Cp4.1LG03g16390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g16390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	arabinogalactan peptide 20-like
Location	Cp4.1LG03: 13326153 .. 13328244 (+)
RNA-Seq Expression	Cp4.1LG03g16390
Synteny	Cp4.1LG03g16390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGTAAATAAATAAATATGAAATTAGTTTTTTTAAAAACCACATGAAGAAGATTTTAAAATTTTGATTTTCTTATTTTGAAAAAATAAAATAGTTATCTAGAACTAAGTCTCTTAACAGTTTTAAAAAAAAAAGTAGGGAACTTAATTTTAGTTTCACAAGGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAGGAAAAAAAGAAATTGTGGAGCCCACAGCGGGTTTTGCCGGTTTGTTCTCTAATTTATCTATAAAAAGCAAATCACCACATAATCCTCCGCCCCACTACTCTTCTCCTTCTCTTTCTTCGTTCTTCTTCATCATTTGATCCGAGCTTCCAGAGATTTGGTTGTTCCGAGAGGGAGACCATCCATGGCGTCCTCTAATTCTACTTCTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCGTTGACGCCCACTCTTCGGTCCCTGCTCCCGCTCCCGCTCCCGCTAGCGATGGTAACTACATTCCTCCTTTTTTATTGATACCGAAGAATCTAGATCTTTCTTTCAATTCGGGTAGGAACATAATAGTTTTCGAATCTGAAGCTGATTGTGGACATTTTTGTGTGAAATCAGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCTACAACTTTTTTCTCAATTGAATTCTAGGATTGTAGCAATGTAGGCGCTGTTTGTGGACGTTTTGAGAAGGAACGAGGCCCTACTTTCTATCTCGTTGTCATAAATGTAGGTTTCAGAGGAACATGTTCATATTGGGTGTCGCAGATTTTGATCCATTGGTCTAATTATTCATTTGTTTATTCCATTACCTTTTTCTCTTCTTTTATCATGATTTATACACTGGATCCATTTTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTCAAACCCCACCATTCTTCTTCTAATAGGAGGATTATGTCCTCAGGCAAAACCAATCAAAATAAGGAAGCAGAAAGAAAGCACTTTCAAATTTGAATAGGGAAATGGATCATCTTTTTCATAGACAACTACAGATTCCCCTCCCCTCCTTATTTCTGGTTGGTTGCTAATTCATTACCTCCACGACATGTTTGTCACAACAACCGATTTGAGGAACTTAGAATCTGTTTCAGATGACTTGCTTTAAACTTCTGGACGCTTGAAAAGTCGATCAAAACAGACTCTTAATTGAACTATAAATATCAAACCAAAGACCCCTAAGACAAAATAGTAAATTTTTATTTAATTCAAAGTTCATGTACATCTAATCTCGTGTTTGAACAAATCGTTGGGTGAAAAACTGGACATGAGAGGTCTCACAATAGGGGAGATTTTTGTTTCATTAGAAGTTGCTGTCTTAACCATCCAAAGGTCTTTGGCCAAAAGAATCTGTGGAGAGGAGATTTCTTGAGCTTACATACATAGGGACGGCACATTCCAAGTGACACTCCTTCTATTCAGTCATCCTTTCTTTTGGGTGTCTGTGATACAGAGCATACTTCATAACTTCGTAGAAGGAGACGACTATCCCGACAGAGGGACCGGCACGACCAACCCGGGGACCAATTCCAGTAAACATTCCTTTGATTCCTCCATCCCTGTCCAAAGTATATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAA

mRNA sequence

TTGGTAAATAAATAAATATGAAATTAGTTTTTTTAAAAACCACATGAAGAAGATTTTAAAATTTTGATTTTCTTATTTTGAAAAAATAAAATAGTTATCTAGAACTAAGTCTCTTAACAGTTTTAAAAAAAAAAGTAGGGAACTTAATTTTAGTTTCACAAGGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAGGAAAAAAAGAAATTGTGGAGCCCACAGCGGGTTTTGCCGGTTTGTTCTCTAATTTATCTATAAAAAGCAAATCACCACATAATCCTCCGCCCCACTACTCTTCTCCTTCTCTTTCTTCGTTCTTCTTCATCATTTGATCCGAGCTTCCAGAGATTTGGTTGTTCCGAGAGGGAGACCATCCATGGCGTCCTCTAATTCTACTTCTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCGTTGACGCCCACTCTTCGGTCCCTGCTCCCGCTCCCGCTCCCGCTAGCGATGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCTACAACTTTTTTCTCAATTGAATTCTAGGATTGTAGCAATGTAGGCGCTGTTTGTGGACGTTTTGAGAAGGAACGAGGCCCTACTTTCTATCTCGTTGTCATAAATGTAGGTTTCAGAGGAACATGTTCATATTGGGTGTCGCAGATTTTGATCCATTGGTCTAATTATTCATTTGTTTATTCCATTACCTTTTTCTCTTCTTTTATCATGATTTATACACTGGATCCATTTTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTCAAACCCCACCATTCTTCTTCTAATAGGAGGATTATGTCCTCAGGCAAAACCAATCAAAATAAGGAAGCAGAAAGAAAGCACTTTCAAATTTGAATAGGGAAATGGATCATCTTTTTCATAGACAACTACAGATTCCCCTCCCCTCCTTATTTCTGGTTGGTTGCTAATTCATTACCTCCACGACATGTTTGTCACAACAACCGATTTGAGGAACTTAGAATCTGTTTCAGATGACTTGCTTTAAACTTCTGGACGCTTGAAAAGTCGATCAAAACAGACTCTTAATTGAACTATAAATATCAAACCAAAGACCCCTAAGACAAAATAGTAAATTTTTATTTAATTCAAAGTTCATGTACATCTAATCTCGTGTTTGAACAAATCGTTGGGTGAAAAACTGGACATGAGAGGTCTCACAATAGGGGAGATTTTTGTTTCATTAGAAGTTGCTGTCTTAACCATCCAAAGGTCTTTGGCCAAAAGAATCTGTGGAGAGGAGATTTCTTGAGCTTACATACATAGGGACGGCACATTCCAAGTGACACTCCTTCTATTCAGTCATCCTTTCTTTTGGGTGTCTGTGATACAGAGCATACTTCATAACTTCGTAGAAGGAGACGACTATCCCGACAGAGGGACCGGCACGACCAACCCGGGGACCAATTCCAGTAAACATTCCTTTGATTCCTCCATCCCTGTCCAAAGTATATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAAGTATAATGAAACTCATTGCCCAAA

Coding sequence (CDS)

ATGGCGTCCTCTAATTCTACTTCTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCGTTGACGCCCACTCTTCGGTCCCTGCTCCCGCTCCCGCTCCCGCTAGCGATGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCTACAACTTTTTTCTCAATTGA

Protein sequence

MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

Homology

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-14
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          MAS NS +      F  F+ +  ++  L  A S   APAPAP SDGTSIDQG+AY+LM+V
Sbjct: 1  MASRNSVTG-----FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVV 60

Query: 61 ALVLTYLIHPLDA-SSYNFF 80
          ALVLTYLIHPLDA SSY+FF
Sbjct: 61 ALVLTYLIHPLDASSSYSFF 73

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-14
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          MAS NS +     +   F  +  ++SP   A S   APAP+P SDGTSIDQG+AY+LM+V
Sbjct: 1  MASRNSVA-----VIALFAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVV 60

Query: 61 ALVLTYLIHPLDA--SSYNFF 80
          ALVLTYLIHPLDA  SSY FF
Sbjct: 61 ALVLTYLIHPLDASSSSYTFF 74

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.0e-13
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 6  STSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLT 65
          S SR F G+ T  ++I  IL P+  AH+   APAPAP SDGT+IDQG+AYVLMLVALVLT
Sbjct: 2  SGSRLFFGVSTIVSIIFAILLPM--AHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLT 61

Query: 66 YLIH 70
          YLIH
Sbjct: 62 YLIH 63

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 14 LFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH 70
          +   F +I  IL P+  +HSS  +PAPAP SDGTSIDQG+AYVLM+VAL LTY IH
Sbjct: 10 ILAVFVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of Cp4.1LG03g16390 vs. NCBI nr
Match: XP_023528757.1 (arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo] >KAG7019041.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156 bits (395), Expect = 6.38e-48
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 81

