Cp4.1LG03g15440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g15440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3
LocationCp4.1LG03: 7531511 .. 7533565 (+)
RNA-Seq ExpressionCp4.1LG03g15440
SyntenyCp4.1LG03g15440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTCTCTGCCGTCGCCCACAAGCTTTTCCTTCCCACTCCCACTCTCTCTCCCTCTTCTGTTCTCCCACGTTCCCTTCTCCGGCGAGACTCCTGTTTGTTCGACACCAAGACGTTCTTGAGTTGCCAAGTGTTTTGAGGTGAAACAGAAGAGCCGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTGATGCATCGCTATCACATCACCGGACGGGATGATTACAAGAAGTACTTTCCGCTTTCTTCTATCTTCTTCTATTTCTACCGTTTTCTTTGTGTTTACCGCTTTCATTTTTATTTTGTTTCATTTGATGTTTTAGGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAACTCCTCGAAAAGCTGTGAGTTTTTCCCTCCTTTTGGCTATAATTTTACACACAATTTCCTGCATTACATTAAGCAAGTTTGTCGTCTATTTGTGTAAATTAGTGATGAGAAGAAATTTATGGCATGTTGTAAGACTGCTCATTTGATCACTGCTAAAATTTCCCCTTCTAGCTTAGAGGTTCTAACAATTCAAGGGATAGGTATGAGATTGAGAGGAGTCATTACATTCGAATCCTCCAGCCACAATTGTGTTTGTATTAAAAAAATGAGCCACATTTGTGTCATCGATGCAAACTTCTCTGATGAAGCATGAACGAATTGCTGATCATGTTACTCTTTAGGGTTTATAGAATGAAGGGTTTGTTTCTTTTTTCTTCTATGAATGATTTAGACTTTAGTTGTCCATCTTACGCCTATACCTATCATATTGAAGATGCTATCAACGTTCCACTGGACTTATCAGTACCTTTTCCTCTCCTATATTGCTTAAGCCATTTTAATCCTGATATCTTTTTGCTCAATGTTTTCAGAACCACTTCATTTCTTCAATCTATCTAAGATTCTGGACTAAATGGCATAAGAAACTATCAATATTCATCATGATTAATGTATGTTATAATCTTCTAATGCTGAAATCATTTTAAACATATCAATATTCATCAAGAGGCCAAATCCTTTTTTATAGATGATCCTAATCTGAATGAATAATTGCATGCTAATCTGACTAAACTGAGATGAATTAATACAATCCTGATTATATATAACCATTTCTACTATTATTTGCAACTTTATCTGTAACATATTCCCACCTTTTCTCTCCTGAAAAAAAAAAATAATATAACAGGTACAATATGGGCGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGCCTGTCAGTGTCATCCTTTTGCAGGTAAAACGAACATCCTGCAGAAAACAATTCATTTCTTCTTTGGAGTTTTTCATGTTTTCTACTGCTAATAGCCCAATATTACCAATACATGAACCCTCATCCTTTTGCTGCATATTATTTTGACCTCAACCCTGTTTTCCCCTTTCTCGTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCCGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTACAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGAGAGATGAGTAGTTCTATCCAAGTTTTGGTTCCTTTTTTTGAGCACCTCATCTTGTATGAATCCTTTTCTCCCCCACCCTTTTAAGACCTAATTTTGTGTTATATAAGGCCAACGAATTTGGATAAATTTAGGTCGTATTGATATATTTGATATCTATTTCTATTTGTTATAGACTTCATTAATTAGAACAATAGTAATGATGTATTTATTAGGAAATTTCTATGTATTTTGTTCACTCCATGATGACTATATATATTTTAAAAAATATAA

mRNA sequence

CATCTCTCTGCCGTCGCCCACAAGCTTTTCCTTCCCACTCCCACTCTCTCTCCCTCTTCTGTTCTCCCACGTTCCCTTCTCCGGCGAGACTCCTGTTTGTTCGACACCAAGACGTTCTTGAGTTGCCAAGTGTTTTGAGGTGAAACAGAAGAGCCGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTGATGCATCGCTATCACATCACCGGACGGGATGATTACAAGAAGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAACTCCTCGAAAAGCTGTACAATATGGGCGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGCCTGTCAGTGTCATCCTTTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCCGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTACAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGAGAGATGAGTAGTTCTATCCAAGTTTTGGTTCCTTTTTTTGAGCACCTCATCTTGTATGAATCCTTTTCTCCCCCACCCTTTTAAGACCTAATTTTGTGTTATATAAGGCCAACGAATTTGGATAAATTTAGGTCGTATTGATATATTTGATATCTATTTCTATTTGTTATAGACTTCATTAATTAGAACAATAGTAATGATGTATTTATTAGGAAATTTCTATGTATTTTGTTCACTCCATGATGACTATATATATTTTAAAAAATATAA

Coding sequence (CDS)

ATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTGATGCATCGCTATCACATCACCGGACGGGATGATTACAAGAAGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAACTCCTCGAAAAGCTGTACAATATGGGCGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGCCTGTCAGTGTCATCCTTTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCCGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTACAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGA

Protein sequence

MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSMLKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDAMNC
Homology
[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy Swiss-Prot
Match: Q921Y2 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.2e-56
Identity = 103/180 (57.22%), Postives = 142/180 (78.89%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY MG++PTR SL LCD +S SSFCRRRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy Swiss-Prot
Match: Q3T0M3 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.4e-55
Identity = 102/180 (56.67%), Postives = 141/180 (78.33%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy Swiss-Prot
Match: Q9NV31 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.7e-55
Identity = 102/180 (56.67%), Postives = 141/180 (78.33%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KLY +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy Swiss-Prot
Match: P32899 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-54
Identity = 100/180 (55.56%), Postives = 142/180 (78.89%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           +RKLK HEQKLLKKV+FLEWK++ GHR+TQVM  YHI  R+DY KY+ IC  +++L + L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFA 120
             +   DPFR +  + LL+KLY MGV+ T+  + +L ++++VS+ CRRRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           E +++AV +IEQGH+RVGP  +NDPA+LVTRNMED++TWVD+SKIK+ +L+Y +++DDFD
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy Swiss-Prot
Match: O13835 (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-47
Identity = 89/183 (48.63%), Postives = 135/183 (73.77%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKR-EGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           MR LK HEQKLL+KV+FL +K  +  HR+  VM RYHI+ R++Y+KY+ IC   ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL++MG++P++  + ++ ++ +VS+ CRRRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDF 180
           ++ + EA   IEQGH+RVGP  + DPA+LVTR++EDF+TW D+SKIKR + +YNDKLDD+
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

Query: 181 DAM 182
           D +
Sbjct: 181 DLL 183

[Close]
BLAST of Cp4.1LG03g15440 vs. NCBI nr
Match: XP_022955364.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_023526276.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita pepo subsp. pepo] >KAG6581715.1 U3 small nucleolar ribonucleoprotein IMP3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018192.1 U3 small nucleolar ribonucleoprotein IMP3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368 bits (945), Expect = 1.60e-128
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 183
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. NCBI nr
Match: XP_022980729.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita maxima])

HSP 1 Score: 366 bits (940), Expect = 9.26e-128
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLV ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVCML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 183
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. NCBI nr
Match: KAA0041194.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >KAA0046137.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >TYK02423.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 358 bits (918), Expect = 2.10e-124
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. NCBI nr
Match: XP_004153543.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_015405 [Cucumis sativus])

HSP 1 Score: 357 bits (917), Expect = 2.98e-124
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. NCBI nr
Match: XP_038880355.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida])

HSP 1 Score: 356 bits (913), Expect = 1.21e-123
Identity = 174/183 (95.08%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVNML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMN+KDPFRLE+TEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNDKDPFRLEMTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy TrEMBL
Match: A0A6J1GW22 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 GN=LOC111457412 PE=3 SV=1)

HSP 1 Score: 368 bits (945), Expect = 7.75e-129
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 183
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy TrEMBL
Match: A0A6J1J025 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita maxima OX=3661 GN=LOC111480011 PE=3 SV=1)

HSP 1 Score: 366 bits (940), Expect = 4.48e-128
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLV ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVCML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 183
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy TrEMBL
Match: A0A5D3BRX0 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00220 PE=3 SV=1)

HSP 1 Score: 358 bits (918), Expect = 1.02e-124
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy TrEMBL
Match: A0A0A0KZG3 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=3 SV=1)

HSP 1 Score: 357 bits (917), Expect = 1.44e-124
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. ExPASy TrEMBL
Match: A0A5D3DJI4 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00290 PE=3 SV=1)

HSP 1 Score: 355 bits (912), Expect = 8.35e-124
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Cp4.1LG03g15440 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 292.7 bits (748), Expect = 2.0e-79
Identity = 138/181 (76.24%), Postives = 163/181 (90.06%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLK+HE+KL+KKVNFLEWKREG HRE ++ +RYH+  RDDYKKYS +CR VQKL +++
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+  DPFR+++T+ LLEKLYNMGVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAE
Sbjct: 61  KQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           H +EAVTYIEQGH+RVGPET+ DPAFLVTRNMEDFITWVDSSKIKRKVL+YND LDD+D 
Sbjct: 121 HHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDM 180

Query: 181 M 182
           +
Sbjct: 181 L 181

[Close]
BLAST of Cp4.1LG03g15440 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-07
Identity = 35/130 (26.92%), Postives = 67/130 (51.54%), Query Frame = 0 

Query: 20  WKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK+P R+   E LL 
Sbjct: 21  YEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLR 80

Query: 80  KLYNMGVI-PTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++  T+  L+    L+V +F  RRL T++ +   A+ +  A   I Q HIRVG 
Sbjct: 81  RMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGR 140

Query: 140 ETVNDPAFLV 149
           + VN P+F+V
Sbjct: 141 QLVNIPSFMV 150

[Close]
BLAST of Cp4.1LG03g15440 vs. TAIR 10
Match: AT5G15200.1 (Ribosomal protein S4 )

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 0 

Query: 20  WKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK P R+   E LL 
Sbjct: 21  YEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLR 80

Query: 80  KLYNMGVIPTRQS-LNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++   Q+ L+    L+V +F  RRL T++ +   A+ +  +   I Q HIRVG 
Sbjct: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGK 140

Query: 140 ETVNDPAFLVTRNMEDFITWVDSS 163
           + VN P+F+V  + +  I +  +S
Sbjct: 141 QLVNIPSFMVRLDSQKHIDFALTS 164

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g15440 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q921Y25.2e-5657.22U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im... [more]
Q3T0M34.4e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ... [more]
Q9NV315.7e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP... [more]
P328992.2e-5455.56U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
O138351.5e-4748.63U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
BLAST of Cp4.1LG03g15440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955364.11.60e-128100.00U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_02352... [more]
XP_022980729.19.26e-12899.45U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita maxima][more]
KAA0041194.12.10e-12496.17U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
XP_004153543.12.98e-12495.63U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 ... [more]
XP_038880355.11.21e-12395.08U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida][more]
BLAST of Cp4.1LG03g15440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GW227.75e-129100.00U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1J0254.48e-12899.45U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita maxima OX=3661 GN... [more]
A0A5D3BRX01.02e-12496.17U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A0A0KZG31.44e-12495.63S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126... [more]
A0A5D3DJI48.35e-12495.63U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
BLAST of Cp4.1LG03g15440 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15750.12.0e-7976.24Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [more]
AT5G39850.11.6e-0726.92Ribosomal protein S4 [more]
AT5G15200.12.0e-0725.00Ribosomal protein S4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 107..170
e-value: 2.9E-8
score: 43.4
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 107..153
e-value: 4.1E-11
score: 42.4
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 107..175
e-value: 4.4956E-8
score: 46.0886
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
e-value: 5.3E-26
score: 102.4
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..62
e-value: 8.5E-8
score: 33.0
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 107..181
e-value: 3.4E-8
score: 35.6
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..181
NoneNo IPR availablePROSITEPS50889S4coord: 107..173
score: 11.706702
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 26..174
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g15440.1Cp4.1LG03g15440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003723 RNA binding