Cp4.1LG03g17540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g17540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Protein phosphatase 2C 29-like
Location	Cp4.1LG03: 12618710 .. 12620842 (+)
RNA-Seq Expression	Cp4.1LG03g17540
Synteny	Cp4.1LG03g17540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGGTCGTTCAATCGATTCCTGACAGTGTTACGCATTGCCCGCTCTCTAGGTATTTCCTCTCTTCCTTCGAATTTTCGCTTGTTTTTATTTTTTCCCTCTTTTGATCGATTATTTTCTGCTACGAGTTTAATTTTCGTATAAGTTTTGTTTAATCTGCTCATGATCTTTGTTTTGGTTTTAAACGTCTTGGTTGGAAATCATTCATTCTCTTTAATCGCGAAAAGACGTGGAATTCATGGTTATTCAAAAGTCGATTTCGTTCTCAGAGATATTGATAGATTGCTGTCGAACTTTTAAATTGGAAAATTCAAATTTTAGCATCTAGTCAATCGGTAGGGTCTTGGAATTTAGGATTCACCGACGGAAAATCATGAAGGTGGAGTCTCTAGATTGTACAAAATATGGCGTTGGTTAAAACTTCGCGTTTGATTCAAATTAGGTGCTGCAGTTTTTTTAGGATTATTGAATTCAATTTTCTGGCGGTTTACTTCACAATAGAGATAATAGAGGTGTATGGTGTCCAGTTTCCCTCAATATTTGTCAACCATTCTGTTGGAAACTGGAATCATTCCTTCGCTCTATCATAATCTGGGAGTTTAGTTGCGATGGTACAGTTTTTTTTTTATACATGCTTGAAATAGCAGGTGCATTATTTTACCATATAGTTTCGAGGGTCTGCTAGTTGGTAAATTTTGCGCCTAAATGTTTGGGACCTGGAGTTTAGCAGAATCGAGTCTCTCTTCCTGCTTGGTGGACAGATTTTGATGTATCTCTAAGTTTGAAAAAGTTGCTTGCTTTGTTTTGTTCAACATGTCTAAAATTTTTATGGCTTTGATTCGAGAATATATTTTTAATTGCTATGGAATTTACAAATTATCACTGCATATAAAATGACCTGTTTAAAACTGTGACTAAAAGACCAATCAGGATAAGTATTGTCAAGATAAGGTTGGGAAGCTATATTTGGATTAAGTTATTATTCTTATTTTATCATGTTATTGTTACAAAAAATGCATGTCGTAAATTTTTTCCTGGTTAGAATGGGAATAAATGGAGTAATGAATTAGTAAATAAGCTGGTTGCCTGTGCTTTTCTCTCTCTCTTATTCGTTTCAATTGTTTCGTTTCTCTATTCTGCTCTAGGTGTCCTATACTATAGATCATAAAAGAGTTCTAGTTGATCAAACTCCAGGCCCCACATAAGTGCACCATAAAGGAGTTTTGTGCATTCAATATAGGAAATGTGATTAGAGTGCATTAGAACAAGCAGTTTAGTTTAAATTTATTATGTCAAGGTTCATACCTCCTTTTATTGTGCTTAAGTAATTTTTTTGAAGTGGAGGGCTTCTTCAAACAACAAGGAGGGGTGTGATTGTGTTTGGAAATTTTGCTCGTATATTTTGTTGCCATAAATTTCCAGTGCCATCAATAGATTATTGCATAGCTTCTGTACTTTTGACAAGCTAGAATAACATAGTGAGTTACTCGCAGAAAATAAAGCAGAGTGCCATTTTATGGATATAACAGTACCTGGTGGGAATGATCCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATTTCTTACGAGGAACCAGAAACAGCTCTCTCTTCAAAGCGATCATCTGGAAAGCTCAGTAGCGAAAACCTCAATCTGGTCAACGGGATAGACCACAATCTGGTGGAAGGGAAAGAATACGATGTAGAGAAATATAGATCTGAGCTGATAGCTATTTCCTTTCTTGAGTCACCACCTGAAATTGGAAGTGGAACCGTGACCGAACTCAAGGGTTAGTGCCTGGACGTCCGTTATCATAAATGTATACGCTCTTATGTAAAAATGGTACTAATCTAAGTTCATGGATGTGTTGTTATGACTGTAGAGCAATGCTGTCCATGTTCGTTGTTTTTGTAACATAAACCCTCTGCACGGGTTGTCTGTCTGTACTATCTTGTGGAAACTTATTGCTGTGTGAACCCAATGAATGAACTTGGTACTCAGCATTTTTCTTATACATTTATGTCATTTTATTGTAATATCATACAGTGGTGCCTTAAATATTGTATATAGTTTATACATTGTATGTTAATAGTTTCAAACTAATTATTGTTTCAAGTAGTTTATAGTTAAGA

mRNA sequence

GTCCGGTCGTTCAATCGATTCCTGACAGTGTTACGCATTGCCCGCTCTCTAGAAAATAAAGCAGAGTGCCATTTTATGGATATAACAGTACCTGGTGGGAATGATCCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATTTCTTACGAGGAACCAGAAACAGCTCTCTCTTCAAAGCGATCATCTGGAAAGCTCAGTAGCGAAAACCTCAATCTGGTCAACGGGATAGACCACAATCTGGTGGAAGGGAAAGAATACGATGTAGAGAAATATAGATCTGAGCTGATAGCTATTTCCTTTCTTGAGTCACCACCTGAAATTGGAAGTGGAACCGTGACCGAACTCAAGGGTTAGTGCCTGGACGTCCGTTATCATAAATGTATACGCTCTTATGTAAAAATGGTACTAATCTAAGTTCATGGATGTGTTGTTATGACTGTAGAGCAATGCTGTCCATGTTCGTTGTTTTTGTAACATAAACCCTCTGCACGGGTTGTCTGTCTGTACTATCTTGTGGAAACTTATTGCTGTGTGAACCCAATGAATGAACTTGGTACTCAGCATTTTTCTTATACATTTATGTCATTTTATTGTAATATCATACAGTGGTGCCTTAAATATTGTATATAGTTTATACATTGTATGTTAATAGTTTCAAACTAATTATTGTTTCAAGTAGTTTATAGTTAAGA

Coding sequence (CDS)

GTCCGGTCGTTCAATCGATTCCTGACAGTGTTACGCATTGCCCGCTCTCTAGAAAATAAAGCAGAGTGCCATTTTATGGATATAACAGTACCTGGTGGGAATGATCCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATTTCTTACGAGGAACCAGAAACAGCTCTCTCTTCAAAGCGATCATCTGGAAAGCTCAGTAGCGAAAACCTCAATCTGGTCAACGGGATAGACCACAATCTGGTGGAAGGGAAAGAATACGATGTAGAGAAATATAGATCTGAGCTGATAGCTATTTCCTTTCTTGAGTCACCACCTGAAATTGGAAGTGGAACCGTGACCGAACTCAAGGGTTAG

Protein sequence

VRSFNRFLTVLRIARSLENKAECHFMDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHNLVEGKEYDVEKYRSELIAISFLESPPEIGSGTVTELKG

Homology

[Close]

BLAST of Cp4.1LG03g17540 vs. NCBI nr
Match: KAG6582528.1 (hypothetical protein SDJN03_22530, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (440), Expect = 4.00e-53
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 26  MDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHNLVEGKE 85
           MDITVPGGNDPEEVTRESLIAISYEEPET LSSKRSSGKLSSENLNLVNGIDHNLVEGKE
Sbjct: 1   MDITVPGGNDPEEVTRESLIAISYEEPETTLSSKRSSGKLSSENLNLVNGIDHNLVEGKE 60

Query: 86  YDVEKYRSELIAISFLESPPEIGSGTVTELK 116
           YDVEKYRSELIAISFLESPPEIGSGTVTELK
Sbjct: 61  YDVEKYRSELIAISFLESPPEIGSGTVTELK 91

[Close]

BLAST of Cp4.1LG03g17540 vs. NCBI nr
Match: KAG7018913.1 (hypothetical protein SDJN02_20787, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (440), Expect = 1.24e-52
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 26  MDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHNLVEGKE 85
           MDITVPGGNDPEEVTRESLIAISYEEPET LSSKRSSGKLSSENLNLVNGIDHNLVEGKE
Sbjct: 1   MDITVPGGNDPEEVTRESLIAISYEEPETTLSSKRSSGKLSSENLNLVNGIDHNLVEGKE 60

Query: 86  YDVEKYRSELIAISFLESPPEIGSGTVTELK 116
           YDVEKYRSELIAISFLESPPEIGSGTVTELK
Sbjct: 61  YDVEKYRSELIAISFLESPPEIGSGTVTELK 91

[Close]

BLAST of Cp4.1LG03g17540 vs. NCBI nr
Match: XP_022974968.1 (uncharacterized protein LOC111473815 [Cucurbita maxima])

HSP 1 Score: 129 bits (323), Expect = 5.95e-36
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 20  KAECHFMDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHN 79
           + ECH+MDITVPG N  EEVTRESLIAISY EPE+ALSSKR SGKL+S+NLNLV      
Sbjct: 19  QTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLV------ 78

Query: 80  LVEGKEYDV-EKYRSELIAISFLESPPEIGSGTVTELKG 117
             EGKE+D  EKYRSELIAISFLESPPEIGS  V +LKG
Sbjct: 79  --EGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG 109

[Close]

BLAST of Cp4.1LG03g17540 vs. NCBI nr
Match: XP_022963288.1 (uncharacterized protein LOC111463263 [Cucurbita moschata])

HSP 1 Score: 127 bits (320), Expect = 1.70e-35
Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 20  KAECHFMDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHN 79
           + ECH+MDITVPG N  EEVTRESLIAISY EPE+ALSSKR SGKL+S+NLNLV      
Sbjct: 19  QTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLV------ 78

Query: 80  LVEGKEYDV-EKYRSELIAISFLESPPEIGSGTVTELKG 117
             EGKE+D  EKYRSELI+ISFLESPPEIGS  V +LKG
Sbjct: 79  --EGKEFDADEKYRSELISISFLESPPEIGSVPVGKLKG 109

[Close]

BLAST of Cp4.1LG03g17540 vs. NCBI nr
Match: KAA0049081.1 (hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK17482.1 hypothetical protein E5676_scaffold434G003470 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 2.69e-35
Identity = 70/85 (82.35%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 26  MDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHNLVEGKE 85
           MDITVPG N PEEVTRESLI+ISYEEPET LSSKR S KLSSEN+NL NGI+HN VEGKE
Sbjct: 1   MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLANGINHNQVEGKE 60

Query: 86  YDV-EKYRSELIAISFLESPPEIGS 109
           YD  EK+RSELIAISFLES PE GS
Sbjct: 61  YDGDEKFRSELIAISFLESLPETGS 85

[Close]

BLAST of Cp4.1LG03g17540 vs. ExPASy TrEMBL
Match: A0A6J1IHW2 (uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 2.88e-36
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 20  KAECHFMDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHN 79
           + ECH+MDITVPG N  EEVTRESLIAISY EPE+ALSSKR SGKL+S+NLNLV      
Sbjct: 19  QTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLV------ 78

Query: 80  LVEGKEYDV-EKYRSELIAISFLESPPEIGSGTVTELKG 117
             EGKE+D  EKYRSELIAISFLESPPEIGS  V +LKG
Sbjct: 79  --EGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG 109

[Close]

BLAST of Cp4.1LG03g17540 vs. ExPASy TrEMBL
Match: A0A6J1HHB9 (uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC111463263 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 8.24e-36
Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 20  KAECHFMDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHN 79
           + ECH+MDITVPG N  EEVTRESLIAISY EPE+ALSSKR SGKL+S+NLNLV      
Sbjct: 19  QTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLV------ 78

Query: 80  LVEGKEYDV-EKYRSELIAISFLESPPEIGSGTVTELKG 117
             EGKE+D  EKYRSELI+ISFLESPPEIGS  V +LKG
Sbjct: 79  --EGKEFDADEKYRSELISISFLESPPEIGSVPVGKLKG 109

[Close]

BLAST of Cp4.1LG03g17540 vs. ExPASy TrEMBL
Match: A0A5A7U641 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003470 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.30e-35
Identity = 70/85 (82.35%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 26  MDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHNLVEGKE 85
           MDITVPG N PEEVTRESLI+ISYEEPET LSSKR S KLSSEN+NL NGI+HN VEGKE
Sbjct: 1   MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLANGINHNQVEGKE 60

Query: 86  YDV-EKYRSELIAISFLESPPEIGS 109
           YD  EK+RSELIAISFLES PE GS
Sbjct: 61  YDGDEKFRSELIAISFLESLPETGS 85

[Close]

BLAST of Cp4.1LG03g17540 vs. ExPASy TrEMBL
Match: A0A0A0L967 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 2.95e-35
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 26  MDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGKLSSENLNLVNGIDHNLVEGKE 85
           MD TVPG N PEEVTRESLI+ISYEEPET LSS + S K+S EN+NL NGI+HN +EGKE
Sbjct: 1   MDTTVPGRNAPEEVTRESLISISYEEPETVLSSNQPSEKISRENINLANGINHNQMEGKE 60

Query: 86  YDV-EKYRSELIAISFLESPPEIGSGTVTELKG 117
           YD  EK+RSELIAISFLES PE GS  V ELKG
Sbjct: 61  YDGDEKFRSELIAISFLESLPETGSVPVAELKG 93

[Close]

BLAST of Cp4.1LG03g17540 vs. ExPASy TrEMBL
Match: A0A2N9IZZ1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57625 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.84e-13
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 17  LENKAECHFMDITVPGGNDPEEVTRESLIAISYEEPETALSSKRSSGK---LSSENLNLV 76
           L ++A C FMD TVPG   PEEVTRESLIAISY  P+   +SK SS K   L+SENL  V
Sbjct: 20  LTDQAGCRFMDKTVPGKEAPEEVTRESLIAISYPVPDKVPTSKLSSEKSEKLNSENL--V 79

Query: 77  NGIDHNLVEGKEYDVEKYRSELIAISFLESPPEIGSGTVT--ELKG 117
             ID N         EK RSELI+IS+ +S  E G   V+  ELKG
Sbjct: 80  EAIDSN-------GEEKCRSELISISYTQSS-ETGGLPVSPRELKG 115

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g17540 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g17540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582528.1	4.00e-53	98.90	hypothetical protein SDJN03_22530, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018913.1	1.24e-52	98.90	hypothetical protein SDJN02_20787, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022974968.1	5.95e-36	73.74	uncharacterized protein LOC111473815 [Cucurbita maxima]	[more]
XP_022963288.1	1.70e-35	72.73	uncharacterized protein LOC111463263 [Cucurbita moschata]	[more]
KAA0049081.1	2.69e-35	82.35	hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK174...	[more]

BLAST of Cp4.1LG03g17540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHW2	2.88e-36	73.74	uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815...	[more]
A0A6J1HHB9	8.24e-36	72.73	uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]
A0A5A7U641	1.30e-35	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L967	2.95e-35	74.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1	[more]
A0A2N9IZZ1	1.84e-13	52.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57625 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g17540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35282	F5D14.24 PROTEIN	coord: 19..107
None	No IPR available	PANTHER	PTHR35282:SF2	F5D14.24 PROTEIN	coord: 19..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g17540.1	Cp4.1LG03g17540.1	mRNA