[Close]

BLAST of Cp4.1LG03g16390 vs. NCBI nr
Match: XP_022924337.1 (arabinogalactan peptide 16-like [Cucurbita moschata] >KAG6582645.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151 bits (382), Expect = 6.52e-46
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPA--SDGTSIDQGVAYVLM 60
          MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPA  SDGTSIDQGVAYVLM
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFFLN 81
          LVALVLTYLIHPLDASSYNFFLN
Sbjct: 61 LVALVLTYLIHPLDASSYNFFLN 83

[Close]

BLAST of Cp4.1LG03g16390 vs. NCBI nr
Match: XP_022979386.1 (arabinogalactan peptide 20-like [Cucurbita maxima])

HSP 1 Score: 145 bits (366), Expect = 1.80e-43
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVP--APAPAPASDGTSIDQGVAYVLM 60
          MASSNST RAFSGLFTFFTLILFILSPL+DAHSSVP  APAPAPASDGTSIDQGVAYVLM
Sbjct: 1  MASSNSTFRAFSGLFTFFTLILFILSPLIDAHSSVPSPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFFLN 81
          LVALVLTYLIHPLDASS NFFLN
Sbjct: 61 LVALVLTYLIHPLDASSNNFFLN 83

[Close]

BLAST of Cp4.1LG03g16390 vs. NCBI nr
Match: XP_022147463.1 (arabinogalactan peptide 20-like [Momordica charantia])

HSP 1 Score: 140 bits (352), Expect = 2.32e-41
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          MASS STSRAFS LFT F LI FI+SPLVDAHSS PAPAPAPASDGTSIDQG+AYVLML+
Sbjct: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 81

[Close]

BLAST of Cp4.1LG03g16390 vs. NCBI nr
Match: XP_038905636.1 (arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 135 bits (340), Expect = 1.44e-39
Identity = 72/81 (88.89%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          M SSNSTSRAFSGLFTFF LI FILSPLVDA    PAPAPAPASDGTSIDQG+AYVLMLV
Sbjct: 1  MESSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLV 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSY+FFLN
Sbjct: 61 ALVLTYLIHPLDASSYSFFLN 78

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy TrEMBL
Match: A0A6J1E8M6 (arabinogalactan peptide 16-like OS=Cucurbita moschata OX=3662 GN=LOC111431859 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 3.16e-46
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPA--SDGTSIDQGVAYVLM 60
          MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPA  SDGTSIDQGVAYVLM
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFFLN 81
          LVALVLTYLIHPLDASSYNFFLN
Sbjct: 61 LVALVLTYLIHPLDASSYNFFLN 83

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy TrEMBL
Match: A0A6J1IQM6 (arabinogalactan peptide 20-like OS=Cucurbita maxima OX=3661 GN=LOC111479127 PE=4 SV=1)

HSP 1 Score: 145 bits (366), Expect = 8.72e-44
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVP--APAPAPASDGTSIDQGVAYVLM 60
          MASSNST RAFSGLFTFFTLILFILSPL+DAHSSVP  APAPAPASDGTSIDQGVAYVLM
Sbjct: 1  MASSNSTFRAFSGLFTFFTLILFILSPLIDAHSSVPSPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFFLN 81
          LVALVLTYLIHPLDASS NFFLN
Sbjct: 61 LVALVLTYLIHPLDASSNNFFLN 83

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy TrEMBL
Match: A0A6J1D1D7 (arabinogalactan peptide 20-like OS=Momordica charantia OX=3673 GN=LOC111016381 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 1.13e-41
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          MASS STSRAFS LFT F LI FI+SPLVDAHSS PAPAPAPASDGTSIDQG+AYVLML+
Sbjct: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 81

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy TrEMBL
Match: A0A0A0L7A0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120410 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 1.93e-37
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          M S NSTSRAF  LFTFF+LI FILSPLVDA    PAPAPAP+SDGTSIDQG+AYVLML+
Sbjct: 1  MESFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAPAPAPSSDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 78

[Close]

BLAST of Cp4.1LG03g16390 vs. ExPASy TrEMBL
Match: A0A6J1IAU1 (arabinogalactan peptide 16-like OS=Cucurbita maxima OX=3661 GN=LOC111473327 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 5.11e-36
Identity = 65/80 (81.25%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 2  ASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVA 61
          +SS+ST  AFSG FT F LI FIL PLV AHSS  APAPAPASDGTSIDQG+AYVLML+A
Sbjct: 3  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMA 62

Query: 62 LVLTYLIHPLDASSYNFFLN 81
          LVLTYLIHPLDASSY FFLN
Sbjct: 63 LVLTYLIHPLDASSYQFFLN 82

[Close]

BLAST of Cp4.1LG03g16390 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-15
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          MAS NS +      F  F+ +  ++  L  A S   APAPAP SDGTSIDQG+AY+LM+V
Sbjct: 1  MASRNSVTG-----FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVV 60

Query: 61 ALVLTYLIHPLDA-SSYNFF 80
          ALVLTYLIHPLDA SSY+FF
Sbjct: 61 ALVLTYLIHPLDASSSYSFF 73

[Close]

BLAST of Cp4.1LG03g16390 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-15
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60
          MAS NS +     +   F  +  ++SP   A S   APAP+P SDGTSIDQG+AY+LM+V
Sbjct: 1  MASRNSVA-----VIALFAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVV 60

Query: 61 ALVLTYLIHPLDA--SSYNFF 80
          ALVLTYLIHPLDA  SSY FF
Sbjct: 61 ALVLTYLIHPLDASSSSYTFF 74

[Close]

BLAST of Cp4.1LG03g16390 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-14
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 6  STSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLT 65
          S SR F G+ T  ++I  IL P+  AH+   APAPAP SDGT+IDQG+AYVLMLVALVLT
Sbjct: 2  SGSRLFFGVSTIVSIIFAILLPM--AHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLT 61

Query: 66 YLIH 70
          YLIH
Sbjct: 62 YLIH 63

[Close]

BLAST of Cp4.1LG03g16390 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-12
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 14 LFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH 70
          +   F +I  IL P+  +HSS  +PAPAP SDGTSIDQG+AYVLM+VAL LTY IH
Sbjct: 10 ILAVFVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g16390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82337	1.7e-14	60.00	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	2.2e-14	58.02	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
Q8L9T8	7.0e-13	65.63	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	1.1e-10	62.50	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of Cp4.1LG03g16390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528757.1	6.38e-48	100.00	arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo] >KAG7019041.1 Arabi...	[more]
XP_022924337.1	6.52e-46	97.59	arabinogalactan peptide 16-like [Cucurbita moschata] >KAG6582645.1 Arabinogalact...	[more]
XP_022979386.1	1.80e-43	93.98	arabinogalactan peptide 20-like [Cucurbita maxima]	[more]
XP_022147463.1	2.32e-41	88.89	arabinogalactan peptide 20-like [Momordica charantia]	[more]
XP_038905636.1	1.44e-39	88.89	arabinogalactan protein 41-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG03g16390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8M6	3.16e-46	97.59	arabinogalactan peptide 16-like OS=Cucurbita moschata OX=3662 GN=LOC111431859 PE...	[more]
A0A6J1IQM6	8.72e-44	93.98	arabinogalactan peptide 20-like OS=Cucurbita maxima OX=3661 GN=LOC111479127 PE=4...	[more]
A0A6J1D1D7	1.13e-41	88.89	arabinogalactan peptide 20-like OS=Momordica charantia OX=3673 GN=LOC111016381 P...	[more]
A0A0A0L7A0	1.93e-37	83.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120410 PE=4 SV=1	[more]
A0A6J1IAU1	5.11e-36	81.25	arabinogalactan peptide 16-like OS=Cucurbita maxima OX=3661 GN=LOC111473327 PE=4...	[more]

BLAST of Cp4.1LG03g16390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46330.1	1.2e-15	60.00	arabinogalactan protein 16	[more]
AT3G61640.1	1.5e-15	58.02	arabinogalactan protein 20	[more]
AT5G24105.1	4.9e-14	65.63	arabinogalactan protein 41	[more]
AT5G53250.1	7.9e-12	62.50	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 37..69 e-value: 2.5E-18 score: 65.7
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 7..76
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 7..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g16390.1	Cp4.1LG03g16390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane