVFITHAHL
Sbjct: 61  ARSQVNRKGVDLEGYSVEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVFITHAHL 120

Query: 121 DHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDT 180
           DHIGGLPMYVASRGLYSLSPPTVF+P CIKEDVEKLLEIHRTMGQVELDVDLVALDVG+T
Sbjct: 121 DHIGGLPMYVASRGLYSLSPPTVFLPACIKEDVEKLLEIHRTMGQVELDVDLVALDVGET 180

Query: 181 YEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLI 240
           YEMRNNLVCRAFET HVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE      I
Sbjct: 181 YEMRNNLVCRAFETQHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVE------I 240

Query: 241 TDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFE 300
           TDTILSPEVAFTGDT +DFMLDPRNADALRAK+LITEATFLDE VSIEHAR+HGHTHIFE
Sbjct: 241 TDTILSPEVAFTGDTTSDFMLDPRNADALRAKVLITEATFLDEAVSIEHARQHGHTHIFE 300

Query: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGFKSVY 353
           IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQ+ VTAKVVPLTEGFKS+Y
Sbjct: 301 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQANVTAKVVPLTEGFKSMY 347

[Close]

BLAST of Cp4.1LG04g02540 vs. TAIR 10
Match: AT2G04530.1 (Metallo-hydrolase/oxidoreductase superfamily protein )

HSP 1 Score: 491.1 bits (1263), Expect = 7.4e-139
Identity = 253/365 (69.32%), Postives = 301/365 (82.47%), Query Frame = 0


Query: 1   MQISMAISPLTAPQIFP---FHQPILQSPKPHKIALQ-----RHGTPVNSFRDSGLLSTI 60
           MQ+S +  P++ P+IFP    H+P + +   H++A Q     RH   V+  + SG  S+I
Sbjct: 1   MQLSSSF-PISPPKIFPSTKHHKPPVIT---HQLAAQIQSNRRHF--VSPVKVSGYFSSI 60

Query: 61  G----VEEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAI 120
                 EEEYR+AR+ VNRKGV+LE Y+IEGISVGG ETC+I+PE KC FDIGRCPSRAI
Sbjct: 61  SRAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAI 120

Query: 121 QQNFVFITHAHLDHIGGLPMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVEL 180
           QQ F+FITHAHLDHIGGLPMYVASRGLY+L PP +FVPP IKEDVEKLLEIHRTMGQVEL
Sbjct: 121 QQKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVEL 180

Query: 181 DVDLVALDVGDTYEMRNNLVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLK 240
           +V+L+ L VG+TYE+RN++V R F T+HVIPSQGYVIYSVRKKL+KQY HLKGKQIEK+K
Sbjct: 181 NVELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIK 240

Query: 241 KSGVEACLAQLITDTILSPEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIE 300
           KSGVE      ITDTILSPE+AFTGDT +++MLDPRNADALRAK+LITEATFLDE  S E
Sbjct: 241 KSGVE------ITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTE 300

Query: 301 HAREHGHTHIFEIIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEG 354
           HA+  GHTHI +IIENA+WIR+K +LLTHFSSRYH+E+IR+AV KLQSKV+AKV+PLTEG
Sbjct: 301 HAQALGHTHISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEG 353

[Close]

BLAST of Cp4.1LG04g02540 vs. TAIR 10
Match: AT1G74700.1 (tRNAse Z1 )

HSP 1 Score: 339.7 bits (870), Expect = 2.7e-93
Identity = 161/283 (56.89%), Postives = 215/283 (75.97%), Query Frame = 0


Query: 67  RKGVDLEGYSIEGISVGGQETCIIIPEFKCAFDIGRCPSRAIQQNFVFITHAHLDHIGGL 126
           +K + +EGY IEG+S+GG ETCII P  + AFDIGRCP RAI Q+F+FI+H+H+DHIGGL
Sbjct: 4   KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63

Query: 127 PMYVASRGLYSLSPPTVFVPPCIKEDVEKLLEIHRTMGQVELDVDLVALDVGDTYEMRNN 186
           PMYVA+RGLY + PPT+ VP  IKE VE L E+HR +   EL  +LV LD+G+ + +R +
Sbjct: 64  PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKD 123

Query: 187 LVCRAFETNHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEACLAQLITDTILS 246
           L  +AF+T HVI SQGYV+YS + KLKK+Y+ L G +I+ LK SGVE      ITD+I++
Sbjct: 124 LKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVE------ITDSIIT 183

Query: 247 PEVAFTGDTRTDFMLDPRNADALRAKILITEATFLDEGVSIEHAREHGHTHIFEIIENAQ 306
           PEVAFTGDT +DF++D  NADAL+AK+L+ E+TFLD+ VS+EHAR++GH HI EI+ +A+
Sbjct: 184 PEVAFTGDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAE 243

Query: 307 WIRNKAILLTHFSSRYHIEDIRKAVSKLQSKVTAKVVPLTEGF 350
              NKAILL HFS+RY +++I  AVS L   +  +V  LT+GF
Sbjct: 244 KFENKAILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280

[Close]

BLAST of Cp4.1LG04g02540 vs. TAIR 10
Match: AT2G01730.1 (cleavage and polyadenylation specificity factor 73 kDa subunit-II )

HSP 1 Score: 45.8 bits (107), Expect = 8.2e-05
Identity = 26/96 (27.08%), Postives = 46/96 (47.92%), Query Frame = 0


Query: 113 VFITHAHLDHIGGLPMYV---ASRGLYSLSPPTVFVPPCIKEDVEKLL-------EIHRT 172
           + ITH H+DH+G LP +       G   +S PT  + P + ED  +++       E+  T
Sbjct: 63  IIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTT 122

Query: 173 MGQVELDVDLVALDVGDTYEMRNNLVCRAFETNHVI 199
                    ++A+D+  T ++  +L  RA+   HV+
Sbjct: 123 THIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVL 158

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g02540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L633	1.0e-137	69.32	tRNase Z TRZ2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TRZ2 PE=2 SV=1	[more]
Q8LGU7	3.9e-92	56.89	tRNase Z TRZ1 OS=Arabidopsis thaliana OX=3702 GN=TRZ1 PE=1 SV=3	[more]
P60193	1.1e-57	60.00	Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum OX=4565 GN=ELAC PE=1 SV=1	[more]
B9DNT1	8.0e-13	27.24	Ribonuclease Z OS=Staphylococcus carnosus (strain TM300) OX=396513 GN=rnz PE=3 S...	[more]
Q58897	2.3e-12	29.74	Ribonuclease Z OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / ...	[more]

BLAST of Cp4.1LG04g02540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022978.1	1.09e-254	98.87	tRNase Z TRZ2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023532022.1	1.13e-250	98.30	tRNase Z TRZ2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022930711.1	6.28e-248	97.45	tRNase Z TRZ2, chloroplastic [Cucurbita moschata]	[more]
XP_022989110.1	8.91e-248	97.17	tRNase Z TRZ2, chloroplastic [Cucurbita maxima]	[more]
KAG6589282.1	1.78e-238	97.41	tRNase Z TRZ2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG04g02540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERP8	3.04e-248	97.45	tRNase Z TRZ2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437109 PE=4 ...	[more]
A0A6J1JLG8	4.32e-248	97.17	tRNase Z TRZ2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486279 PE=4 SV...	[more]
A0A5A7V7F0	7.23e-237	90.93	Ribonuclease Z OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00300...	[more]
A0A6J1D2G8	3.20e-234	90.08	tRNase Z TRZ2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016736 PE=4...	[more]
A0A1S3BN27	8.77e-232	90.08	ribonuclease Z, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491364 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g02540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04530.1	7.4e-139	69.32	Metallo-hydrolase/oxidoreductase superfamily protein	[more]
AT1G74700.1	2.7e-93	56.89	tRNAse Z1	[more]
AT2G01730.1	8.2e-05	27.08	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001279	Metallo-beta-lactamase	PFAM	PF12706	Lactamase_B_2	coord: 111..318 e-value: 1.8E-9 score: 37.5
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	GENE3D	3.60.15.10		coord: 75..350 e-value: 5.1E-54 score: 185.3
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	SUPERFAMILY	56281	Metallo-hydrolase/oxidoreductase	coord: 92..337
None	No IPR available	PANTHER	PTHR46504:SF1	TRNASE Z TRZ2, CHLOROPLASTIC	coord: 32..353
None	No IPR available	PANTHER	PTHR46504	FAMILY NOT NAMED	coord: 32..353
None	No IPR available	CDD	cd16272	RNaseZ_MBL-fold	coord: 74..278 e-value: 4.26542E-30 score: 111.586

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g02540.1	Cp4.1LG04g02540.1	mRNA