Cp4.1LG03g12690 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g12690
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	30S ribosomal protein S1 homolog B
Location	Cp4.1LG03: 9991539 .. 9997967 (-)
RNA-Seq Expression	Cp4.1LG03g12690
Synteny	Cp4.1LG03g12690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTATAAATTAGGAACCAAACATAAGAAAGAAATGAAATGGGCGAGACGTGTATGCTTTTGAGTCACCCAAATAACGGATTCCTTCCCATCGGATTTGCGGCAGTTCGTGGCTTTCCATTTCGAGCTCAATCCGAATGCTTTGCCACCGCGCTCCTCCCCGCCATTTCCTTCCCACTCACCTCCCAACATGCCAATCTTTGCTGCTACAACGCTCGGATCTCTCTCCGCTCATTCATTTCTTGCACTCTCCGCCTCCACTGATGCTTCCAACTCCCTTTCAACCTCCTTCTTTTTAACCCATAAATCCCCCTCTAAACGCCCTTCCAATTTCGCCGCCAGAGTTTCCCTTTCCGGAAAACCGGACCCCATTGCCGGAGTTCTGGAAAGTTCGCCGTCATCGCCGGAGTCAGTTCGACGTGCTCGGGTGAGTACATTGTTCATCCCTTCTTTCTTTTAATCGAACGACTGGGGTTTTCTTTTATATCCGATTTTCTCTTTAAATGAATCACTCTGGAAGTAACAAGTTTGCTGTATTCGAATTCGAATTCTGGTTCCAAGCGCTGAAGGTTTTGAATAATTCATTAGAAGTGTATGTGTGAAGCTTTTGGCACTCAATTCCGTCAAGATTTTGAGATTAGGTTTTGATTTTCACCGCCAGATATTCTGTTTCCACTCAATTATTTCACTTAGGGCATTGAATTGCAGCCTTCTAGTTTTGTTGTTCAACCATGCAATATCAAGGGCTAAAGATGATGCCATGGGTTCAAAAGGATCATCATTTAGCCATCATGATTGGATGGTTGTTGTTGGGAGCAAAAAGTTTATGCTTAGCCTGAATTTGTATGAGTATTGTTAAACTCTTATATTCTAATACTTGGTTTCTGCAAAGAAGTAGAGATCTGCTGATTGGAAGACAGCGAGGGAATACCTTGATAGTGGATTTATCTTCAAAGGTAGGATTGAAGGTTCGAATGCTGGAGGTTTACTCGTCCGATTTTATTCTCTTGTGGGGTTTCTTCCATTCCCTCTATTGAGCCCTGCTCATTCTTGTAAAGGTACAAGTTCTCTTAATCCTTTGTGCTATATGCTATTAGACGAAGTCAGTAGTTTACCCAATAATGACTTGAATTGCTTGAGGTATATTTGTTTCAAGTTTTTTTTAACATTAATTTCTTGCAGAACCATACAAGAGTATCCAAGATATTGCAAAAAGCTTAATTGGTTCACTTATACCAGTGAAGGTAGTTAACTACTAAAGTTGTCCTTAATTTTAATCGTTTATAGTTTTGAAAGCATCTCCTCTAGTTGGCTGAAGACTGGTGTATTTCTATTTGCTTCGCCACTCCCTAGTGTCCAACATGAGCACAAACTAGGTCATGTATCAAACGTGTGTCCAACACACCAAAATAAAACTCATTTTTTATATTTGTTTCTTTTAAGTTTTCTTTTGAAACTCAGACATTTAGTACTTTCAGTTAGCCATATGTTCAAAGAATCTGAGACGGATATGAGGGGTATATCTTTGTTCAAGGGGAGGAGACTAAGGGCGCGATAGTCCTGACACCATGTACCCCACAATGTAATTTAGGCTCGTGCTTTGTCTAGGTTGTTGCCTTGGGGATGTCAAGAACAAACTCTCGTAGTCAATTGAGACGATTGAGAGTGGATGGATGAGTGTAGGTGTAAGTGGTACTTTGTTCAAGGTGCAAACAATGTCTCACATCGACTAGGCAAGCGAGAGATCCATGCTTTATAAGTGAGAACAATTATTTCTATTGGTATGAGGCTTTTTAGGTGAATCAAAAGCAAAACTACGAGGTCTTAAACCAAAAGTCGATAATATCGTACCATTGTGGAAATATGTGGAGGGTCGATTGTCCATAACAGAATTTTCATTTTTGTACGGAGTGGGGCACCAAAGACTTCCTTGTATTGAATCTTTCTTTCTATTTTCTTTCTCCGTGTTCTTCAGCTTTAGCTGGGACAGATGCTTCTTTGGCTCCTGTAACTACTAGAGAAAATGATCACTCTCCCCTCCGTTTGAAATTTCTTTCTCACTGTCTCCACTTTGCTCCCTCTTATATTCTTCCTTTCCTCTGTCAAATATTTTCCTGAAGTTCCTCAAATCATTTCCCAAACTATGCACCAACATCTCTTTTGAAATTGAACTATGGGATGGTACCCTTGCTTCCTCTGTTCTAAATCTAATGAATTAAAACTCAACTGATCCAATTTAGGTCCAAATTTTTTATTTGAATCATAATTGGTCAATGAAGAAAGTAAAACACTTGGATCATGTGGCTACACCATATTACACATATTCATAAAGTGAAACAGAGAAAGTTGTAATGTAATTGTTTATGAGGGAAATGAAGGAAAAAAATTAGGGGTCTATTCCATTTGGGCGAGATAGTTCTTTCATCATTCATATTCACAGTTGACCATCCCTGCTTTTGAAATACTTAGGTGAGGATACATTAAACCCTGTCTTTTCTTATTTTCTAGGTTATCCAAGCAGATGAGAAAAACAAGAATTTGATATTTTCAGAGAAGGAAGCTGCATGGTCAAAGTTTTCTGAGCAAGTTGGTGTGGGAGATGTCTATGAAGCTAGAGTTGGCTCTGTGGAGGATTATGGTGCCTTTGTACATTTACGTTTCTCTGATGGTGATATTTTGTGTTCTATTAAGCTTATGTACTGATATATTAAGAAATCAATTACCACTTATTTTCCAAAATTCGACAGGTCTCTATCATCTTACTGGGCTAGTACATATATCAGAAGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATCTTAAGCGAGGGTGACGAAGTGAGGGTGAAAGTCATTGATGTTGATAGGCAAGTCTTGTCAGATTTCCTTCTGTCACCAGCTAATGTGCACCTTCTAGGAAATTCTGTTATTTGAAGTATTTTTATCCACTATAAAACATATACAAGGCTTTCTCTTGGTTACAAATAATTGTTATATAGTGTTATAATGAAGTGCAAATTATGAGCTCGATCATATTCAGCGCAAGTTTGTTAGCTAGCTAGCTACAGCTGTTATTGTTTGTAATTAGTGCTGTAACTAGAGACGGGTATAGATATTGTACCAAACTTACTTGTGAGATCGCACATCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGCGTGGAAACCTCTCCTTAAGCAGACACGTATTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAAGCCCAAAGAGTACAATATCTGCTAGCAGTGGGCTTAGGCTGTTACAAATGATATTAGAGTCAGACACCGGAGGGTGTGCCAGCGAGGACGTTGAGCCTAGAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTATGTATAAGGGTGTGGAAACTTCTCCCTAGTAGACGCATATTAAAAACCTTGAGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCAAGTGGTGGGCTTGAATTGTTACATTATCGATGAAACATGAAATATAGACTCGTTCTTTGGTGGATGTAGACCAATTATTGGGTCGAACCACTTAAAAATCTTGTGAGTTCCTCTGCTGTTTCTTTCCCTCTTAATCTTTGTAATTGTTCTGATTCTGGTTAAAACCCAGATTAGCCATAGGCGATAGATGATTTTGTTATTTTCGCAGAAGGTTAAGAAATGGAAAACGAGGAAAATGTGATAAGACTAGCTAAATTTATATCATCTCATGCTTTTAGGCCATTGCCTATTGCCATGCATTGTCAGCTGTCTTATTGGTTTTATGCAGGGACAAGTCGAGGATCACATTATCGATTAAACAACTCGAGGAAGATCCACTTTTGGAAACATTGGACAAAGTAATACCGCAGGTTAGTGAAGCATTGATGTACGCATTTAGTCAGTCTTTTCAACTACTTTCATCTCATAACTGAGCTTTAACTACATGAACATCATAATTTATTATAACAGGATGATTCTGCTGAACCTGATTCGTTCGGACCTAAAAGTGACAGCGAAATCATACCCCTTCCTGGACTTGATACAATATTTGAAGAGCTACTGCAAGAAGAAGGGTATGTTTCTCTAATCTTCAAAGCTATGGAGAGCACTGTCTAAAAAGATTACTTATAACAACAATGTATGGACATCAACAGTACCAATAAATATGCATTGGCTTGTTCTGATTTTTTGAGTTTAACTTTTGTGTTAGACAGACAATGTGATGTACATACAAATATTTATATACATTCATACACATACGTATAGGGTTCAAATATGAGATGAATTGGCTGACACTGAACAAACTAAAGAGGGCTTGTCTGGGACTTCGTGCATTTTTTTCACTTCATTGATAAACTTTGTTAGATTTTTAGTCATTGGTAGGGATCATATTATCAGCATGTGAGTTCTCAAGTTATATTAACCTTGAGTTAGCAGTATGATCTTAATATGATTAGTTTGAATATCAGTATAGAAGATGTTCATATCAACCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATGTAAGATGGTTTGTTACTAAGAATATTATGTGGGGTTTAGTCATTTGCTTCAATTTCTCAATTGTCATCTTACTGTTACTGTAGGCACCTCCTGTTGAAAAGAAGTTCACTCTCCTTGCTCGTGCCGGGAGGCAGGTAGTTGTTTCTCCTTCTCACACATGCACAAGCATGAGCACATGCACACAGATACCAACTGTAACGGCCCAAACCCCCCGCTAGCAGATATTGTTCTCTTTGAGCTTCCCATTTCGGGTTTCTCCTTAAGGTTTTTAAAACGCGTCTGTTAGGGGGAGGTTTCCACGCCCTTATAAAGAAAGCTGTATTTCCCTCTTAAACCGATGTGGGATCTCACAATTTACTCCCCTTAAGACCCAGCGTCCTTGCTGGCACACCGCTCAGTGTCTGGTTCTGATACCATTTGTAACAGTCAAAACCTACTGCTAGCAGATATTGTCTTCTTTGGGCTTTCTCTTTCGGGCTTCTTCTAAACAACTTTAAAACGCGTCTATTAAGGGGAGATTTCCACACCCTTATAATGAATACTTTGTTCTCCTCCCCAATCAATATAGGATCTCACACTAACATCAATGGTTCTTGAATTTAGGTTCAAGAAATACAACTGACAACATCACTCGATCAGGAAGGTATTAAAAGGGCATTGCAGCGAGTGTTGGAACGTGTCCCATGATTTGTGAACAGAGTTGAACAATTCGATTTTGAATGAAGCTGTCTGTAAAGAAGATGATATCAATTCAATTGTTTCAAGTAAGTTGTATATCTTGTCTGGTCTCTACGTCTATTCTAATGGTAAAAGGTTCTTGTAAGCATGAATGCTCGATCATTGTCTGACAGCCTTCATCTTGGAGGATTTGTAGTCTTTGCTTCTCATAGCCAATATATATATATATATTGTATACGTATATTTCCTTTTTTCTTATTTCATAATCATTTCTGCGGAGAGATATAAGGCTCGTCTAACTTGATTTGACCCATGACCTTATAGATCAAGTTTTCTCCATCTCAGTTTAGCGTTAAATGAACATCTCTAAACTTAATCATGTGATATTAGTTATCATGAAACTTTTGTTATTCTAGTACAATTCGATGCCATGTTCTCTTCTCGTTAGCGCTGAATAGTGTTTGATCACTTCACCAATAAGATAAATATAATATCTTCCTCAATGACGACTTAGAAAAAGTTCATATGGGTATACCTACCGATATGGAATCCACAAAAGAATTACCAGTAAAATGCACGAACTCTAAAAAATATTCTTCGGGGCTTGGAACGACATATTGTAAATTCAGCACCTAGTACATATTGTCTTATTTGAGTTTTCTCAAACTTTTTAAAATGCGTATGTTAATGAGATGTTTCCACACACTTATACCGATGTGAGATCTCACAATCCACCCTCGTTCGGGTCCTAGCGTCTTTGTTGGCACACTGTCTTATGTCCACCCATTTCAGGGCTCCAGTCTCCTTGTGGGCACATCACCCAGTGTTTGACTATGATACCATTTATACGACCAAAACCCACTACTAACAGATATTATCCTGTTTGAGCTTTTCCTTTCGAGTTTTTCATCAAGGGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCTTGTTATAAAAAATGTTTCGTTCTCCTCCCCAACTGATGTGAGATCTCAAAGATAGTGTTGATCATGAAACTTTCAAAGTATAGAAATTAAACCCTAAACCTTAGTACATTCGAAAATTGTAGTGACTCCTTGTTAGCAAGGGCCCTGTACGTTTGAGGCACATGACATATTTAGAGTCAACTCCTATATGTATGCTTTACAGAGTAAAAGGTTT

