Cp4.1LG03g08950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g08950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG03: 5755110 .. 5756583 (-)
RNA-Seq Expression	Cp4.1LG03g08950
Synteny	Cp4.1LG03g08950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTCTTTTTGTTAATTGGAGATGATTATTAGGATAATGTGCACAACCATTGGATCCAGTTCTATTTTCCATTTTGTTCTTAGCGACGTTTTGGTGTATGATGATGATTTTCTCTCTGTTGCTATTTGGCATGCGTTTTAACGAGTTGTTGAGGATGTGGAGATGTACTCTGTGTTTGATTTTCTTTTTAGTTGAAACTATTGAGCGATGTTTATGGATTTGAAGTTGTGTTGAGCGGATGCCTGATAAGATCTCATGTGGCTGGTTTTCAATTAGCTTTATTTGAGGTTGCATAAATTATATGCAGTCTCGTAGGATCTCTATGGTGGAGCGAGTACAAATTTTTCGAGTTTAGGTTCATTTACATCGGTTACTTGGTGCTGTTTGCTCATGGATCAGTGATCTTGGATTATTTTGCTGTTCTAACTTCAATGTTGACTTGAAAAATAAAACAGTTCGAATTGCTTTTTATTGTATGAGTTAACTTTTGAATTTCTAGTTAAAAGTCATGCGATCTAATAAAATCACAAATGTTTTGTGTATCTACAAGTCTTAATACATGATTCAAATTTTGTTGCATTGTATCTTCTCTAGAATTCAACAAATCTGCAAGTTCAAATCTCCAAGAACTAATGTTTTGGCCAAGCTTTCAAGGATTTTATTGTTTCATGCATTTCAAGATGCTTTGTTGTGCTGCAGATTTAATTGTCATCTTACCACTTCAAATTCTTATATATTTAAACGGAATCTGAATTTATTGAAATGCTTGTTGAAGAGAAGGGCTCGTGTTGATATCTATTTAAACTTGACCATCTTTTGCTCTTGTAGAAGATTCTGCGTTTGGAGCTACATTTCAGAGCACAGAGGAAGATTAGTGCTCTTGAACATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGATACATAGGGACCTCAAGGTACAAAACCTTCTCATGTATTGGTTCTTCTCTTTGGTGGGATCTGTATTTATAAACAATTGAAGATTGCCATAGGCCAAAAGTTCATTCATCCATTTTGATTCACATATATATATAGCATATAAGATGTAGCAGAATGTCATGAACATTGCTTCCTTGCATTAATTTGATATTTTTGTTCGTTTCTTCTTTTTGATGATGGGTTTGTAATTAAAAGTTCAATCAGAATGTTCATATTATTGTCATTACAATAATAGATGGGAACTACTGCTCATACCC

mRNA sequence

ATGCGAAGATTCTGCGTTTGGAGCTACATTTCAGAGCACAGAGGAAGATTAGTGCTCTTGAACATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGATACATAGGGACCTCAAGGTACAAAACCTTCTCATGTATTGGTTCTTCTCTTTGGTGGGATCTGTATTTATAAACAATTGAAGATTGCCATAGGCCAAAAGTTCATTCATCCATTTTGATTCACATATATATATAGCATATAAGATGTAGCAGAATGTCATGAACATTGCTTCCTTGCATTAATTTGATATTTTTGTTCGTTTCTTCTTTTTGATGATGGGTTTGTAATTAAAAGTTCAATCAGAATGTTCATATTATTGTCATTACAATAATAGATGGGAACTACTGCTCATACCC

Coding sequence (CDS)

ATGCGAAGATTCTGCGTTTGGAGCTACATTTCAGAGCACAGAGGAAGATTAGTGCTCTTGAACATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCACTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGA

Protein sequence

MRRFCVWSYISEHRGRLVLLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL

Homology

[Close]

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: XP_023526662.1 (uncharacterized protein LOC111790093 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229 bits (585), Expect = 2.75e-75
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 3   RFCVWSYISEHRGRLVLLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLT 62
           RFCVWSYISEHRGRLVLLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLT
Sbjct: 39  RFCVWSYISEHRGRLVLLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLT 98

Query: 63  ALALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           ALALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL
Sbjct: 99  ALALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 152

[Close]

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: XP_023526663.1 (uncharacterized protein LOC111790093 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228 bits (580), Expect = 1.54e-74
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 4   FCVWSYISEHRGRLVLLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTA 63
           FCVWSYISEHRGRLVLLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTA
Sbjct: 39  FCVWSYISEHRGRLVLLNMVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTA 98

Query: 64  LALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           LALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL
Sbjct: 99  LALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 151

[Close]

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: XP_022983433.1 (uncharacterized protein LOC111482039 [Cucurbita maxima])

HSP 1 Score: 187 bits (475), Expect = 2.57e-59
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL
Sbjct: 1   MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           GAAVSSCSGLTGAQ+ELCRLEHAEASLGKGKFKFL
Sbjct: 61  GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 95

[Close]

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: XP_022935068.1 (uncharacterized protein LOC111442048 [Cucurbita moschata] >KAG6581616.1 hypothetical protein SDJN03_21618, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (473), Expect = 5.18e-59
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVLESILSSPHRRHPPFRKQFPANELGSWS LFNRHRFLLTALALLTLLCTIYLYFAITL
Sbjct: 1   MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL
Sbjct: 61  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 95

[Close]

BLAST of Cp4.1LG03g08950 vs. NCBI nr
Match: KAG7018114.1 (hypothetical protein SDJN02_19982, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172 bits (437), Expect = 1.10e-52
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVLESILSSPHRRHPPFRKQFPANELGSWS LFNRHRFLLTALALLTLLCTIYLYFAITL
Sbjct: 1   MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLG 109
           GAAVSSCSGLTGAQKELCRLEHAEASLG
Sbjct: 61  GAAVSSCSGLTGAQKELCRLEHAEASLG 88

[Close]

BLAST of Cp4.1LG03g08950 vs. ExPASy TrEMBL
Match: A0A6J1J7R5 (uncharacterized protein LOC111482039 OS=Cucurbita maxima OX=3661 GN=LOC111482039 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 1.24e-59
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL
Sbjct: 1   MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           GAAVSSCSGLTGAQ+ELCRLEHAEASLGKGKFKFL
Sbjct: 61  GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 95

[Close]

BLAST of Cp4.1LG03g08950 vs. ExPASy TrEMBL
Match: A0A6J1F9I3 (uncharacterized protein LOC111442048 OS=Cucurbita moschata OX=3662 GN=LOC111442048 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 2.51e-59
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVLESILSSPHRRHPPFRKQFPANELGSWS LFNRHRFLLTALALLTLLCTIYLYFAITL
Sbjct: 1   MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL
Sbjct: 61  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 95

[Close]

BLAST of Cp4.1LG03g08950 vs. ExPASy TrEMBL
Match: A0A6J1DJ35 (uncharacterized protein LOC111020959 OS=Momordica charantia OX=3673 GN=LOC111020959 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 3.03e-51
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SIL+SPHRR P FRKQFPANELGSWS LFNRHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSVLFNRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           GA  SSCSGLTGAQKELCR+EHA+ASL KGK KFL
Sbjct: 61  GATASSCSGLTGAQKELCRMEHAKASLAKGKLKFL 95

[Close]

BLAST of Cp4.1LG03g08950 vs. ExPASy TrEMBL
Match: A0A0A0L9L6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 2.49e-50
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SIL+SPHRR P FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1   MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           GA  SSCSGLTG Q+ELCRLEHA+ASL KGK KFL
Sbjct: 61  GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

[Close]

BLAST of Cp4.1LG03g08950 vs. ExPASy TrEMBL
Match: A0A6J1GA22 (uncharacterized protein LOC111452323 OS=Cucurbita moschata OX=3662 GN=LOC111452323 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 5.03e-50
Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+SIL+SP RR P FRKQFPANELGSWSTLFNRHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1   MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 116
           GA  SSCSGLTGAQKELC LEHA+ASL KGK KFL
Sbjct: 61  GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of Cp4.1LG03g08950 vs. TAIR 10
Match: AT1G16170.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-23
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+ ++SSP RR    +KQ+  +ELGSWSTL  RH++LLTALALL  LCT+YLYFA+TL
Sbjct: 1   MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 116
           GA  SSC GLTG  K +C+L+  +A L KGK KF
Sbjct: 61  GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

[Close]

BLAST of Cp4.1LG03g08950 vs. TAIR 10
Match: AT1G79660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 4.1e-22
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 22  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 81
           MVL+ I+SSP RR    +KQ+  ++LGS ST+  RHRFLLTA+ LL  LCTIY+YFA+TL
Sbjct: 1   MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 82  GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 116
           GA    CSG+TG  K +C++EH +AS   GK KF
Sbjct: 61  GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g08950 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g08950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526662.1	2.75e-75	100.00	uncharacterized protein LOC111790093 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023526663.1	1.54e-74	100.00	uncharacterized protein LOC111790093 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022983433.1	2.57e-59	98.95	uncharacterized protein LOC111482039 [Cucurbita maxima]	[more]
XP_022935068.1	5.18e-59	98.95	uncharacterized protein LOC111442048 [Cucurbita moschata] >KAG6581616.1 hypothet...	[more]
KAG7018114.1	1.10e-52	98.86	hypothetical protein SDJN02_19982, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG03g08950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7R5	1.24e-59	98.95	uncharacterized protein LOC111482039 OS=Cucurbita maxima OX=3661 GN=LOC111482039...	[more]
A0A6J1F9I3	2.51e-59	98.95	uncharacterized protein LOC111442048 OS=Cucurbita moschata OX=3662 GN=LOC1114420...	[more]
A0A6J1DJ35	3.03e-51	87.37	uncharacterized protein LOC111020959 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L9L6	2.49e-50	86.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1	[more]
A0A6J1GA22	5.03e-50	87.37	uncharacterized protein LOC111452323 OS=Cucurbita moschata OX=3662 GN=LOC1114523...	[more]

BLAST of Cp4.1LG03g08950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16170.1	1.7e-23	60.64	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G79660.1	4.1e-22	56.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774	EPHRIN-A3 PROTEIN	coord: 17..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g08950.1	Cp4.1LG03g08950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome