Cp4.1LG03g13990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g13990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	rop guanine nucleotide exchange factor 12
Location	Cp4.1LG03: 9124343 .. 9126878 (-)
RNA-Seq Expression	Cp4.1LG03g13990
Synteny	Cp4.1LG03g13990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTGTCAAGATTGCTGGTTTATTCTCTCTCGTTTATTCTATCAAAAGATTCATCAAAAAGCTGAAAATGGTACGAGAAATGGAGCAGGAGGAAGAGAATTGCAGGTCCAAATTCTTCAATTTCAAACATAAAACACTCCAAAAGCTTGAGCTTGGAGAGTTTAATAATAATAATGTTTTGTTTTCCAACAGAAACCAGGGATTAGATCCCCCAAACGACGGCGGGTTGGACAAATCCTCCGCTAATGGACCGGACAAAGGTCCTAAATCCAAGCCCTCCAGAGATGATGCTGCAGTTAAACAGCCTAAAAATCAGCCACCAACAGGTTCAGACATCTTTTTGTCTGTTTTATTTTCTGTTCTTTGAAATTATAAACTATAGTTTATGACTTCTCAAAATGAGTTGTAACATTATGATTATTTATATTATATGGTTGACATTCTGATGTTTGTGACATTTTCATTGCATAGATGTCTAATCTTATTGTCTTGTATGAACTAAAAGGCCATAATTTGTGTGTTCTTCTTGGAAATGATCAGAAATAGAACAGATGAAGGAGAGGTTCGCTAAGTTGCTTTTGGGTGAAGATATGTCCGGTGGAGGAAAGGGTGTTTCGTCGGCTTTAGCATTGTCGAATGCAATTACGAATCTTGCAGGTATGTCGTTCGTGTATCGATCTTCTGTTTTGTGTCGATAATATCGACGATATCAGTTGAATTATGCTCGGTTAGATGCTGTTAGAGGAAGCAAATCGAGATAAGTTTTGTAGTTGAATCTAGAGAGTCAAGTTTTTATCTTTATCCTATGGTTTATGCAGCTTCTGTTTTCGGGGAACAACGGCGTCTCGAGCCGATGTCGGAAGGGAGAAAAACACGGTGGAGAAAAGAGATTGACTTGCTATTATCAGTCACTGATTACATAGTTGAATTTGTTCCTTCCCAACAGAAATCCAAGGATGGAACAAACATGGAGGCAATTTTTTCTCTCCCTCTCTCTTTCTGAGCTTCAAAATGCATTTATAGATCATAATTCAGTTCATGTTCTTTGATTTAACAGATCATGGTTACCCGACAACGCAACGATCTTCACATGAACATCCCGGCATTGCGGAAGCTCGATGCGATGCTTATTGTAGGAAAAGACTGCTAATCTTGCTCTACTTTTTGTCCTGTTTAATAAGATTTAATGAATCTTTCTAATGGTTTCACATTATGTATAGGCTTGTTTGGATAATTTTAAGGACCAATCCGAGTTCTACTACTTATCCAGAGATTCAAGTAATAAAGACAATGCTTCAAAGAGAAATGATGACAAATGGTGGCTACCTACTCCAAAAGTTCCTGAGAATGGTTTATCTGAAAACTCAAGGAAATTTATGCAGTATCAAAAGGATTGTGTAAACCAAGTCCTTAAAGCAGCCATGGCTATCAATGCACAAGTTCTATCAGAAATGGAGATCCCAGAAAACTACATAGAGTTATTGCCTAAGGTAAATTTTGACTTCACGTCGGTTGGAGAGGATAACGGAACATTCCTTATATGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAATCTTGAGGGGACACCCGTATGGGAAAGTCCAAATAGGACAATATCTGCTAGCGGTGGGCTTGGGATTGGGCTGTTATAGATATCATAAATGCTCTATCTTTCATTGGTTTTGTGATTGAATATGTAAACTTGCAGAACGGGAGGGAAAGCCTTGGAGACTCCGTGTACAGAAACATAACGGTCGAGTACTTCGACCCGGATCAATTTCTGTCTACATTGGACTTATCTTCAGAGCACAAGATCTTAGATCTCAAGGATAGAATAGAAGCTTCCATTGTGATATGGAAGAGGAAAATGAACCAGAAAGATGGAAAATCTGCTTGGGGTTCAGCTGTAAGCTTGGAGAAACGAGAGCTTTTCGAGGAGCGAGCGGAAACGATTCTACTCATCCTCAAACATCGTTTCCCAGGCACTCCTCAATCAGCATTAGACATCAGCAAAATCCAATACAACCGGGTACAAAACAGGTTTTTTGGGAAGTACTTGTGTTTAAGACATTATATGACTTCTTAAATTTGGTCTAATAGGAGAGTGGTTTGGTTTTATAGGATGTTGGACAGGCTGTTCTAGAGAGTTACTCAAGAATTCTTGAAAGCTTAGCCTTCACAGTGATGTCAAGGATTGAGGACGTACTCGATGCAGATTACATCGCTCAAAATCCATCACAAGTATCGAGTAAGAAGAACTCGACACGGGAAACCGCAGTGAGCTCAGGAGAAGAGCCACAAAGTGCTGCAGACACACCTACTTCAATGACACTATTGGATTTCATGAATTGGGGTCCGGATATTGCTGATAATGAGGTAAAGAAGGAATCACCAACAGAGAATGCAGAAAATGTGTTCACAGAAACTGAACCAAGGCCTGTGCAAAAGCTTCAAAACGTAGCGACCAACAACAAGTTGGTTTCTTACCTCGAGAACATAGGCGGGACAAAAAGCCCCACGGCACGACAT

mRNA sequence

GTCTGTCAAGATTGCTGGTTTATTCTCTCTCGTTTATTCTATCAAAAGATTCATCAAAAAGCTGAAAATGGTACGAGAAATGGAGCAGGAGGAAGAGAATTGCAGAAACCAGGGATTAGATCCCCCAAACGACGGCGGGTTGGACAAATCCTCCGCTAATGGACCGGACAAAGGTCCTAAATCCAAGCCCTCCAGAGATGATGCTGCAGATGTTGGACAGGCTGTTCTAGAGAGTTACTCAAGAATTCTTGAAAGCTTAGCCTTCACAGTGATGTCAAGGATTGAGGACGTACTCGATGCAGATTACATCGCTCAAAATCCATCACAAGTATCGAGTAAGAAGAACTCGACACGGGAAACCGCAGTGAGCTCAGGAGAAGAGCCACAAAGTGCTGCAGACACACCTACTTCAATGACACTATTGGATTTCATGAATTGGGGTCCGGATATTGCTGATAATGAGGTAAAGAAGGAATCACCAACAGAGAATGCAGAAAATGTGTTCACAGAAACTGAACCAAGGCCTGTGCAAAAGCTTCAAAACGTAGCGACCAACAACAAGTTGGTTTCTTACCTCGAGAACATAGGCGGGACAAAAAGCCCCACGGCACGACAT

Coding sequence (CDS)

ATGGTACGAGAAATGGAGCAGGAGGAAGAGAATTGCAGAAACCAGGGATTAGATCCCCCAAACGACGGCGGGTTGGACAAATCCTCCGCTAATGGACCGGACAAAGGTCCTAAATCCAAGCCCTCCAGAGATGATGCTGCAGATGTTGGACAGGCTGTTCTAGAGAGTTACTCAAGAATTCTTGAAAGCTTAGCCTTCACAGTGATGTCAAGGATTGAGGACGTACTCGATGCAGATTACATCGCTCAAAATCCATCACAAGTATCGAGTAAGAAGAACTCGACACGGGAAACCGCAGTGAGCTCAGGAGAAGAGCCACAAAGTGCTGCAGACACACCTACTTCAATGACACTATTGGATTTCATGAATTGGGGTCCGGATATTGCTGATAATGAGGTAAAGAAGGAATCACCAACAGAGAATGCAGAAAATGTGTTCACAGAAACTGAACCAAGGCCTGTGCAAAAGCTTCAAAACGTAGCGACCAACAACAAGTTGGTTTCTTACCTCGAGAACATAGGCGGGACAAAAAGCCCCACGGCACGACAT

Protein sequence

MVREMEQEEENCRNQGLDPPNDGGLDKSSANGPDKGPKSKPSRDDAADVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNKLVSYLENIGGTKSPTARH

Homology

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy Swiss-Prot
Match: Q9M811 (Rop guanine nucleotide exchange factor 11 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF11 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 66/138 (47.83%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKN--STRETAVSSGEE 107
           DVG A+LESYSR+LESLA TVMSRIEDVL AD + Q P+  +  KN  S +E      EE
Sbjct: 415 DVGLAILESYSRVLESLAHTVMSRIEDVLYADQLTQEPTNNAPSKNRYSLKENE-KLREE 474

Query: 108 PQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNK 167
             S  +   S TL D M WG    +NE+KKES        F + E   + K+  + TNNK
Sbjct: 475 RLSFTEDMASGTLSDVMQWGN--KNNEMKKES-------FFGDREKPLLSKVTGIMTNNK 534

Query: 168 LVSYLENIGGTKSPTARH 184
             SYL+N+G  +SPTAR+
Sbjct: 535 KSSYLDNLGAMRSPTARY 542

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy Swiss-Prot
Match: Q9CA89 (Rop guanine nucleotide exchange factor 12 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF12 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-17
Identity = 66/139 (47.48%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQAVLESYSRILESLA+TV+SRI+DVL+AD           +  + R T + + EE  
Sbjct: 405 DVGQAVLESYSRILESLAYTVLSRIDDVLEAD-----------RAGNKRNTPLEAEEETL 464

Query: 108 SAADTPTSMTLLDFMNWGPDIADN---EVKKESPTENAENVFTETEPRPVQKLQNVATNN 167
                  SMTL DFM W  D A N   E KK+ P           +P   +KL  V T  
Sbjct: 465 VG-----SMTLSDFMGWDFDQAANAELESKKDLP----------DDPLIKEKLSVVTT-- 515

Query: 168 KLVSYLENIGGTKSPTARH 184
           K  SYLE +GG KSPTARH
Sbjct: 525 KKTSYLETLGGVKSPTARH 515

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy Swiss-Prot
Match: F4J1G1 (Rop guanine nucleotide exchange factor 13 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF13 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           D+G A++ESYSRILESLA TVMSRIEDVL+AD + QNP     K +  +ET     EE  
Sbjct: 444 DIGLAIVESYSRILESLAHTVMSRIEDVLEADQLTQNPELAMCKIHIVKETESPEKEEEP 503

Query: 108 S---AADTP----TSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
           +     D P     +++L + M W  +I  NE +KE   ++ + + T            +
Sbjct: 504 NFCLLEDRPKKQKPTISLSEVMQW--NIETNEPRKE---KSDKKLLTRVS-------SMI 563

Query: 168 ATNNKLVSYLENIGGTKSPTA 182
            +NNK  +YLE++G T+SPTA
Sbjct: 564 MSNNKKTTYLESLGTTRSPTA 572

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy Swiss-Prot
Match: Q1KS66 (Rop guanine nucleotide exchange factor 10 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF10 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13
Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQA+LESYSR+LESLA  +MSRIEDVL+AD + Q      ++  S  E A S  EE +
Sbjct: 360 DVGQAILESYSRVLESLASKIMSRIEDVLEADRLVQRQLMGEAETRSESE-AESEYEETE 419

Query: 108 S--AADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNK 167
              AA+TP S  L DF+ W      ++ KK S   + E      + +    +++     K
Sbjct: 420 KVVAAETPNSRKLSDFIGWR---LSSDTKKHSSMSDIEFFHKVEQEKEKPMMKSPRALPK 479

Query: 168 LVSYLENIGGTKSPTARH 184
             SYL  +   +SP+ RH
Sbjct: 480 KFSYLAKLENMRSPSDRH 493

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy Swiss-Prot
Match: Q9LV40 (Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF8 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-13
Identity = 58/143 (40.56%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDAD-------YIAQNPSQVSSKKNSTRETAV 107
           DVGQAVLESYSRILESLA+TVMSRIEDVL  D        +A+  S       +  E+A 
Sbjct: 399 DVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLALKQTLLAEETSDGGRTTETDSESAG 458

Query: 108 SSGEEPQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
           SS    ++    P S TLLDFM W     DN  K       + N+     P+ +  L+  
Sbjct: 459 SSNSGEEAEKHDPHSKTLLDFMGWN----DNSSKGGDKPTKSPNL----TPKKLSYLEK- 518

Query: 168 ATNNKLVSYLENIGGTKSPTARH 184
                    LEN+ G +SP  RH
Sbjct: 519 ---------LENLNGFRSPKDRH 523

[Close]

BLAST of Cp4.1LG03g13990 vs. NCBI nr
Match: XP_023529178.1 (rop guanine nucleotide exchange factor 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (667), Expect = 1.49e-81
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ
Sbjct: 400 DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 459

Query: 108 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNKLV 167
           SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNKLV
Sbjct: 460 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNKLV 519

Query: 168 SYLENIGGTKSPTARH 183
           SYLENIGGTKSPTARH
Sbjct: 520 SYLENIGGTKSPTARH 535

[Close]

BLAST of Cp4.1LG03g13990 vs. NCBI nr
Match: XP_022956262.1 (rop guanine nucleotide exchange factor 12 [Cucurbita moschata])

HSP 1 Score: 258 bits (659), Expect = 1.82e-80
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQAVLESYSRILESLAFTVMSRIEDVLDADY+AQNPSQVSSKKNSTRET VSSGEEPQ
Sbjct: 390 DVGQAVLESYSRILESLAFTVMSRIEDVLDADYMAQNPSQVSSKKNSTRETVVSSGEEPQ 449

Query: 108 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNKLV 167
           SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQN+ATNNKLV
Sbjct: 450 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNIATNNKLV 509

Query: 168 SYLENIGGTKSPTARH 183
           SYLENIGGTKSPTARH
Sbjct: 510 SYLENIGGTKSPTARH 525

[Close]

BLAST of Cp4.1LG03g13990 vs. NCBI nr
Match: KAG6581891.1 (Rop guanine nucleotide exchange factor 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256 bits (655), Expect = 2.65e-80
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQAVLESYSRILESLAFTVMSRIEDVLDADY+AQNPSQVSSKKNSTRETAVSSGEEPQ
Sbjct: 351 DVGQAVLESYSRILESLAFTVMSRIEDVLDADYMAQNPSQVSSKKNSTRETAVSSGEEPQ 410

Query: 108 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNKLV 167
           SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPR VQKLQN+ATNNKLV
Sbjct: 411 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRSVQKLQNIATNNKLV 470

Query: 168 SYLENIGGTKSPTARH 183
           SYLENIGGTKSPTARH
Sbjct: 471 SYLENIGGTKSPTARH 486

[Close]

BLAST of Cp4.1LG03g13990 vs. NCBI nr
Match: KAG7018325.1 (Rop guanine nucleotide exchange factor 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254 bits (649), Expect = 5.17e-79
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQAVLESYSRILESLAFTVMSRIEDVLDADY+AQNPSQVSSKKNSTRETAVSSGEEPQ
Sbjct: 386 DVGQAVLESYSRILESLAFTVMSRIEDVLDADYMAQNPSQVSSKKNSTRETAVSSGEEPQ 445

Query: 108 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNKLV 167
           SAADTPTSMTLLDFMNWGPDIADNEVKKESP ENAENVFTETEPR VQKLQN+ATNNKLV
Sbjct: 446 SAADTPTSMTLLDFMNWGPDIADNEVKKESPIENAENVFTETEPRSVQKLQNIATNNKLV 505

Query: 168 SYLENIGGTKSPTARH 183
           SYLENIGGTKSPTARH
Sbjct: 506 SYLENIGGTKSPTARH 521

[Close]

BLAST of Cp4.1LG03g13990 vs. NCBI nr
Match: XP_038902752.1 (rop guanine nucleotide exchange factor 12-like [Benincasa hispida])

HSP 1 Score: 212 bits (539), Expect = 2.69e-62
Identity = 114/143 (79.72%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSG---- 107
           DVGQAVLESYSRILESLAFTVMSRIEDVL ADYIAQNPSQ S KKN +RET VSSG    
Sbjct: 415 DVGQAVLESYSRILESLAFTVMSRIEDVLYADYIAQNPSQASGKKNPSRETPVSSGVDKC 474

Query: 108 ---EEPQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
              EE Q+AA+TPTSMTLLDFMNWGPDIADNEVKKESPT N++N+ TE+E + V KLQN+
Sbjct: 475 TTGEETQNAAETPTSMTLLDFMNWGPDIADNEVKKESPTANSDNLSTESEVKHVHKLQNI 534

Query: 168 ATNNKLVSYLENIGGTKSPTARH 183
            TNNKLVSYLENIGG KSPTARH
Sbjct: 535 VTNNKLVSYLENIGGLKSPTARH 557

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy TrEMBL
Match: A0A6J1GVU6 (rop guanine nucleotide exchange factor 12 OS=Cucurbita moschata OX=3662 GN=LOC111458014 PE=4 SV=1)

HSP 1 Score: 258 bits (659), Expect = 8.83e-81
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQAVLESYSRILESLAFTVMSRIEDVLDADY+AQNPSQVSSKKNSTRET VSSGEEPQ
Sbjct: 390 DVGQAVLESYSRILESLAFTVMSRIEDVLDADYMAQNPSQVSSKKNSTRETVVSSGEEPQ 449

Query: 108 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNKLV 167
           SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQN+ATNNKLV
Sbjct: 450 SAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNIATNNKLV 509

Query: 168 SYLENIGGTKSPTARH 183
           SYLENIGGTKSPTARH
Sbjct: 510 SYLENIGGTKSPTARH 525

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy TrEMBL
Match: A0A1S3BH13 (rop guanine nucleotide exchange factor 12-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489945 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 9.01e-61
Identity = 111/143 (77.62%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSG---- 107
           DVGQAVLESYSRILESLAFTVMSRIEDVL ADY+AQNPSQ S KKN +RE  VSSG    
Sbjct: 373 DVGQAVLESYSRILESLAFTVMSRIEDVLYADYVAQNPSQASGKKNPSRENPVSSGTDKF 432

Query: 108 ---EEPQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
              EE Q+AA+TPTSMTLLDFMNWGPDIADNEVKKESP  N++N+ TE E + V KLQN+
Sbjct: 433 PPGEETQNAAETPTSMTLLDFMNWGPDIADNEVKKESPPANSDNLSTEGEVKHVHKLQNI 492

Query: 168 ATNNKLVSYLENIGGTKSPTARH 183
            TNNKLVSYLENIGG KSPTARH
Sbjct: 493 VTNNKLVSYLENIGGLKSPTARH 515

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy TrEMBL
Match: A0A5D3CBI9 (Rop guanine nucleotide exchange factor 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G001010 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 1.48e-60
Identity = 111/143 (77.62%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSG---- 107
           DVGQAVLESYSRILESLAFTVMSRIEDVL ADY+AQNPSQ S KKN +RE  VSSG    
Sbjct: 397 DVGQAVLESYSRILESLAFTVMSRIEDVLYADYVAQNPSQASGKKNPSRENPVSSGTDKF 456

Query: 108 ---EEPQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
              EE Q+AA+TPTSMTLLDFMNWGPDIADNEVKKESP  N++N+ TE E + V KLQN+
Sbjct: 457 PPGEETQNAAETPTSMTLLDFMNWGPDIADNEVKKESPPANSDNLSTEGEVKHVHKLQNI 516

Query: 168 ATNNKLVSYLENIGGTKSPTARH 183
            TNNKLVSYLENIGG KSPTARH
Sbjct: 517 VTNNKLVSYLENIGGLKSPTARH 539

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy TrEMBL
Match: A0A5A7U6A7 (Rop guanine nucleotide exchange factor 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00390 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 1.61e-60
Identity = 111/143 (77.62%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSG---- 107
           DVGQAVLESYSRILESLAFTVMSRIEDVL ADY+AQNPSQ S KKN +RE  VSSG    
Sbjct: 401 DVGQAVLESYSRILESLAFTVMSRIEDVLYADYVAQNPSQASGKKNPSRENPVSSGTDKF 460

Query: 108 ---EEPQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
              EE Q+AA+TPTSMTLLDFMNWGPDIADNEVKKESP  N++N+ TE E + V KLQN+
Sbjct: 461 PPGEETQNAAETPTSMTLLDFMNWGPDIADNEVKKESPPANSDNLSTEGEVKHVHKLQNI 520

Query: 168 ATNNKLVSYLENIGGTKSPTARH 183
            TNNKLVSYLENIGG KSPTARH
Sbjct: 521 VTNNKLVSYLENIGGLKSPTARH 543

[Close]

BLAST of Cp4.1LG03g13990 vs. ExPASy TrEMBL
Match: A0A1S3BII1 (rop guanine nucleotide exchange factor 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489945 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 2.12e-60
Identity = 111/143 (77.62%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSG---- 107
           DVGQAVLESYSRILESLAFTVMSRIEDVL ADY+AQNPSQ S KKN +RE  VSSG    
Sbjct: 415 DVGQAVLESYSRILESLAFTVMSRIEDVLYADYVAQNPSQASGKKNPSRENPVSSGTDKF 474

Query: 108 ---EEPQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
              EE Q+AA+TPTSMTLLDFMNWGPDIADNEVKKESP  N++N+ TE E + V KLQN+
Sbjct: 475 PPGEETQNAAETPTSMTLLDFMNWGPDIADNEVKKESPPANSDNLSTEGEVKHVHKLQNI 534

Query: 168 ATNNKLVSYLENIGGTKSPTARH 183
            TNNKLVSYLENIGG KSPTARH
Sbjct: 535 VTNNKLVSYLENIGGLKSPTARH 557

[Close]

BLAST of Cp4.1LG03g13990 vs. TAIR 10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 66/138 (47.83%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKN--STRETAVSSGEE 107
           DVG A+LESYSR+LESLA TVMSRIEDVL AD + Q P+  +  KN  S +E      EE
Sbjct: 479 DVGLAILESYSRVLESLAHTVMSRIEDVLYADQLTQEPTNNAPSKNRYSLKENE-KLREE 538

Query: 108 PQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNK 167
             S  +   S TL D M WG    +NE+KKES        F + E   + K+  + TNNK
Sbjct: 539 RLSFTEDMASGTLSDVMQWGN--KNNEMKKES-------FFGDREKPLLSKVTGIMTNNK 598

Query: 168 LVSYLENIGGTKSPTARH 184
             SYL+N+G  +SPTAR+
Sbjct: 599 KSSYLDNLGAMRSPTARY 606

[Close]

BLAST of Cp4.1LG03g13990 vs. TAIR 10
Match: AT1G79860.1 (RHO guanyl-nucleotide exchange factor 12 )

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-18
Identity = 66/139 (47.48%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQAVLESYSRILESLA+TV+SRI+DVL+AD           +  + R T + + EE  
Sbjct: 405 DVGQAVLESYSRILESLAYTVLSRIDDVLEAD-----------RAGNKRNTPLEAEEETL 464

Query: 108 SAADTPTSMTLLDFMNWGPDIADN---EVKKESPTENAENVFTETEPRPVQKLQNVATNN 167
                  SMTL DFM W  D A N   E KK+ P           +P   +KL  V T  
Sbjct: 465 VG-----SMTLSDFMGWDFDQAANAELESKKDLP----------DDPLIKEKLSVVTT-- 515

Query: 168 KLVSYLENIGGTKSPTARH 184
           K  SYLE +GG KSPTARH
Sbjct: 525 KKTSYLETLGGVKSPTARH 515

[Close]

BLAST of Cp4.1LG03g13990 vs. TAIR 10
Match: AT3G16130.1 (RHO guanyl-nucleotide exchange factor 13 )

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-15
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           D+G A++ESYSRILESLA TVMSRIEDVL+AD + QNP     K +  +ET     EE  
Sbjct: 444 DIGLAIVESYSRILESLAHTVMSRIEDVLEADQLTQNPELAMCKIHIVKETESPEKEEEP 503

Query: 108 S---AADTP----TSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
           +     D P     +++L + M W  +I  NE +KE   ++ + + T            +
Sbjct: 504 NFCLLEDRPKKQKPTISLSEVMQW--NIETNEPRKE---KSDKKLLTRVS-------SMI 563

Query: 168 ATNNKLVSYLENIGGTKSPTA 182
            +NNK  +YLE++G T+SPTA
Sbjct: 564 MSNNKKTTYLESLGTTRSPTA 572

[Close]

BLAST of Cp4.1LG03g13990 vs. TAIR 10
Match: AT5G19560.1 (ROP uanine nucleotide exchange factor 10 )

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-14
Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDADYIAQNPSQVSSKKNSTRETAVSSGEEPQ 107
           DVGQA+LESYSR+LESLA  +MSRIEDVL+AD + Q      ++  S  E A S  EE +
Sbjct: 360 DVGQAILESYSRVLESLASKIMSRIEDVLEADRLVQRQLMGEAETRSESE-AESEYEETE 419

Query: 108 S--AADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNVATNNK 167
              AA+TP S  L DF+ W      ++ KK S   + E      + +    +++     K
Sbjct: 420 KVVAAETPNSRKLSDFIGWR---LSSDTKKHSSMSDIEFFHKVEQEKEKPMMKSPRALPK 479

Query: 168 LVSYLENIGGTKSPTARH 184
             SYL  +   +SP+ RH
Sbjct: 480 KFSYLAKLENMRSPSDRH 493

[Close]

BLAST of Cp4.1LG03g13990 vs. TAIR 10
Match: AT3G24620.1 (RHO guanyl-nucleotide exchange factor 8 )

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-14
Identity = 58/143 (40.56%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 48  DVGQAVLESYSRILESLAFTVMSRIEDVLDAD-------YIAQNPSQVSSKKNSTRETAV 107
           DVGQAVLESYSRILESLA+TVMSRIEDVL  D        +A+  S       +  E+A 
Sbjct: 399 DVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLALKQTLLAEETSDGGRTTETDSESAG 458

Query: 108 SSGEEPQSAADTPTSMTLLDFMNWGPDIADNEVKKESPTENAENVFTETEPRPVQKLQNV 167
           SS    ++    P S TLLDFM W     DN  K       + N+     P+ +  L+  
Sbjct: 459 SSNSGEEAEKHDPHSKTLLDFMGWN----DNSSKGGDKPTKSPNL----TPKKLSYLEK- 518

Query: 168 ATNNKLVSYLENIGGTKSPTARH 184
                    LEN+ G +SP  RH
Sbjct: 519 ---------LENLNGFRSPKDRH 523

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g13990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M811	1.7e-19	47.83	Rop guanine nucleotide exchange factor 11 OS=Arabidopsis thaliana OX=3702 GN=ROP...	[more]
Q9CA89	4.7e-17	47.48	Rop guanine nucleotide exchange factor 12 OS=Arabidopsis thaliana OX=3702 GN=ROP...	[more]
F4J1G1	2.2e-14	40.43	Rop guanine nucleotide exchange factor 13 OS=Arabidopsis thaliana OX=3702 GN=ROP...	[more]
Q1KS66	2.4e-13	39.13	Rop guanine nucleotide exchange factor 10 OS=Arabidopsis thaliana OX=3702 GN=ROP...	[more]
Q9LV40	7.1e-13	40.56	Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana OX=3702 GN=ROPG...	[more]

BLAST of Cp4.1LG03g13990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529178.1	1.49e-81	100.00	rop guanine nucleotide exchange factor 12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022956262.1	1.82e-80	97.79	rop guanine nucleotide exchange factor 12 [Cucurbita moschata]	[more]
KAG6581891.1	2.65e-80	97.79	Rop guanine nucleotide exchange factor 12, partial [Cucurbita argyrosperma subsp...	[more]
KAG7018325.1	5.17e-79	97.06	Rop guanine nucleotide exchange factor 12, partial [Cucurbita argyrosperma subsp...	[more]
XP_038902752.1	2.69e-62	79.72	rop guanine nucleotide exchange factor 12-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG03g13990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVU6	8.83e-81	97.79	rop guanine nucleotide exchange factor 12 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A1S3BH13	9.01e-61	77.62	rop guanine nucleotide exchange factor 12-like isoform X2 OS=Cucumis melo OX=365...	[more]
A0A5D3CBI9	1.48e-60	77.62	Rop guanine nucleotide exchange factor 12-like isoform X1 OS=Cucumis melo var. m...	[more]
A0A5A7U6A7	1.61e-60	77.62	Rop guanine nucleotide exchange factor 12-like isoform X1 OS=Cucumis melo var. m...	[more]
A0A1S3BII1	2.12e-60	77.62	rop guanine nucleotide exchange factor 12-like isoform X1 OS=Cucumis melo OX=365...	[more]

BLAST of Cp4.1LG03g13990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.1	1.2e-20	47.83	RHO guanyl-nucleotide exchange factor 11	[more]
AT1G79860.1	3.4e-18	47.48	RHO guanyl-nucleotide exchange factor 12	[more]
AT3G16130.1	1.6e-15	40.43	RHO guanyl-nucleotide exchange factor 13	[more]
AT5G19560.1	1.7e-14	39.13	ROP uanine nucleotide exchange factor 10	[more]
AT3G24620.1	5.0e-14	40.56	RHO guanyl-nucleotide exchange factor 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.58.2010	PRONE domain, subdomain 1	coord: 43..89 e-value: 3.4E-13 score: 51.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..152
None	No IPR available	PANTHER	PTHR33101:SF10	ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 12	coord: 47..183
IPR005512	PRONE domain	PFAM	PF03759	PRONE	coord: 47..83 e-value: 3.6E-13 score: 49.1
IPR005512	PRONE domain	PROSITE	PS51334	PRONE	coord: 1..89 score: 14.091373
IPR038937	Rop guanine nucleotide exchange factor	PANTHER	PTHR33101	ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1	coord: 47..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g13990.1	Cp4.1LG03g13990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
molecular_function	GO:0005085	guanyl-nucleotide exchange factor activity