mRNA sequence

TATCTATAAATTAGGAACCAAACATAAGAAAGAAATGAAATGGGCGAGACGTTTCGTGGCTTTCCATTTCGAGCTCAATCCGAATGCTTTGCCACCGCGCTCCTCCCCGCCATTTCCTTCCCACTCACCTCCCAACATGCCAATCTTTGCTGCTACAACGCTCGGATCTCTCTCCGCTCATTCATTTCTTGCACTCTCCGCCTCCACTGATGCTTCCAACTCCCTTTCAACCTCCTTCTTTTTAACCCATAAATCCCCCTCTAAACGCCCTTCCAATTTCGCCGCCAGAGTTTCCCTTTCCGGAAAACCGGACCCCATTGCCGGAGTTCTGGAAAGTTCGCCGTCATCGCCGGAGTCAGTTCGACGTGCTCGGAGATCTGCTGATTGGAAGACAGCGAGGGAATACCTTGATAGTGGATTTATCTTCAAAGGTAGGATTGAAGGTTCGAATGCTGGAGGTTTACTCGTCCGATTTTATTCTCTTGTGGGGTTTCTTCCATTCCCTCTATTGAGCCCTGCTCATTCTTGTAAAGAACCATACAAGAGTATCCAAGATATTGCAAAAAGCTTAATTGGTTCACTTATACCAGTGAAGGTTATCCAAGCAGATGAGAAAAACAAGAATTTGATATTTTCAGAGAAGGAAGCTGCATGGTCAAAGTTTTCTGAGCAAGTTGGTGTGGGAGATGTCTATGAAGCTAGAGTTGGCTCTGTGGAGGATTATGGTGCCTTTGTACATTTACGTTTCTCTGATGGTCTCTATCATCTTACTGGGCTAGTACATATATCAGAAGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATCTTAAGCGAGGGTGACGAAGTGAGGTCGAGGATCACATTATCGATTAAACAACTCGAGGAAGATCCACTTTTGGAAACATTGGACAAAGTAATACCGCAGGATGATTCTGCTGAACCTGATTCGTTCGGACCTAAAAGTGACAGCGAAATCATACCCCTTCCTGGACTTGATACAATATTTGAAGAGCTACTGCAAGAAGAAGGTATAGAAGATGTTCATATCAACCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATAGTAAAAGGTTT

Coding sequence (CDS)

ATGAAATGGGCGAGACGTTTCGTGGCTTTCCATTTCGAGCTCAATCCGAATGCTTTGCCACCGCGCTCCTCCCCGCCATTTCCTTCCCACTCACCTCCCAACATGCCAATCTTTGCTGCTACAACGCTCGGATCTCTCTCCGCTCATTCATTTCTTGCACTCTCCGCCTCCACTGATGCTTCCAACTCCCTTTCAACCTCCTTCTTTTTAACCCATAAATCCCCCTCTAAACGCCCTTCCAATTTCGCCGCCAGAGTTTCCCTTTCCGGAAAACCGGACCCCATTGCCGGAGTTCTGGAAAGTTCGCCGTCATCGCCGGAGTCAGTTCGACGTGCTCGGAGATCTGCTGATTGGAAGACAGCGAGGGAATACCTTGATAGTGGATTTATCTTCAAAGGTAGGATTGAAGGTTCGAATGCTGGAGGTTTACTCGTCCGATTTTATTCTCTTGTGGGGTTTCTTCCATTCCCTCTATTGAGCCCTGCTCATTCTTGTAAAGAACCATACAAGAGTATCCAAGATATTGCAAAAAGCTTAATTGGTTCACTTATACCAGTGAAGGTTATCCAAGCAGATGAGAAAAACAAGAATTTGATATTTTCAGAGAAGGAAGCTGCATGGTCAAAGTTTTCTGAGCAAGTTGGTGTGGGAGATGTCTATGAAGCTAGAGTTGGCTCTGTGGAGGATTATGGTGCCTTTGTACATTTACGTTTCTCTGATGGTCTCTATCATCTTACTGGGCTAGTACATATATCAGAAGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATCTTAAGCGAGGGTGACGAAGTGAGGTCGAGGATCACATTATCGATTAAACAACTCGAGGAAGATCCACTTTTGGAAACATTGGACAAAGTAATACCGCAGGATGATTCTGCTGAACCTGATTCGTTCGGACCTAAAAGTGACAGCGAAATCATACCCCTTCCTGGACTTGATACAATATTTGAAGAGCTACTGCAAGAAGAAGGTATAGAAGATGTTCATATCAACCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATAGTAAAAGGTTT

Protein sequence

MKWARRFVAFHFELNPNALPPRSSPPFPSHSPPNMPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGKPDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVRSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNSKRF

Homology

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BLAST of Cp4.1LG03g12690 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.8e-18
Identity = 61/203 (30.05%), Postives = 101/203 (49.75%), Query Frame = 0


Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           I G  E+  S   S+R+ +    W+  R+      + KG+I G+N GG++     L GF+
Sbjct: 151 IIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFV 210

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PF  +S   S +E           L+   IP+K ++ DE+   L+ S ++ A +    Q+
Sbjct: 211 PFSQISSKSSAEE-----------LLEKEIPLKFVEVDEEQSRLVMSNRK-AMADSQAQL 270

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV-- 274
           G+G V    V S++ YGAF+ +        + GL+H+S++S D V D+  +L  GD +  
Sbjct: 271 GIGSVVTGTVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKV 330

Query: 275 --------RSRITLSIKQLEEDP 288
                   R R++LS K+LE  P
Sbjct: 331 MILSHDRERGRVSLSTKKLEPTP 335

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BLAST of Cp4.1LG03g12690 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-17
Identity = 61/203 (30.05%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           I G  ES  S   S+R  +    W+  R+      I K ++ G+N GGL+     L GF+
Sbjct: 154 IIGENESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFV 213

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PF  +S   + +E           L+   IP+K ++ DE+   L+ S ++A  +    Q+
Sbjct: 214 PFSQISSKAAAEE-----------LLEKEIPLKFVEVDEEQTKLVLSNRKAV-ADSQAQL 273

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV-- 274
           G+G V    V S++ YGAF+ +        + GL+H+S++S D V D+  +L  GD +  
Sbjct: 274 GIGSVVLGVVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKV 333

Query: 275 --------RSRITLSIKQLEEDP 288
                   R R++LS K+LE  P
Sbjct: 334 MILSHDRDRGRVSLSTKKLEPTP 338

[Close]

BLAST of Cp4.1LG03g12690 vs. ExPASy Swiss-Prot
Match: P74142 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1b PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-12
Identity = 52/215 (24.19%), Postives = 104/215 (48.37%), Query Frame = 0


Query: 98  VLESSPSSPESVRRARR----SADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGF 157
           ++ S  +    VR +RR       W+   E  +SG   +  + G+N GG++     L GF
Sbjct: 82  LVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGF 141

Query: 158 LPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQ 217
           +P             +   +D   +L+G ++   +++A++ N  L+ +++    ++   +
Sbjct: 142 IP-----------RSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGK 201

Query: 218 VGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEG---- 277
           +  G++YE +V  ++ YG FV +        +TGL+H+S+VS   V  +  + + G    
Sbjct: 202 IAAGNIYEGKVAKIQPYGVFVEIE------GVTGLLHVSQVSGTRVDSLNTLFAFGQAIS 261

Query: 278 ------DEVRSRITLSIKQLEEDP--LLETLDKVI 297
                 DE ++RI+LS + LE  P  L+E  D+++
Sbjct: 262 VYVQEIDEYKNRISLSTRILETYPGELVEKFDEMM 279

[Close]

