Cp4.1LG03g14620 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g14620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Glutamate--tRNA ligase
Location	Cp4.1LG03: 8508806 .. 8509171 (-)
RNA-Seq Expression	Cp4.1LG03g14620
Synteny	Cp4.1LG03g14620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGTAACCATGGCGCTTACACGAACCAGATCTCATCTCAGAGACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCCACTGGTTCTTTTGGTGCTTATAATTGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACAGAAGGGAGAGAGATTCTGCAATTCTCCCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTCTGTTAAAGAATTCCTCTGGAGATGGAGAGCCTAA

mRNA sequence

ATGGATAGTAACCATGGCGCTTACACGAACCAGATCTCATCTCAGAGACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCCACTGGTTCTTTTGGTGCTTATAATTGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACAGAAGGGAGAGAGATTCTGCAATTCTCCCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTCTGTTAAAGAATTCCTCTGGAGATGGAGAGCCTAA

Coding sequence (CDS)

ATGGATAGTAACCATGGCGCTTACACGAACCAGATCTCATCTCAGAGACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCCACTGGTTCTTTTGGTGCTTATAATTGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACAGAAGGGAGAGAGATTCTGCAATTCTCCCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTCTGTTAAAGAATTCCTCTGGAGATGGAGAGCCTAA

Protein sequence

MDSNHGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTSSSCSSMSTDRRERDSAILPSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWRWRA

Homology

[Close]

BLAST of Cp4.1LG03g14620 vs. NCBI nr
Match: KAG6581812.1 (hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224 bits (572), Expect = 1.05e-73
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MDSNHGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSN+GAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS
Sbjct: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60

Query: 61  SSCSSMSTDRRERDSAILPSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           SSCSSMSTDRRERDSAIL SDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR
Sbjct: 61  SSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118

[Close]

BLAST of Cp4.1LG03g14620 vs. NCBI nr
Match: KAE8637311.1 (hypothetical protein CSA_023553, partial [Cucumis sativus])

HSP 1 Score: 180 bits (457), Expect = 3.49e-56
Identity = 98/119 (82.35%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MDSNHGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSN+ AY NQ SSQRPLAI LALASAVVLSPLR YE+ WSSGFV+PLVLL LI+AIKTS
Sbjct: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63

Query: 61  SSCSSMSTDRRERDSAILPSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           SSCSS S     RDSAILPSD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 64  SSCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 117

[Close]

BLAST of Cp4.1LG03g14620 vs. NCBI nr
Match: KAA0058525.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 3.04e-54
Identity = 97/119 (81.51%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MDSNHGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSN+ AY NQ SS RPLAIVLALASAV LSPLR YE+ WSSGFV+PLVLL LIIAIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 61  SSCSSMSTDRRERDSAILPSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           S CSS S     RDSAILPSD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SCCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of Cp4.1LG03g14620 vs. NCBI nr
Match: XP_030969466.1 (uncharacterized protein LOC115989757 [Quercus lobata])

HSP 1 Score: 140 bits (354), Expect = 2.04e-40
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 8   YTNQISSQRPLAIVLALASAVVLSPL--------RPYESRWSSGFVLPLVLLVLIIAIKT 67
           YT+Q SSQR +A+VLAL SA+VLSPL        R YE++WSSGFVLP+VL  LIIAIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSSCSSMSTDRRERDSAILPS-DPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           +SSCSSMS       ++I+PS DPSWVL+IGSSSWGLAG+L+ML+  LSWQ SV+EF WR
Sbjct: 66  TSSCSSMSAQGGR--ASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

[Close]

BLAST of Cp4.1LG03g14620 vs. NCBI nr
Match: KAF3958642.1 (hypothetical protein CMV_016470 [Castanea mollissima])

HSP 1 Score: 140 bits (354), Expect = 2.10e-40
Identity = 77/119 (64.71%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 8   YTNQISSQRPLAIVLALASAVVLSPL--------RPYESRWSSGFVLPLVLLVLIIAIKT 67
           YT+Q SSQR +A+VLAL SA+VLSPL        R  E++WSSGFVLP+VL  LIIAIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYSETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSSCSSMSTDRRERDSAILPSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           +SSCSSMS     R S I   DPSWVL+IGSSSWGLAG+L+ML+  LSWQ SV+EF WR
Sbjct: 66  TSSCSSMSAQGGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 124

[Close]

BLAST of Cp4.1LG03g14620 vs. ExPASy TrEMBL
Match: A0A0A0LEN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.54e-56
Identity = 98/119 (82.35%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MDSNHGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSN+ AY NQ SSQRPLAI LALASAVVLSPLR YE+ WSSGFV+PLVLL LI+AIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 61  SSCSSMSTDRRERDSAILPSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           SSCSS S     RDSAILPSD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SSCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of Cp4.1LG03g14620 vs. ExPASy TrEMBL
Match: A0A5A7UY99 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001090 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 1.47e-54
Identity = 97/119 (81.51%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MDSNHGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSN+ AY NQ SS RPLAIVLALASAV LSPLR YE+ WSSGFV+PLVLL LIIAIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 61  SSCSSMSTDRRERDSAILPSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           S CSS S     RDSAILPSD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SCCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of Cp4.1LG03g14620 vs. ExPASy TrEMBL
Match: A0A2N9IBH6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 7.18e-41
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 8   YTNQISSQRPLAIVLALASAVVLSPLRP--------YESRWSSGFVLPLVLLVLIIAIKT 67
           YT Q SSQR +A+VL+L SA+VLSPL          YE++WSSGFVLP+VL+ LIIAI+T
Sbjct: 6   YTGQYSSQRSVAMVLSLVSAIVLSPLYARRKNDTSYYETKWSSGFVLPMVLVGLIIAIRT 65

Query: 68  SSSCSSMSTDRRERDSAILPSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           +SSCSSMS     R S I   DPSWVL+IGSSSWGLAG+L+ML+  LSWQ+SV+EF WR
Sbjct: 66  TSSCSSMSAQGGARASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQASVQEFFWR 124

[Close]

BLAST of Cp4.1LG03g14620 vs. ExPASy TrEMBL
Match: A0A7N2LMQ6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 9.88e-41
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 8   YTNQISSQRPLAIVLALASAVVLSPL--------RPYESRWSSGFVLPLVLLVLIIAIKT 67
           YT+Q SSQR +A+VLAL SA+VLSPL        R YE++WSSGFVLP+VL  LIIAIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSSCSSMSTDRRERDSAILPS-DPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           +SSCSSMS       ++I+PS DPSWVL+IGSSSWGLAG+L+ML+  LSWQ SV+EF WR
Sbjct: 66  TSSCSSMSAQGGR--ASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

[Close]

BLAST of Cp4.1LG03g14620 vs. ExPASy TrEMBL
Match: A0A6J5WRZ7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS18716 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 7.46e-39
Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 7   AYTNQISSQRPLAIVLALASAVVLSPL---------RPYESRWSSGFVLPLVLLVLIIAI 66
           AYT+  SSQR  A+VLAL SA+VLSPL         R YE++WSSGFVLP+VL  LIIAI
Sbjct: 7   AYTSHSSSQRSTALVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KTSSSCSSMSTDRRERDSAILPSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLW 118
           KT+SS SS S+   + DS +   +PSWVL+IGSSSWGLAG+L++L+  LSWQ SV EFLW
Sbjct: 67  KTTSSSSSSSSSSSQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLW 126

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g14620 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g14620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581812.1	1.05e-73	98.31	hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8637311.1	3.49e-56	82.35	hypothetical protein CSA_023553, partial [Cucumis sativus]	[more]
KAA0058525.1	3.04e-54	81.51	putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative t...	[more]
XP_030969466.1	2.04e-40	65.00	uncharacterized protein LOC115989757 [Quercus lobata]	[more]
KAF3958642.1	2.10e-40	64.71	hypothetical protein CMV_016470 [Castanea mollissima]	[more]

BLAST of Cp4.1LG03g14620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEN3	1.54e-56	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1	[more]
A0A5A7UY99	1.47e-54	81.51	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A2N9IBH6	7.18e-41	63.03	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1	[more]
A0A7N2LMQ6	9.88e-41	65.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J5WRZ7	7.46e-39	61.16	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS18716 PE=...	[more]

BLAST of Cp4.1LG03g14620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758:SF1	SERINE RICH PROTEIN	coord: 1..118
None	No IPR available	PANTHER	PTHR35758	TRANSMEMBRANE PROTEIN	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g14620.1	Cp4.1LG03g14620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane