Cp4.1LG03g13040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g13040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	54S ribosomal protein L51, mitochondrial-like
Location	Cp4.1LG03: 9884324 .. 9888284 (-)
RNA-Seq Expression	Cp4.1LG03g13040
Synteny	Cp4.1LG03g13040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCACTTTACTGATTTTGGGTCTAATTCGGTACGATCATTTCGGACATCTAAAGTGGAATGCGAGAATTAAGAAACCAAGTTATGGAAATGAGATGAGTCAAAATTGTTTTGCACACACATTTGAAGAGTTAGTGAAGCATTCAAAGTTGAAGGTTCAAAGTTGATGCATTAAATCAAAACCGGTGTGTGTATCCCATTTCCCAGAAATACCCTAAAAATTCAACCTTTTTATTCTTTGGTCAAAATCAGTCTCTCCAAAACCCCCCCTTCCATTCACTATAAAAACCCCTCCAAATCTTAACCCATTTCCAAATCACACAAGCCAATCCCAAACAGCTCTCCATCTTTGCCTTTCTGAGCATCATGACGTTCCAAAATATTCGTTCCTTTTTCATCGTTTGTGTTGTGTTCGGTATCATTTTGAGTCAGATTAGTATGACAGATGCAGCACGAGTGCTCTCTGAGACTTCAAATCATCGTGTTGATTACGTCGACCCATATTCAATAGTTTATCAGAAAGTCTCAGGTTGGCTTGGTAAGTTATCTTCCGGACCAAGTCCTAGTGGCCCGGGACACTAACACTTGATCGGTGAAAGAAGATAGAGAATTCATTTTCTTTCCTAAGTTTTTTATTTATTATTATTTCATTTCTTCCTTTTTATTTTTAGTTCTTGGCCAACTTTTGGGCGTTCATATTCTTATGTTGTTCATTACACAAACGTGTAAACAAATAATGTATTACACTTTGATTTATAAATTAATATATTTCATTATAAATTAAAATGTGGACATGGGCATGGCTGCTATCTTTCTATAGCAGTCCTCAATTTAGTTGTCTCCTTCAACATATTTCTTCTCGTCTCGATACTCGGACGCCTTCCTGATCACCACATATGTTAAAGATCTCCTGATAATAGTTTGGTCGTTAATGGATGTAATATTACTCTGGACATTTCATAAACATTTCAAATAAAAACTCATTAGAATCTTGAACGAAATTAAGAATTTGAACTGAAGTGACGGTTTCTTTAAATAATATGATCGTGAAGTTCCTGTGATCCCAGTGAAAAATTAAGAGTAATTTTGTCATTAAAATTAATTTTTAAAATACAAATATATTTTCTGTAATTTAGCAAAAAAAAAAAAAAAAAAAAAAANATTTCGTTATTATTATTTTTTTAATACTTAGCTTTCTTCTTCTAAACCCTCTTTCTTTCACGTTCAGCCACCCCCTCCACTCCATTACCAGCCGCCGCCGCCGCCGCACTCTCAGCTGTCACAGTCTCAGCCTTCCGACGAAATCAGAGTTACTAATCTCTATTCCCCAGAAACCCAGTGGTTCGCCATTGGTGCGATCGCGCCGCCGCCGCTCGTTTTCCAAATTCCCAAGGTTTTATTGTTATTTGTTTCGTTGGATTATGTTGGTTTATTCTGTTCACCTACGGAGAAGGAAAATCAAGAACGAATCATTTATTGTTCGTATTTGAAAAGATTGAAATTATTGCTTTCAATGTTAGAAAAGAAAAAAAAAATTGAATTAATGGTGTTGAGTCTTCTTGAATATAGAAGAAACTATCAATGCGTATGAACTATCTTGGCATAGTATAGATGGCTTTGCGAGGTGTATGGCAGCTTAAGAAGCTGATTGTCAGCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATCAGGTTTGTTGGATTTCTTATTTCATTACTGAGAATTCACTTTTAACTGATGGAGACCTAAGTTTTAATCTGGAAGTAGTTTGAATCTTCATTTTCCAGCATGATTATTTCAAATGCATATCTATATTAACTAGCAACCTTGTCTACTAACGCATGAATCATCACTATATAGGTTCTGGTAGAGTGCATTTGTCGCACCTTCAATTTGTAGATGATGACACTCTTTTTTTTTTTTTTTTCTGCTTAGAGAAGGAGAATTCCAATAGGAAACTCGATGGTTTTATGTTCTTTGAAGCTATTTCAGGCCCAAAATTAACCATTGAGTGAACTGCAAGCCTTCTTGTAACGGTTCAAGCCTACCGATAACAGATATTGTCCTCTTTGGGCTTTCCCTTTCCGTCTTTCCCTCAAGATTTTTAAAACACGTCTGTTAGGGGAAGGTTTCCACACCCTTAGAAAGAATGGTTCATTCTCCTCCCCAACTGATGTGGGATCTCACACTTCTAAAATGACTTGGTCTCTTTGGTGGGGTGTGAAGTGAGTCAGGTTCTTGGATCTTACCTCGGTCTTTCTTTGGGAGATAACCCAAGATCTGTGTGTTTTTGGAACAATGTGGTGGAGAAAGTTCAAAAAACAGTTGTTGTCGAGGAAGATTAACCTTGATTCAATGTGTTGAGTGTAATTCGTATTTACTGCTTCTCTCTTTTTAGGACGCCCGTGTCGATTAGTCAGGAACGTTGAGAAGTTAATGAGGAATCTCTTGTGGGTAGGGATTAGGAGGAGGGGGGAGTTCATTTGGTCATTGAGAGGTGGTCTGCAATTATGTAATGAAACCTTTTTGTCCAAATGATTGTGGAATTTCCACTTGGAGTATGGTACTCTGTGGCAAAGGATTATTGTGAACAAGTATTGCTTCAGGCTTTCTTTTGTTCCCTTTCTTTTTGTCCAAAGGATTACTGTTAAGTTTTGGATGGAAGAGTGAAACTCAGGACTACCTCCAAAGGCTTTCTTGGTATTGCAGTTTCATTGGTGTGTTCTTTGTAGGAGTGAGGAAGAGGATTTTGACCATTTGTTTCAGGATTGTCATTTGGTTAGTTCGCGGTGGAACCGATTTCTTACGATGTTTGGGATTGTATTGCCTTGAAATAGAGAGCGTTTTTCGTGTTTGAGGAGGTGCTTTTGAACCTTCCCGTTCATTACATAGGAAGGATCCTATGATAGTTTAGTTTTTTGCTATTTTGTGTGGCATCTAGCTCGAGAGGAATAGTAGAATTTGTCGTCGGGTGGAGTGGTCTGATTTAATTCCTCTATGAGCGTCTGTTAATACAACATTTTGTATTATCAGTTTAGCTTTTTTTTTTTTTTTTATAAAAGAAAGTTCTTCATCCTTTCTGTGTGAAATAAAACCAAACTTTTTCCAATTATCATCCTGTGTTTTCCTGGTTGATACCCTTCTTTAGCCCAGTCATAATCACTGTGGTGTTGGAGCCATGCTCGTCGACTCATCAGTGCTTCATATCCTCAACTACTATCATATAGATCAATAAAATATCGTAACATTTCGCTGCTAACTTTACTTTTCTTCGAAATTTCATGATATATAGTTATGTTGGTTGTTGTTATTATTACCGATATGTAGCTTTTACAGCGAAACATATTTTCCTGAAAGATTTGGATCTTATCATTGAATTTGCAGGGCATTTATGGACTCAGAATTGCCAGCTTTTAGAGAGAAAAATCCTCAGCTACAAATAGTTACTGACCTCATTCGTGGGCAGCATCCACACTTAAAGGGCTTCTACAGTAATTCTCCATCTCTCTCCACTTTTGGTAGTTATAACTTTCAAAGTATTTTAACATTGGGTTTTCCCATATTCCTTAACTTTCACAGAAAGCAATAATCATCGGGTGATATGTGTGAACAACATGGATCCGGAAGACATACATTTACATGCAACGAGACTAAGGAATGCACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATGTAACCAAGAATCCTAGTGCGCAAGGTACTTGGAACACTGATTTAAGATTTTGAGCCCTGCATACATAATTCCTAACGAGCTTGATTGTCGTTTGGAGGTTGTTTTTTCCATCCATTGTTAGATGTTTAAGCCAAGCTCTATCTTGCTTGAATTTGTAGTTTCTAGTGAGTCCCATGTAACTTTTTCAAGGTTGTTAATGTCCCATGAGCTTCTCTTGAAGAATTGCATGAAACAGAACAGGATTCTGATTTGATTTGTTA

mRNA sequence

ATGATGCACTTTACTGATTTTGGGTCTAATTCGCCACCCCCTCCACTCCATTACCAGCCGCCGCCGCCGCCGCACTCTCAGCTGTCACAGTCTCAGCCTTCCGACGAAATCAGAGTTACTAATCTCTATTCCCCAGAAACCCAGTGGTTCGCCATTGGTGCGATCGCGCCGCCGCCGCTCGTTTTCCAAATTCCCAAGCTTAAGAAGCTGATTGTCAGCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATCAGGGCATTTATGGACTCAGAATTGCCAGCTTTTAGAGAGAAAAATCCTCAGCTACAAATAGTTACTGACCTCATTCGTGGGCAGCATCCACACTTAAAGGGCTTCTACAAAAGCAATAATCATCGGGTGATATGTGTGAACAACATGGATCCGGAAGACATACATTTACATGCAACGAGACTAAGGAATGCACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATGTAACCAAGAATCCTAGTGCGCAAGGTACTTGGAACACTGATTTAAGATTTTGAGCCCTGCATACATAATTCCTAACGAGCTTGATTGTCGTTTGGAGGTTGTTTTTTCCATCCATTGTTAGATGTTTAAGCCAAGCTCTATCTTGCTTGAATTTGTAGTTTCTAGTGAGTCCCATGTAACTTTTTCAAGGTTGTTAATGTCCCATGAGCTTCTCTTGAAGAATTGCATGAAACAGAACAGGATTCTGATTTGATTTGTTA

Coding sequence (CDS)

ATGATGCACTTTACTGATTTTGGGTCTAATTCGCCACCCCCTCCACTCCATTACCAGCCGCCGCCGCCGCCGCACTCTCAGCTGTCACAGTCTCAGCCTTCCGACGAAATCAGAGTTACTAATCTCTATTCCCCAGAAACCCAGTGGTTCGCCATTGGTGCGATCGCGCCGCCGCCGCTCGTTTTCCAAATTCCCAAGCTTAAGAAGCTGATTGTCAGCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATCAGGGCATTTATGGACTCAGAATTGCCAGCTTTTAGAGAGAAAAATCCTCAGCTACAAATAGTTACTGACCTCATTCGTGGGCAGCATCCACACTTAAAGGGCTTCTACAAAAGCAATAATCATCGGGTGATATGTGTGAACAACATGGATCCGGAAGACATACATTTACATGCAACGAGACTAAGGAATGCACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATGTAACCAAGAATCCTAGTGCGCAAGGTACTTGGAACACTGATTTAAGATTTTGA

Protein sequence

MMHFTDFGSNSPPPPLHYQPPPPPHSQLSQSQPSDEIRVTNLYSPETQWFAIGAIAPPPLVFQIPKLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNHRVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF

Homology

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy Swiss-Prot
Match: Q9UUC8 (54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl51 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-12
Identity = 29/105 (27.62%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 68  KKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNHRV 127
           +++  SYC+WGGSS+G++ F+ ++L +  +++  ++      +G+HP ++ +Y +   +V
Sbjct: 24  RRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKV 83

Query: 128 ICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWN 173
           IC   M    I   A   R++ G K   ++    + NPS +G W+
Sbjct: 84  ICTRKMSASSIFQKAILCRDSDGLKPRLIKYPVESTNPSVRGIWS 128

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy Swiss-Prot
Match: Q758S3 (54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRPL51 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 68  KKLIVSYCDWGGSSRGIRAFMDSE-LPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNHR 127
           KK+ + YC+WGGSS+G+R F+ S+ L  + EK PQ+Q    + +  HP LK  Y +  ++
Sbjct: 24  KKITLQYCNWGGSSQGLRDFLTSKRLAKWAEKYPQIQFEV-VAKAGHPVLKAEYINGLNK 83

Query: 128 VICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTK-------NPSAQGTWN 173
            ICV N++ + + L    LR + G ++     RH  K       N S +G W+
Sbjct: 84  AICVRNLNVDHVELKLKLLRESSGAQL-----RHYPKNANVLSLNQSVRGVWS 130

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy Swiss-Prot
Match: Q06090 (54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL51 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-08
Identity = 32/109 (29.36%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 68  KKLIVSYCDWGGSSRGIRAFMDSE-LPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNHR 127
           +K+ + +C+WGGSS G+R F+ S+ L  + ++ P +Q    + +  HP L+  Y +   +
Sbjct: 24  RKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQFEV-MRKSGHPLLRAEYTNGREK 83

Query: 128 VICVNNMDPEDIHLHATRLRNALGRKVLKLRTRH---VTKNPSAQGTWN 173
           VICV N++ +++      L+++ G  +L+ RT++    + N S +G W+
Sbjct: 84  VICVRNLNIDNVENKLKLLKDSDG-DILRRRTKNDNVESLNSSVRGIWS 130

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy Swiss-Prot
Match: Q5A3J1 (54S ribosomal protein L51, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MRPL51 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.1e-05
Identity = 27/105 (25.71%), Postives = 49/105 (46.67%), Query Frame = 0


Query: 69  KLIVSYCDWGGSSRGIRAFM-DSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNHRV 128
           ++ V YC+WGGSS  +R  + +  L  + +  P +      +RG HP L   Y +N  + 
Sbjct: 25  RITVQYCNWGGSSTHLRELLTNGGLNNYAKSKPDIFFEIKQLRG-HPKLIFHYNNNVTKE 84

Query: 129 ICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWN 173
           + + N+   +I    T      G ++ K   +  + N S +G W+
Sbjct: 85  VEIKNIKQNEIIKTLTEYSQRSGNELFKFNHKVKSINDSVRGIWS 128

[Close]

BLAST of Cp4.1LG03g13040 vs. NCBI nr
Match: XP_023528298.1 (54S ribosomal protein L51, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234 bits (598), Expect = 1.11e-76
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +LKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH
Sbjct: 8   QLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF
Sbjct: 68  RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 119

[Close]

BLAST of Cp4.1LG03g13040 vs. NCBI nr
Match: XP_022979453.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 229 bits (585), Expect = 1.06e-74
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +LKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVT+LIRGQHPHLKGFYKSNNH
Sbjct: 8   QLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKGFYKSNNH 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RVICV NMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTD+RF
Sbjct: 68  RVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]

BLAST of Cp4.1LG03g13040 vs. NCBI nr
Match: XP_023528299.1 (54S ribosomal protein L51, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213 bits (542), Expect = 3.10e-68
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +LKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH
Sbjct: 8   QLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQ 168
           RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQ
Sbjct: 68  RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQ 110

[Close]

BLAST of Cp4.1LG03g13040 vs. NCBI nr
Match: XP_038877046.1 (54S ribosomal protein L51, mitochondrial [Benincasa hispida])

HSP 1 Score: 211 bits (538), Expect = 1.53e-67
Identity = 96/112 (85.71%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +LKKL+VSYCDWGGSSRGIRAFMDS+LPAF+EKNPQL++VT+LIRGQHPHLKGFYKSNN+
Sbjct: 8   QLKKLVVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKGFYKSNNN 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RV+CV NMDPE+IHL A RLRNALGRKV+KLRTRHVTKNPS QGTWNTD+RF
Sbjct: 68  RVVCVKNMDPEEIHLCAMRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cp4.1LG03g13040 vs. NCBI nr
Match: XP_022158383.1 (54S ribosomal protein L51, mitochondrial [Momordica charantia])

HSP 1 Score: 207 bits (528), Expect = 5.10e-66
Identity = 93/112 (83.04%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +L+KLIVSYCDWGGSSRGIRAFMDS+LPAF+EKNPQL++VT+LIRGQHPHLK FYK+NN 
Sbjct: 8   QLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKAFYKNNNE 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RV+CV N+DPE+I+LHA RLRNALGRKV+KLRTRHVTKNPS QGTWNTD+RF
Sbjct: 68  RVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy TrEMBL
Match: A0A6J1IW90 (54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479166 PE=3 SV=1)

HSP 1 Score: 229 bits (585), Expect = 5.14e-75
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +LKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVT+LIRGQHPHLKGFYKSNNH
Sbjct: 8   QLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKGFYKSNNH 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RVICV NMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTD+RF
Sbjct: 68  RVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy TrEMBL
Match: A0A6J1DVX7 (54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111024881 PE=3 SV=1)

HSP 1 Score: 207 bits (528), Expect = 2.47e-66
Identity = 93/112 (83.04%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +L+KLIVSYCDWGGSSRGIRAFMDS+LPAF+EKNPQL++VT+LIRGQHPHLK FYK+NN 
Sbjct: 8   QLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKAFYKNNNE 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RV+CV N+DPE+I+LHA RLRNALGRKV+KLRTRHVTKNPS QGTWNTD+RF
Sbjct: 68  RVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy TrEMBL
Match: A0A1S3BXU0 (54S ribosomal protein L51, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494585 PE=3 SV=1)

HSP 1 Score: 203 bits (516), Expect = 1.66e-64
Identity = 91/112 (81.25%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +LKKL+VSYCDWGGSSRGIRAFM+S++PAF+EKNPQL++VT+L RGQHP+LKGFYKSNN+
Sbjct: 8   QLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELNRGQHPYLKGFYKSNNN 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RV+CV NMDPE+IH  ATRLRN+LGRKV+KLRTRHVTKNPS QGTWNTD+RF
Sbjct: 68  RVVCVKNMDPEEIHSCATRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy TrEMBL
Match: A0A0A0KU37 (L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011700 PE=3 SV=1)

HSP 1 Score: 203 bits (516), Expect = 1.66e-64
Identity = 90/112 (80.36%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +LKKL+VSYCDWGGSSRGIRAFM+S++PAF+EKNPQL++VT+LIRGQHPHLKGF++SNN+
Sbjct: 8   QLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKGFFRSNNN 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RV+CV NMDPE+IH  A RLRN+LGRKV+KLRTRHVTKNPS QGTWNTD+RF
Sbjct: 68  RVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cp4.1LG03g13040 vs. ExPASy TrEMBL
Match: A0A0S3R580 (L51_S25_CI-B8 domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G354200 PE=3 SV=1)

HSP 1 Score: 201 bits (510), Expect = 1.36e-63
Identity = 91/112 (81.25%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +L KL+VSYC+WGGSSRGIRAFM+S LPAF+EKNPQL++VT+LIRGQHPHLKGFYK+ N 
Sbjct: 8   QLNKLVVSYCNWGGSSRGIRAFMESHLPAFKEKNPQLEVVTELIRGQHPHLKGFYKNKNQ 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 177
           RVICV NMDPEDIHLHATRLRNALGRKV+KLRTRHVTK+PS QGTW T L +
Sbjct: 68  RVICVKNMDPEDIHLHATRLRNALGRKVVKLRTRHVTKHPSVQGTWTTALEY 119

[Close]

BLAST of Cp4.1LG03g13040 vs. TAIR 10
Match: AT3G59650.1 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein )

HSP 1 Score: 188.3 bits (477), Expect = 5.1e-48
Identity = 81/112 (72.32%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYKSNNH 125
           +LKKL+VSYC+WGGSSRGIRAFM+SELPA +EKNPQL+++T+L RGQHP+LKG Y++ N 
Sbjct: 8   QLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKGIYRNRNE 67

Query: 126 RVICVNNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDLRF 178
           RV+CV NMDPE++ L+ATRLRN+LGRKV+KLRTRHVTK+PS QGTW T ++F
Sbjct: 68  RVVCVKNMDPEEVLLNATRLRNSLGRKVVKLRTRHVTKHPSVQGTWTTAVKF 119

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BLAST of Cp4.1LG03g13040 vs. TAIR 10
Match: AT3G59650.2 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein )

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-43
Identity = 81/139 (58.27%), Postives = 101/139 (72.66%), Query Frame = 0


Query: 66  KLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTDLIRGQHPHLKGFYK---- 125
           +LKKL+VSYC+WGGSSRGIRAFM+SELPA +EKNPQL+++T+L RGQHP+LKG Y     
Sbjct: 8   QLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKGIYSMYIS 67

Query: 126 -----------------------SNNHRVICVNNMDPEDIHLHATRLRNALGRKVLKLRT 178
                                  + N RV+CV NMDPE++ L+ATRLRN+LGRKV+KLRT
Sbjct: 68  PLLNTILIQRLLILAISLAQFIGNRNERVVCVKNMDPEEVLLNATRLRNSLGRKVVKLRT 127

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g13040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UUC8	7.5e-12	27.62	54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q758S3	1.7e-11	34.51	54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /...	[more]
Q06090	1.0e-08	29.36	54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q5A3J1	3.1e-05	25.71	54S ribosomal protein L51, mitochondrial OS=Candida albicans (strain SC5314 / AT...	[more]

BLAST of Cp4.1LG03g13040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528298.1	1.11e-76	99.11	54S ribosomal protein L51, mitochondrial-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_022979453.1	1.06e-74	96.43	54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima]	[more]
XP_023528299.1	3.10e-68	99.03	54S ribosomal protein L51, mitochondrial-like isoform X2 [Cucurbita pepo subsp. ...	[more]
XP_038877046.1	1.53e-67	85.71	54S ribosomal protein L51, mitochondrial [Benincasa hispida]	[more]
XP_022158383.1	5.10e-66	83.04	54S ribosomal protein L51, mitochondrial [Momordica charantia]	[more]

BLAST of Cp4.1LG03g13040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IW90	5.14e-75	96.43	54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1DVX7	2.47e-66	83.04	54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3BXU0	1.66e-64	81.25	54S ribosomal protein L51, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494585...	[more]
A0A0A0KU37	1.66e-64	80.36	L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0117...	[more]
A0A0S3R580	1.36e-63	81.25	L51_S25_CI-B8 domain-containing protein OS=Vigna angularis var. angularis OX=157...	[more]

BLAST of Cp4.1LG03g13040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59650.1	5.1e-48	72.32	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	[more]
AT3G59650.2	2.2e-43	58.27	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007741	Ribosomal protein/NADH dehydrogenase domain	SMART	SM00916	L51_S25_CI_B8_2	coord: 76..149 e-value: 7.7E-15 score: 65.3
IPR007741	Ribosomal protein/NADH dehydrogenase domain	PFAM	PF05047	L51_S25_CI-B8	coord: 84..134 e-value: 3.2E-8 score: 33.4
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 61..176 e-value: 7.9E-37 score: 128.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..28
IPR039927	39S ribosomal protein L43/54S ribosomal protein L51	PANTHER	PTHR21396	39S RIBOSOMAL PROTEIN L43	coord: 65..174
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 67..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g13040.1	Cp4.1LG03g13040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome