Cp4.1LG03g09990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g09990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG03: 11831632 .. 11832015 (-)
RNA-Seq ExpressionCp4.1LG03g09990
SyntenyCp4.1LG03g09990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCGGCGGCGGAGGCATGGCCGGAGACAGCGGCGATGGTGGGCATGGGGAGAGAGAGAAGAGCGGCGGCGACTTGCTTGAAGATGTGGACGAGGTGGAGTATGCGGTCTGTAGCGGCGGATTTGGAGGCGGCGGTTAGGGTCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAGCGGCCATGGGAAGTGGTGAGGAGGACTGAACCGCGAGTGGCTTGGGACTTGACTTGGGCGAGAAGAGAGAGGAAGGAGGAAATGAAGGTGGGGCCGATCCAGTGCTCGTTGTCGCCGGTGAGGGTCAGGATGAAGACACCGCCACGCTTCTCTAGAGTGCACATGTCGTTTCATGCAAATGGTCTATTCAACTTTTTTGTTGTGTAA

mRNA sequence

ATGAAACCGGCGGCGGAGGCATGGCCGGAGACAGCGGCGATGGTGGGCATGGGGAGAGAGAGAAGAGCGGCGGCGACTTGCTTGAAGATGTGGACGAGGTGGAGTATGCGGTCTGTAGCGGCGGATTTGGAGGCGGCGGTTAGGGTCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAGCGGCCATGGGAAGTGGTGAGGAGGACTGAACCGCGAGTGGCTTGGGACTTGACTTGGGCGAGAAGAGAGAGGAAGGAGGAAATGAAGGTGGGGCCGATCCAGTGCTCGTTGTCGCCGGTGAGGGTCAGGATGAAGACACCGCCACGCTTCTCTAGAGTGCACATGTCGTTTCATGCAAATGGTCTATTCAACTTTTTTGTTGTGTAA

Coding sequence (CDS)

ATGAAACCGGCGGCGGAGGCATGGCCGGAGACAGCGGCGATGGTGGGCATGGGGAGAGAGAGAAGAGCGGCGGCGACTTGCTTGAAGATGTGGACGAGGTGGAGTATGCGGTCTGTAGCGGCGGATTTGGAGGCGGCGGTTAGGGTCCAGGGAAGGTCGAAGCCGTTGGAGAAGAAGCGGCCATGGGAAGTGGTGAGGAGGACTGAACCGCGAGTGGCTTGGGACTTGACTTGGGCGAGAAGAGAGAGGAAGGAGGAAATGAAGGTGGGGCCGATCCAGTGCTCGTTGTCGCCGGTGAGGGTCAGGATGAAGACACCGCCACGCTTCTCTAGAGTGCACATGTCGTTTCATGCAAATGGTCTATTCAACTTTTTTGTTGTGTAA

Protein sequence

MKPAAEAWPETAAMVGMGRERRAAATCLKMWTRWSMRSVAADLEAAVRVQGRSKPLEKKRPWEVVRRTEPRVAWDLTWARRERKEEMKVGPIQCSLSPVRVRMKTPPRFSRVHMSFHANGLFNFFVV
Homology
BLAST of Cp4.1LG03g09990 vs. NCBI nr
Match: XP_042942924.1 (uncharacterized protein LOC122277109 [Carya illinoinensis])

HSP 1 Score: 78.2 bits (191), Expect = 1.37e-15
Identity = 52/96 (54.17%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 12  AAMVGMGRERRAAATCLK---MWTRWSMRSVAADLEAAVRVQGRSKPLEKKRPWEVVRRT 71
           AAMVG+G ER A AT LK   MW  WS+  V  + + A   Q RS PLEK  PW V+ R 
Sbjct: 2   AAMVGIGSERSAEATGLKDSTMW--WSLLRVPEE-DLAAWAQDRSNPLEKNLPWAVLVRV 61

Query: 72  EPRVAWDLTWARRERKEEMKVGPIQCSLSPVRVRMK 104
           E R AWDLTW R E +E M VG  +CS SPV VR K
Sbjct: 62  ESRTAWDLTWERIEMRE-MTVGLKRCSPSPVSVRKK 93

BLAST of Cp4.1LG03g09990 vs. NCBI nr
Match: ONK66958.1 (uncharacterized protein A4U43_C06F14000 [Asparagus officinalis])

HSP 1 Score: 52.4 bits (124), Expect = 1.50e-05
Identity = 36/85 (42.35%), Postives = 44/85 (51.76%), Query Frame = 0

Query: 17  MGRERRAAATCLKMWTRWSMRSVAADLEAAVRVQGRSKPLEKKRPWEVVRRTEPRVAWDL 76
           MGRERR    CL    R   RS     E  +R   RSKPLEK  P   + R E     DL
Sbjct: 1   MGRERREERVCLGREERSGPRS-----EKDLRAHSRSKPLEKNLPSPAITRAEGDFGSDL 60

Query: 77  TWARRERKEEMKVGPIQCSLSPVRV 101
                E +EEM+VG  +CS++PV+V
Sbjct: 61  ICVMAEWREEMRVGLRRCSVAPVKV 80

BLAST of Cp4.1LG03g09990 vs. ExPASy TrEMBL
Match: A0A0A0L773 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.32e-12
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 43  LEAAVRVQGRSKPLEKKRPWEVVRRTEP--RVAWDLTWARRERKEEMKVGPIQCSLSPVR 102
           +E A R+ GRS+PLEK  PW+VV RTEP   +A  LTW R    E +K G  QCS  PV 
Sbjct: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 103 VRMKTPPRFSRVHM 114
           VRM + PRFS +H+
Sbjct: 61  VRMNSFPRFSILHI 74

BLAST of Cp4.1LG03g09990 vs. ExPASy TrEMBL
Match: A0A5P1ELS2 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F14000 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.24e-06
Identity = 36/85 (42.35%), Postives = 44/85 (51.76%), Query Frame = 0

Query: 17  MGRERRAAATCLKMWTRWSMRSVAADLEAAVRVQGRSKPLEKKRPWEVVRRTEPRVAWDL 76
           MGRERR    CL    R   RS     E  +R   RSKPLEK  P   + R E     DL
Sbjct: 1   MGRERREERVCLGREERSGPRS-----EKDLRAHSRSKPLEKNLPSPAITRAEGDFGSDL 60

Query: 77  TWARRERKEEMKVGPIQCSLSPVRV 101
                E +EEM+VG  +CS++PV+V
Sbjct: 61  ICVMAEWREEMRVGLRRCSVAPVKV 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_042942924.11.37e-1554.17uncharacterized protein LOC122277109 [Carya illinoinensis][more]
ONK66958.11.50e-0542.35uncharacterized protein A4U43_C06F14000 [Asparagus officinalis][more]
Match NameE-valueIdentityDescription
A0A0A0L7739.32e-1252.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141800 PE=4 SV=1[more]
A0A5P1ELS27.24e-0642.35Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F14000 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g09990.1Cp4.1LG03g09990.1mRNA