BLAST of Cp4.1LG03g12690 vs. ExPASy Swiss-Prot
Match: P51345 (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps1 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.1e-12
Identity = 51/189 (26.98%), Postives = 88/189 (46.56%), Query Frame = 0


Query: 108 SVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKE 167
           S+RR      WK  R+ L    +   RI+G N GG++V    + GF+             
Sbjct: 94  SIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFV------------- 153

Query: 168 PYKSIQDIAK--SLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVG 227
           P   + + +K  S     I +K++  +EK+ NLI S + A  ++ S  + VG++ E  + 
Sbjct: 154 PNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVIN 213

Query: 228 SVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVRS----------R 285
            +  YG F+         +L GLVHISE++   V+ +      GD +++          R
Sbjct: 214 QITPYGLFIKAG------NLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGR 263

[Close]

BLAST of Cp4.1LG03g12690 vs. ExPASy Swiss-Prot
Match: Q1XDE2 (30S ribosomal protein S1, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps1 PE=3 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-11
Identity = 48/186 (25.81%), Postives = 85/186 (45.70%), Query Frame = 0


Query: 108 SVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKE 167
           S+RR      WK  R+ L    +    I+G N GG+++    + GF+P   L        
Sbjct: 94  SIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQK--- 153

Query: 168 PYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSV 227
                   ++      I +K++  +EK+ NLI S + A  S+ S  + VG++ E  +  +
Sbjct: 154 --------SEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQI 213

Query: 228 EDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVRS----------RIT 284
             YG F+ +       +L GLVHISE++   ++ +      GD +++          R++
Sbjct: 214 TPYGLFIKVG------NLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLS 262

[Close]

BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: XP_023526022.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111789621 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 628 bits (1619), Expect = 2.96e-224
Identity = 328/339 (96.76%), Postives = 329/339 (97.05%), Query Frame = 0


Query: 32  PPNMPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGK 91
           PPNMPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGK
Sbjct: 44  PPNMPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGK 103

Query: 92  PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 151
           PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV
Sbjct: 104 PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 163

Query: 152 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 211
           GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS
Sbjct: 164 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 223

Query: 212 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 271
           EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE
Sbjct: 224 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 283

Query: 272 VR----------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 331
           VR          SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL
Sbjct: 284 VRVKVIDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 343

Query: 332 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSN+
Sbjct: 344 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNA 382

[Close]

BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: XP_022955545.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111457527 [Cucurbita moschata])

HSP 1 Score: 618 bits (1594), Expect = 1.90e-220
Identity = 322/339 (94.99%), Postives = 327/339 (96.46%), Query Frame = 0


Query: 32  PPNMPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGK 91
           PPNMPIFAATTLGSLSAHSFL+LSAS DASNSLSTSF LTHKSPSKRPSNFAARVSLSGK
Sbjct: 44  PPNMPIFAATTLGSLSAHSFLSLSASADASNSLSTSFLLTHKSPSKRPSNFAARVSLSGK 103

Query: 92  PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 151
           P+PIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV
Sbjct: 104 PEPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 163

Query: 152 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 211
           GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS
Sbjct: 164 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 223

Query: 212 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 271
           E+VGVGDVYEARVGS+EDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE
Sbjct: 224 EKVGVGDVYEARVGSLEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 283

Query: 272 VR----------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 331
           VR          SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL
Sbjct: 284 VRVKVIDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 343

Query: 332 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSN+
Sbjct: 344 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNA 382

[Close]

BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: KAG7018465.1 (30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 612 bits (1579), Expect = 6.75e-219
Identity = 320/336 (95.24%), Postives = 324/336 (96.43%), Query Frame = 0


Query: 35  MPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGKPDP 94
           MPIFAATTLGSLSAHSFL+LSAS DASNSLSTSF LTHKSPSKRPSNFAARVSLSGKP+P
Sbjct: 1   MPIFAATTLGSLSAHSFLSLSASADASNSLSTSFLLTHKSPSKRPSNFAARVSLSGKPEP 60

Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL
Sbjct: 61  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 120

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSE+V
Sbjct: 121 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEKV 180

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR- 274
           GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR 
Sbjct: 181 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVRV 240

Query: 275 ---------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI 334
                    SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI
Sbjct: 241 KVIDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI 300

Query: 335 FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNA 336

[Close]

BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: XP_022979820.1 (uncharacterized protein LOC111479406 [Cucurbita maxima])

HSP 1 Score: 608 bits (1568), Expect = 3.19e-217
Identity = 318/336 (94.64%), Postives = 323/336 (96.13%), Query Frame = 0


Query: 35  MPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGKPDP 94
           MPIFAATTLGSLSAHSFL+L ASTDAS+SLS+SF LTHKSPSKRPSNFAARVSLSGKP+P
Sbjct: 1   MPIFAATTLGSLSAHSFLSLLASTDASHSLSSSFVLTHKSPSKRPSNFAARVSLSGKPEP 60

Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL
Sbjct: 61  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 120

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV
Sbjct: 121 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 180

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR- 274
           GVGDVYEARVGSVEDYGAFVHLRFSDG YHLTGLVHISEVSWDLVQDVRDILSEGDEVR 
Sbjct: 181 GVGDVYEARVGSVEDYGAFVHLRFSDGFYHLTGLVHISEVSWDLVQDVRDILSEGDEVRV 240

Query: 275 ---------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI 334
                    SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI
Sbjct: 241 KVLDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI 300

Query: 335 FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNA 336

[Close]

BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: KAG6582039.1 (30S ribosomal protein S1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 606 bits (1562), Expect = 2.62e-216
Identity = 317/336 (94.35%), Postives = 323/336 (96.13%), Query Frame = 0


Query: 35  MPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGKPDP 94
           MPIFAATTLGSLSAHSFL+L ASTDAS+SLS+SF  THKSPSKRPSNFAARVSLSGKP+P
Sbjct: 1   MPIFAATTLGSLSAHSFLSLLASTDASHSLSSSFVSTHKSPSKRPSNFAARVSLSGKPEP 60

Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL
Sbjct: 61  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 120

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSE+V
Sbjct: 121 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEKV 180

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR- 274
           GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR 
Sbjct: 181 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVRV 240

Query: 275 ---------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI 334
                    SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI
Sbjct: 241 KVIDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI 300

Query: 335 FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNA 336

[Close]

BLAST of Cp4.1LG03g12690 vs. ExPASy TrEMBL
Match: A0A6J1GVD7 (LOW QUALITY PROTEIN: uncharacterized protein LOC111457527 OS=Cucurbita moschata OX=3662 GN=LOC111457527 PE=4 SV=1)

HSP 1 Score: 618 bits (1594), Expect = 9.18e-221
Identity = 322/339 (94.99%), Postives = 327/339 (96.46%), Query Frame = 0


Query: 32  PPNMPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGK 91
           PPNMPIFAATTLGSLSAHSFL+LSAS DASNSLSTSF LTHKSPSKRPSNFAARVSLSGK
Sbjct: 44  PPNMPIFAATTLGSLSAHSFLSLSASADASNSLSTSFLLTHKSPSKRPSNFAARVSLSGK 103

Query: 92  PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 151
           P+PIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV
Sbjct: 104 PEPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 163

Query: 152 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 211
           GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS
Sbjct: 164 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 223

Query: 212 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 271
           E+VGVGDVYEARVGS+EDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE
Sbjct: 224 EKVGVGDVYEARVGSLEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 283

Query: 272 VR----------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 331
           VR          SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL
Sbjct: 284 VRVKVIDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 343

Query: 332 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSN+
Sbjct: 344 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNA 382

[Close]

BLAST of Cp4.1LG03g12690 vs. ExPASy TrEMBL
Match: A0A6J1IUF3 (uncharacterized protein LOC111479406 OS=Cucurbita maxima OX=3661 GN=LOC111479406 PE=4 SV=1)

HSP 1 Score: 608 bits (1568), Expect = 1.55e-217
Identity = 318/336 (94.64%), Postives = 323/336 (96.13%), Query Frame = 0


Query: 35  MPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGKPDP 94
           MPIFAATTLGSLSAHSFL+L ASTDAS+SLS+SF LTHKSPSKRPSNFAARVSLSGKP+P
Sbjct: 1   MPIFAATTLGSLSAHSFLSLLASTDASHSLSSSFVLTHKSPSKRPSNFAARVSLSGKPEP 60

Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL
Sbjct: 61  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 120

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV
Sbjct: 121 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 180

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR- 274
           GVGDVYEARVGSVEDYGAFVHLRFSDG YHLTGLVHISEVSWDLVQDVRDILSEGDEVR 
Sbjct: 181 GVGDVYEARVGSVEDYGAFVHLRFSDGFYHLTGLVHISEVSWDLVQDVRDILSEGDEVRV 240

Query: 275 ---------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI 334
                    SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI
Sbjct: 241 KVLDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTI 300

Query: 335 FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 FEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNA 336

[Close]

BLAST of Cp4.1LG03g12690 vs. ExPASy TrEMBL
Match: A0A1S3BXL4 (30S ribosomal protein S1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494553 PE=4 SV=1)

HSP 1 Score: 513 bits (1320), Expect = 3.97e-179
Identity = 280/347 (80.69%), Postives = 300/347 (86.46%), Query Frame = 0


Query: 27  FPSHSPPNMPIFAATTLGSLSAHSFLALSAST-DASN--SLSTSFFLTHKSPSKRPSNFA 86
           FP   P  MPIF AT + S+S HSFL+L AST DAS+  S S+S  L  KSPSKRPS F 
Sbjct: 37  FPLSIPIIMPIFLAT-IASVSTHSFLSLLASTSDASSTSSSSSSSILPLKSPSKRPSIFP 96

Query: 87  ARVSLSGKPDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGL 146
           +RVSLSGKPDPIAGVL+   +SPESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGL
Sbjct: 97  SRVSLSGKPDPIAGVLD---TSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGL 156

Query: 147 LVRFYSLVGFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEK 206
           LVRFYSL+GFLPFP LSP+HSCKEP KSIQDIAKSL GSLI VKVIQADE+NK LIFSEK
Sbjct: 157 LVRFYSLMGFLPFPQLSPSHSCKEPNKSIQDIAKSLTGSLISVKVIQADERNKKLIFSEK 216

Query: 207 EAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVR 266
           EA WSKFS QVGVGDVYEA+VGS+EDYGAFVHLRFSDGLYHLTGLVH+SEVSWDLVQDVR
Sbjct: 217 EATWSKFSGQVGVGDVYEAKVGSLEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVR 276

Query: 267 DILSEGDEV----------RSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDS 326
           DILSEGDEV          +SRITLSI+QLEEDPLLETLDKVIPQD SAEPDSFGPKSDS
Sbjct: 277 DILSEGDEVTVKVINVDRDKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKSDS 336

Query: 327 EIIPLPGLDTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           EIIPLPGL TI EEL QEEGI DV +NRQGFEKRVVSQDLQLWLSN+
Sbjct: 337 EIIPLPGLGTIIEELQQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNA 379

[Close]

BLAST of Cp4.1LG03g12690 vs. ExPASy TrEMBL
Match: A0A0A0KTX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012510 PE=4 SV=1)

HSP 1 Score: 510 bits (1314), Expect = 6.78e-179
Identity = 278/339 (82.01%), Postives = 298/339 (87.91%), Query Frame = 0


Query: 35  MPIFAATTLGSLSAHSFLALSAST-DASN--SLSTSFFLTHKSPSKRPSNFAARVSLSGK 94
           MPIF AT + S+SAHSFL+L AST DAS+  S S+SF L  KSPSKR S F +RVSLSGK
Sbjct: 1   MPIFVAT-IASVSAHSFLSLLASTSDASSTSSSSSSFILPLKSPSKRSSIFPSRVSLSGK 60

Query: 95  PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 154
           PDPIAGVL+   +SPESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGLLVRFYSLV
Sbjct: 61  PDPIAGVLD---TSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLV 120

Query: 155 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 214
           GFLPFP LSP+HSCKEPYKSIQDIAKSLIGSLI VKVIQADEKN+ LIFSEKEAA SKFS
Sbjct: 121 GFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFS 180

Query: 215 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 274
            QV VGDVYE +VGSVEDYGAFVHLR SDGLYHLTGLVH+SEVSWDLVQDVRDILSEGDE
Sbjct: 181 GQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDE 240

Query: 275 V----------RSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 334
           V          +SRITLSI+QLEEDPLLETLDKVIPQ+ SAEPDSFGPK DSEIIPLPGL
Sbjct: 241 VTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQESSAEPDSFGPKGDSEIIPLPGL 300

Query: 335 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           +TI EELLQEEGI DV +NRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 ETIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNA 335

[Close]

BLAST of Cp4.1LG03g12690 vs. ExPASy TrEMBL
Match: A0A6J1CUJ6 (uncharacterized protein LOC111014714 OS=Momordica charantia OX=3673 GN=LOC111014714 PE=4 SV=1)

HSP 1 Score: 509 bits (1311), Expect = 1.87e-178
Identity = 271/339 (79.94%), Postives = 297/339 (87.61%), Query Frame = 0


Query: 35  MPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHK--SPSKRPSNFAARVSLSGKP 94
           MPI  AT LGSLS +SFL+  ASTD+S     S  LTH   SPSKR  NF  R+SL   P
Sbjct: 1   MPICTAT-LGSLSPYSFLSHFASTDSS----PSSILTHNHNSPSKRSPNFPPRLSLPANP 60

Query: 95  DPIAGVLES-SPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 154
           DPIAGVL++ SP+SPES+ R+RRS DWK AREYLDSGFI++GRIEGSNAGGLLVRF+SLV
Sbjct: 61  DPIAGVLDTTSPASPESLPRSRRSEDWKAAREYLDSGFIYEGRIEGSNAGGLLVRFHSLV 120

Query: 155 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 214
           GFLPFP LSP+HSCKEPYKSIQDIAKSL+GS++PVK+IQADE+NK LIFSEKEAAWSKFS
Sbjct: 121 GFLPFPQLSPSHSCKEPYKSIQDIAKSLLGSIVPVKIIQADERNKKLIFSEKEAAWSKFS 180

Query: 215 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 274
           EQV VG+VY+ARVGSVEDYGAFVHLRFSDGLYHLTGLVH+SEVSWDLVQDVRDILSEGDE
Sbjct: 181 EQVSVGEVYDARVGSVEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDE 240

Query: 275 VR----------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 334
           VR          SRITLSIKQLEEDPLLETLDKVIPQD SAEPDSFGP+SDSEIIPLPGL
Sbjct: 241 VRVKVINVDREKSRITLSIKQLEEDPLLETLDKVIPQDGSAEPDSFGPRSDSEIIPLPGL 300

Query: 335 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 360
           +TIFEELLQE+GIEDV +NRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 ETIFEELLQEDGIEDVRVNRQGFEKRVVSQDLQLWLSNA 334

[Close]

BLAST of Cp4.1LG03g12690 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 346.3 bits (887), Expect = 3.0e-95
Identity = 197/349 (56.45%), Postives = 236/349 (67.62%), Query Frame = 0


Query: 35  MPIFA-ATTLGSLS--AHSF----------LALSASTDASNSLSTSFFLTHKSPSKRPSN 94
           M +F+ ATTLGS+S  +H F          L L  S+ +S+S   S     KS S   + 
Sbjct: 1   MAVFSGATTLGSVSFASHLFDQQSTFLSCPLRLLPSSSSSSSNRNSLVCIVKSFSSSATA 60

Query: 95  FAARVSLSGKPDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAG 154
              R S       +     S          A   +DWKTA+ Y  SG  F+G ++G N G
Sbjct: 61  DTDRNSDQSASSSVLSASNSLLRDTSDEASAAGPSDWKTAKAYCKSGDTFEGEVQGFNGG 120

Query: 155 GLLVRFYSLVGFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFS 214
           GLL+RF+SLVGFLP+P LSP+ SCKEP KSI +IAK+L+GS +PVKV+QADE+N+ LI S
Sbjct: 121 GLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILS 180

Query: 215 EKEAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQD 274
           EK A W K+S+ V VGDV+  RVGSVEDYGAF+HLRF DGLYHLTGLVH+SEVSWD VQD
Sbjct: 181 EKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQD 240

Query: 275 VRDILSEGDEVR----------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKS 334
           VRD+L +GDEVR          SRITLSIKQLE+DPLLETLDKVI +D S    S    +
Sbjct: 241 VRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNN 300

Query: 335 DSEIIPLPGLDTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 361
              I PLPGL+TI EELL+E+GIE V INRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 GDTIEPLPGLETILEELLKEDGIEAVKINRQGFEKRVVSQDLQLWLSNT 349

[Close]

BLAST of Cp4.1LG03g12690 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-18
Identity = 61/203 (30.05%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           I G  ES  S   S+R  +    W+  R+      I K ++ G+N GGL+     L GF+
Sbjct: 154 IIGENESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFV 213

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PF  +S   + +E           L+   IP+K ++ DE+   L+ S ++A  +    Q+
Sbjct: 214 PFSQISSKAAAEE-----------LLEKEIPLKFVEVDEEQTKLVLSNRKAV-ADSQAQL 273

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV-- 274
           G+G V    V S++ YGAF+ +        + GL+H+S++S D V D+  +L  GD +  
Sbjct: 274 GIGSVVLGVVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKV 333

Query: 275 --------RSRITLSIKQLEEDP 288
                   R R++LS K+LE  P
Sbjct: 334 MILSHDRDRGRVSLSTKKLEPTP 338

[Close]

BLAST of Cp4.1LG03g12690 vs. TAIR 10
Match: AT5G14580.1 (polyribonucleotide nucleotidyltransferase, putative )

HSP 1 Score: 46.2 bits (108), Expect = 6.5e-05
Identity = 35/103 (33.98%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 194 KNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISE 253
           KN++++   +E        ++ VG VY+  V S+++YGAFV   F  G     GL+H+SE
Sbjct: 655 KNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFV--EFPGG---QQGLLHMSE 714

Query: 254 VSWDLVQDVRDILSEGD---------EVRSRITLSIKQLEEDP 288
           +S + V  V D+L  G          +VR  I LS K L   P
Sbjct: 715 LSHEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLPKP 752

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g12690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29344	3.8e-18	30.05	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
Q93VC7	5.5e-17	30.05	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]
P74142	1.1e-12	24.19	30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
P51345	9.1e-12	26.98	30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps1 PE=...	[more]
Q1XDE2	2.0e-11	25.81	30S ribosomal protein S1, chloroplastic OS=Pyropia yezoensis OX=2788 GN=rps1 PE=...	[more]

BLAST of Cp4.1LG03g12690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526022.1	2.96e-224	96.76	LOW QUALITY PROTEIN: uncharacterized protein LOC111789621 [Cucurbita pepo subsp....	[more]
XP_022955545.1	1.90e-220	94.99	LOW QUALITY PROTEIN: uncharacterized protein LOC111457527 [Cucurbita moschata]	[more]
KAG7018465.1	6.75e-219	95.24	30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022979820.1	3.19e-217	94.64	uncharacterized protein LOC111479406 [Cucurbita maxima]	[more]
KAG6582039.1	2.62e-216	94.35	30S ribosomal protein S1, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Cp4.1LG03g12690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVD7	9.18e-221	94.99	LOW QUALITY PROTEIN: uncharacterized protein LOC111457527 OS=Cucurbita moschata ...	[more]
A0A6J1IUF3	1.55e-217	94.64	uncharacterized protein LOC111479406 OS=Cucurbita maxima OX=3661 GN=LOC111479406...	[more]
A0A1S3BXL4	3.97e-179	80.69	30S ribosomal protein S1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494553 PE=4...	[more]
A0A0A0KTX2	6.78e-179	82.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012510 PE=4 SV=1	[more]
A0A6J1CUJ6	1.87e-178	79.94	uncharacterized protein LOC111014714 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Cp4.1LG03g12690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23700.1	3.0e-95	56.45	Nucleic acid-binding proteins superfamily	[more]
AT5G30510.1	3.9e-18	30.05	ribosomal protein S1	[more]
AT5G14580.1	6.5e-05	33.98	polyribonucleotide nucleotidyltransferase, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 215..281 e-value: 5.3E-8 score: 42.6 coord: 126..203 e-value: 5.4E-4 score: 29.3
None	No IPR available	GENE3D	2.40.50.140		coord: 118..210 e-value: 5.0E-8 score: 34.9
None	No IPR available	GENE3D	2.40.50.140		coord: 211..290 e-value: 3.7E-16 score: 61.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..113
None	No IPR available	PANTHER	PTHR47559	OS03G0844900 PROTEIN	coord: 38..360
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 215..277 e-value: 6.5E-11 score: 42.4
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 128..203 score: 12.079132
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 217..276 score: 13.744028
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 126..203
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 216..294

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g12690.1	Cp4.1LG03g12690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0000481	maturation of 5S rRNA
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0034337	RNA folding
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding