Cp4.1LG03g05940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g05940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	double-stranded RNA-binding protein 4-like isoform X1
Location	Cp4.1LG03: 4494120 .. 4498632 (+)
RNA-Seq Expression	Cp4.1LG03g05940
Synteny	Cp4.1LG03g05940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCATCACTATCTCATCCTAATTGGGAGGATAAAAAACCCTCGCCCACCCTTCACAGTCCACAGACCGGAAATTTCCCCTGCTGTTCATTCATTGCCATTGCCCAATTCTTCCCATTTCAATTTGTTCTCATCGAGTTTCGATAACATTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCGTAAGTCTATGGTATTGTTGTCTATCATTGTTTTTTAGGCGTTTTGATTGTTACGGTTTAGTGCTTTTATTTGAGCTAATGCTGCTGTTAGATGATGGATTTCCTCTTCATTTGGTGCATGAAGTTTTCTAGCTGTTTTTTTGTTTCTGTTATAGAGAGAAGCAATTGCATTCCTTCTGTGAGTTCGCGTGGTGCCTGTCTGTGTGTTGAAAAGATAACTCTGTTTTTCTGTATGTATCTACGAAGAGGTCCTGAGAATTCAATCTTAAGTTGCTATGTTTACTTTCATTTTCTTTTCACAATCTTTGGACGCTGGATTATTTTGCGAGTTTGAATACTGGCAGCTGTGTGGTGATGGTCTAGAGATTCCTTCTTTGTTCAGTTAAAAAAAATTGGTGGAAAAATTCTCTAGAAGAAATGTTCTATGTGGTTCTTAGCGCTTCTTAATTGAATCCTAGCCTATCACCTTGCCCTCGATCCCTAGTGGTGTGGCATTCGCGAAAAGAATAGTGAGATTTAAATCACCTATTTATTCGTATTTCCTATATACTGTTCCTACACTCTCTGGTGTGCTCGATGAGAGATGGATAAACTAAGGACTAATCACTTCAGGCACTAGCTGGTCCTCATTGGAGCAACAAACCCGAATTCTGTGGGGGTTTACTGTCATAGCTCTCTGTTTTGATCTGACAATGAGGACTCTTTCTTTGAAGACCAGTTTCTTGACAATCCTGTGGTGGGTTTAACTCGTAAGTAACCAGATAAGCCTCGAAGAAGTGAAAGATAAATGGGAGGATGTTCTGAATTTTGATCATTTTATTATTGTTCCTTTTCTTTTGCATCTCTCTTGATTTTTCTATTTTCTGTGATTAAAGATGTAGGAGCCTTTTCTTATAATTTCTTTTGCTAGTTCTGCATCTTGGTTTGGCACTCAGGGCTTTGTTATTGTATGGTCTTTTTCTACTTCCATTGCCCTCAACGAAAGTATTAAAAAAGAAAGGGAAAAAAAAAAACTAAGTCATTTACTGAAGTGGAGAGTTTTTCAATATTGGACTTGTCTGGGTACTTATTTGATCTGACGTTGCGGATTGGGGATTTTTGTAATTTTCCACAGCATGGACTCTTCTACTGTCCCGCCTTTCTCTTTCGGGCTGTAATTTGATTATTTATATTTTAATCTAGTTGCCTAATAAAAGTAAAGGTTCCCCACAGTTCTAGTGTAAAGAAATTTGTTATTTGGTGGATCTTTGTTTTCTTGATAAGAACAGAAAAGAAATTAATGTTATGGCTTTCTTTTACTTGGTTTTGCAGAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCGTACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCACGAGGTATGACTTATATGATGAGACTGAAACTTGTTTGGTGGCCTTTGATTTTTAGCATGCTTGTTTCTTTATGTATTTATTTTTATTTTAGGCAACATTGTGGGGGAAATTTAAACCTTCTAAACTTAATGGAAGAAATAGATGCTTTGAGACCACTATATTATGCTCATGTTGGCTATATTTTTGCTTGTTTAGTTGATTATAGACGCAATTCAATGATGAGATTTCCTACCTAGACTTTCGGTTTGTTACAAATAAGTTTTTATGTATGGAGATTACCTTTTGTAATTTTCTTTCGCAATGTGTACAATAACTTATTTGAATCCAACAGAAACAGTAATTTCTACCTGATATATTTGTTATTGTTCGTGGATGAAAAAATCTTAGTAATAATTGCATGTAATCACTTATGTTGTATAAGATTTCTCATAGTCATAGTCATCGACATTCTCGAAGGTTGGAATTTATCTAATTGATTTAGTGATAAGGCATTTAGTCTGTCTGAATAAGAAGTTCAGAAATGATGCCTTCGGGAATGAGGTTGTGAGACACCGTTTGCTTTTGTTTGTAGTTCACAGGGATAGGATTCAAATGTATGAGAGAGATAAGCGCAAAAGAATTATAAAAGGGGCTCCAATTGCTAACGTCCTTAGTGATAGAAGTCCAATTGAGAAGTTGAACCTAGCCATGGCTTACACCCATTCCCAAGGACATTCCTTTTCAAGACTCCCCTATTTCTCTCGAGCCAAATGTTCCATAAATTCACAAAAGTAAGCAGTCTGTCAAAAGAAATCCCTCTGTTGCATGCTTATAATTTTGATTGTGCCTTATACTTATTTTCTTATTGGTCTTTAATGTTCTGAATGTTTGTTCATGCTGTGTTACGATATTGATTATTGTGTACCAGCACTTCACTAATGGTATTAAATATTGACATGTTGAAAGAAAACATACATATATTTGATTGCTATACTTTATATTGACTTCGAATCTGATATACAAACTATGTCATTTGTTCTTATTTCAGGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAGCATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTCATGGTATTTAATTGTTGGAAACAACTTCTGAATTATTTCAAGATACTCGGTGCCTTGTCAAAGTTGCTTTTATTAAATGATAATAATAATAGTTATTGCTACTATTACTTTGTAGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCCCAAATTCAACCGAAATATCTGCCTGAAAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGCCAATATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGTGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGTAAGTCTTCCTCCATTATCTTTTTTCATGAAACTACATCTAACTTTATAATGTATCTTCTCGTTGTTTAGGGTATTACATAATTGTTTACAGTAAACTCCAGTCTTGTTACAACTAGAGCTCTTCAATTTGCACATTCATGTTGACGACAAATTTCTGCATTAAGACTACTAGGCTGCAATTTCTTTCAATGAAAAGTTTATTTATTATTACACTATTTTGAAGTGATTGATATCCCTTCAATGTAGGATGTAGATTTAAATCATGGTAGTCATCAAAGATACTATAATATCTTACAACTTTCTTAATACTCCATATAGTATCTGGTAAGATTTGATAGTTGTGCCTATGACCAGTAGAGATTTACTTTACTTAATCTGAATGCTCACAATTGTTAAAAATGTAAAGGAAACTGAGGGTCTTTCTTGGTTTTTGTGTATGATATATGTGATATTTTGGGCTACATGATAAGAAAGATGGCATGTCCCCTCGAGTCCTGCGATGTTTTACACGAATAATATTAATTTGCGCTTCTTATGTGTAAGTTATTTCAATAGTATAACCAAATCTTCTTTTGCTAAAATGAGCAGGGTGGCAACGGGGACGAGTCAAACTGCTCCTTGCTCCATAGCTCAATGACCGTAAAGTATCCTGTATTATAAGTGCTCTTCTGCTTCAAAGGTAACATTTAAGAGTAGTTTTGAGTATGAATACCATGAATTCGAGATTCCGCTTCTGTTGTAGGTCTATGTTTGACATCGACCACGCGAGTACACGATCAGTCAGTTCATATGTGATTATAAAATATAGTGGTAGCTTTGTAGGCTGTCCTTAG

mRNA sequence

CGTCATCACTATCTCATCCTAATTGGGAGGATAAAAAACCCTCGCCCACCCTTCACAGTCCACAGACCGGAAATTTCCCCTGCTGTTCATTCATTGCCATTGCCCAATTCTTCCCATTTCAATTTGTTCTCATCGAGTTTCGATAACATTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCGTACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCACGAGGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAGCATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTCATGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCCCAAATTCAACCGAAATATCTGCCTGAAAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGCCAATATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGTGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGGTGGCAACGGGGACGAGTCAAACTGCTCCTTGCTCCATAGCTCAATGACCGTAAAGTATCCTGTATTATAAGTGCTCTTCTGCTTCAAAGGTAACATTTAAGAGTAGTTTTGAGTATGAATACCATGAATTCGAGATTCCGCTTCTGTTGTAGGTCTATGTTTGACATCGACCACGCGAGTACACGATCAGTCAGTTCATATGTGATTATAAAATATAGTGGTAGCTTTGTAGGCTGTCCTTAG

Coding sequence (CDS)

ATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCGTACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCACGAGGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAGCATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTCATGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCCCAAATTCAACCGAAATATCTGCCTGAAAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGCCAATATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGTGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGGTGGCAACGGGGACGAGTCAAACTGCTCCTTGCTCCATAGCTCAATGA

Protein sequence

MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVPISHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQVATGTSQTAPCSIAQ

Homology

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BLAST of Cp4.1LG03g05940 vs. ExPASy Swiss-Prot
Match: Q0IV63 (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-22
Identity = 77/229 (33.62%), Postives = 116/229 (50.66%), Query Frame = 0


Query: 47  PPSVLPDAILIPSTASAPVSSPKPSDLT------QLFLYKNHLHEYTQKSRIPLPVYQTF 106
           PP+ LP     P TA+   +SP P+  T        +++K+ L EY QK+ +  P Y TF
Sbjct: 4   PPTPLP-----PETAN---TSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTF 63

Query: 107 DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHED 166
            EG    P ++STVV++   Y S   F NR+AAEQ AA +AL  I K    +  +   ++
Sbjct: 64  KEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQE 123

Query: 167 LMLCKSILSEYTVKMSLKRPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQL 226
             LCK++L EY  KM+   P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  
Sbjct: 124 TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIK 183

Query: 227 AARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 269
           AAR A+L++       +      I+    R+   ++K+    P  ++ K
Sbjct: 184 AARTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPKPLKIK 223

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy Swiss-Prot
Match: Q0IQN6 (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-22
Identity = 77/229 (33.62%), Postives = 115/229 (50.22%), Query Frame = 0


Query: 47  PPSVLPDAILIPSTASAPVSSPKPSDLT------QLFLYKNHLHEYTQKSRIPLPVYQTF 106
           PP+ LP     P TA+   +SP P+  T        +++K+ L EY QK+ +  P Y TF
Sbjct: 4   PPTPLP-----PETAN---TSPAPNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTF 63

Query: 107 DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHED 166
            EG    P ++STVV++   Y S   F NR+AAEQ AA +AL  I K    +  +   ++
Sbjct: 64  KEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQE 123

Query: 167 LMLCKSILSEYTVKMSLKRPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQL 226
             LCK++L EY  KM+   P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  
Sbjct: 124 TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIK 183

Query: 227 AARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 269
           AAR A+L++       +      I+    R+   ++K     P  ++ K
Sbjct: 184 AARTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKVK 223

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy Swiss-Prot
Match: Q6YW64 (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB4 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.4e-22
Identity = 93/295 (31.53%), Postives = 151/295 (51.19%), Query Frame = 0


Query: 45  TRPPSVLPDAILIPSTAS-----APVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQT 104
           T  P  +  A+   +TA      AP+  P P        YK+ L EY Q++   LP+Y T
Sbjct: 5   TAEPLAVAVAVAHTATAGTDHSPAPLPPPPPH-----CNYKSKLQEYLQQANKQLPIYCT 64

Query: 105 FDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAK-----DDGF 164
             +G     K++STV+VD   + S    R  + AEQDAA++A + + ++ +      D F
Sbjct: 65  KCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAAKVAYDTLLERKETETDDTDVF 124

Query: 165 VLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKK 224
            L+ +D++  KSIL EYT K    +P Y+  + EGSV  + S++ F G  YTG  +R+KK
Sbjct: 125 ELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAARNKK 184

Query: 225 EAEQLAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMM-----QKVKDSHPSQIQPKY 284
           +AEQ AARAA+ SL       +  ++A+I+ SK +L   +      K  DS+P+    K 
Sbjct: 185 DAEQKAARAAVKSL----LATNYTSMAKIVRSKEKLIRAISPSGYNKGIDSNPTN---KK 244

Query: 285 LPENTVEHVTTTVNE--DKEVNGAILDNVVPISHLGPEFRSIKPV---ASSPSER 320
           LP   ++    ++ +  D E++   +   +    +  E   ++P    AS+PSE+
Sbjct: 245 LPFAPIKFTPPSIFKLYDGEIDMLSVPQALFAPLVAAEEPKVRPAAEPASNPSEQ 287

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy Swiss-Prot
Match: Q0DJA3 (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-22
Identity = 68/211 (32.23%), Postives = 107/211 (50.71%), Query Frame = 0


Query: 59  STASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDE 118
           +T+ AP+ +     +   +++K+ L EY QK+ +  P Y T  EG    P ++STVV++ 
Sbjct: 16  NTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINN 75

Query: 119 VHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLK 178
             Y S   F NR+AAEQ AA +AL  I K    +  +   ++  LCK++L EY  KM+  
Sbjct: 76  TSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYA 135

Query: 179 RPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQ 238
            P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  AAR A+L++       + 
Sbjct: 136 IPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSAN 195

Query: 239 KTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 269
                I+    R+   ++K     P  ++ K
Sbjct: 196 GATKYIVVPGKRVGKEVEKRPIETPKPLKAK 225

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy Swiss-Prot
Match: O04492 (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.6e-22
Identity = 64/167 (38.32%), Postives = 99/167 (59.28%), Query Frame = 0


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPN 125
           S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S  
Sbjct: 3   STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP 62

Query: 126 TFRNRRAAEQDAARIALEYISKKAKDDGFVL--LHEDLMLCKSILSEYTVKMSLKRPMYT 185
            F NR+AAEQ AA +AL  ++K ++    V   +HE   LCK++L EY  KM+   P+Y 
Sbjct: 63  GFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHE-TGLCKNLLQEYAQKMNYAIPLYQ 122

Query: 186 TKQHE--GSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSL 229
            ++ E  G V  F  T+   G+ YTG  +R+KK+AE  A R A+L++
Sbjct: 123 CQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168

[Close]

BLAST of Cp4.1LG03g05940 vs. NCBI nr
Match: XP_023526614.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526615.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 719 bits (1857), Expect = 3.83e-261
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVPIS 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVPIS
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVPIS 300

Query: 301 HLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV 360
           HLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV
Sbjct: 301 HLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV 360

Query: 361 ATGTSQTAPCSIAQ 374
           ATGTSQTAPCSIAQ
Sbjct: 361 ATGTSQTAPCSIAQ 374

[Close]

BLAST of Cp4.1LG03g05940 vs. NCBI nr
Match: XP_022935533.1 (double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 705 bits (1820), Expect = 1.67e-255
Identity = 366/374 (97.86%), Postives = 370/374 (98.93%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPP VLPDAILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVPIS 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+P+NTVEHVTTTVNEDKEVNGAILDNVV IS
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVAIS 300

Query: 301 HLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV 360
           HLGPEFRSIKP ASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV
Sbjct: 301 HLGPEFRSIKPEASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV 360

Query: 361 ATGTSQTAPCSIAQ 374
           ATGTSQTAPCSIAQ
Sbjct: 361 ATGTSQTAPCSIAQ 374

[Close]

BLAST of Cp4.1LG03g05940 vs. NCBI nr
Match: KAG6581214.1 (Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 698 bits (1802), Expect = 1.34e-252
Identity = 367/384 (95.57%), Postives = 371/384 (96.61%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPP VL DAILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLLDAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHE+TQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEFTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVP-- 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+PENTVEHVTTTVNEDKEVNGAILDNVV   
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHVTTTVNEDKEVNGAILDNVVACG 300

Query: 301 --------ISHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA 360
                   ISHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA
Sbjct: 301 AISEICPTISHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA 360

Query: 361 RKKLCMENQVATGTSQTAPCSIAQ 374
           RKKLCMENQVATGTSQTAPCSIAQ
Sbjct: 361 RKKLCMENQVATGTSQTAPCSIAQ 384

[Close]

BLAST of Cp4.1LG03g05940 vs. NCBI nr
Match: XP_022935532.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 697 bits (1799), Expect = 3.85e-252
Identity = 366/384 (95.31%), Postives = 370/384 (96.35%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPP VLPDAILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVP-- 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+P+NTVEHVTTTVNEDKEVNGAILDNVV   
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVACG 300

Query: 301 --------ISHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA 360
                   ISHLGPEFRSIKP ASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA
Sbjct: 301 AISEICPTISHLGPEFRSIKPEASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA 360

Query: 361 RKKLCMENQVATGTSQTAPCSIAQ 374
           RKKLCMENQVATGTSQTAPCSIAQ
Sbjct: 361 RKKLCMENQVATGTSQTAPCSIAQ 384

[Close]

BLAST of Cp4.1LG03g05940 vs. NCBI nr
Match: XP_022984142.1 (double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 681 bits (1758), Expect = 4.19e-246
Identity = 353/363 (97.25%), Postives = 359/363 (98.90%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPP VLP AILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVPIS 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+PENTVEHVTTTVNEDKEVNGAILDNVV IS
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHVTTTVNEDKEVNGAILDNVVAIS 300

Query: 301 HLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV 360
           HLGPE RSIKPVASSPSERLPIESVPSTSEEPVGDRATG+KKRSKNKRKARKKLCMENQV
Sbjct: 301 HLGPELRSIKPVASSPSERLPIESVPSTSEEPVGDRATGTKKRSKNKRKARKKLCMENQV 360

Query: 361 ATG 363
           ATG
Sbjct: 361 ATG 363

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy TrEMBL
Match: A0A6J1FAT0 (double-stranded RNA-binding protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442377 PE=4 SV=1)

HSP 1 Score: 705 bits (1820), Expect = 8.08e-256
Identity = 366/374 (97.86%), Postives = 370/374 (98.93%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPP VLPDAILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVPIS 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+P+NTVEHVTTTVNEDKEVNGAILDNVV IS
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVAIS 300

Query: 301 HLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV 360
           HLGPEFRSIKP ASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV
Sbjct: 301 HLGPEFRSIKPEASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV 360

Query: 361 ATGTSQTAPCSIAQ 374
           ATGTSQTAPCSIAQ
Sbjct: 361 ATGTSQTAPCSIAQ 374

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy TrEMBL
Match: A0A6J1F5U3 (double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442377 PE=4 SV=1)

HSP 1 Score: 697 bits (1799), Expect = 1.86e-252
Identity = 366/384 (95.31%), Postives = 370/384 (96.35%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPP VLPDAILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVP-- 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+P+NTVEHVTTTVNEDKEVNGAILDNVV   
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVACG 300

Query: 301 --------ISHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA 360
                   ISHLGPEFRSIKP ASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA
Sbjct: 301 AISEICPTISHLGPEFRSIKPEASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA 360

Query: 361 RKKLCMENQVATGTSQTAPCSIAQ 374
           RKKLCMENQVATGTSQTAPCSIAQ
Sbjct: 361 RKKLCMENQVATGTSQTAPCSIAQ 384

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy TrEMBL
Match: A0A6J1J1D4 (double-stranded RNA-binding protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482525 PE=4 SV=1)

HSP 1 Score: 681 bits (1758), Expect = 2.03e-246
Identity = 353/363 (97.25%), Postives = 359/363 (98.90%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPP VLP AILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVPIS 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+PENTVEHVTTTVNEDKEVNGAILDNVV IS
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHVTTTVNEDKEVNGAILDNVVAIS 300

Query: 301 HLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQV 360
           HLGPE RSIKPVASSPSERLPIESVPSTSEEPVGDRATG+KKRSKNKRKARKKLCMENQV
Sbjct: 301 HLGPELRSIKPVASSPSERLPIESVPSTSEEPVGDRATGTKKRSKNKRKARKKLCMENQV 360

Query: 361 ATG 363
           ATG
Sbjct: 361 ATG 363

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy TrEMBL
Match: A0A6J1J4E3 (double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482525 PE=4 SV=1)

HSP 1 Score: 673 bits (1737), Expect = 4.67e-243
Identity = 353/373 (94.64%), Postives = 359/373 (96.25%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPP VLP AILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVP-- 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+PENTVEHVTTTVNEDKEVNGAILDNVV   
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHVTTTVNEDKEVNGAILDNVVACG 300

Query: 301 --------ISHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA 360
                   ISHLGPE RSIKPVASSPSERLPIESVPSTSEEPVGDRATG+KKRSKNKRKA
Sbjct: 301 AISEICPTISHLGPELRSIKPVASSPSERLPIESVPSTSEEPVGDRATGTKKRSKNKRKA 360

Query: 361 RKKLCMENQVATG 363
           RKKLCMENQVATG
Sbjct: 361 RKKLCMENQVATG 373

[Close]

BLAST of Cp4.1LG03g05940 vs. ExPASy TrEMBL
Match: A0A6J1J9P9 (double-stranded RNA-binding protein 4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482525 PE=4 SV=1)

HSP 1 Score: 665 bits (1717), Expect = 3.33e-240
Identity = 349/369 (94.58%), Postives = 355/369 (96.21%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPP VLP AILIPS+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRP 180

Query: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240
           MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL
Sbjct: 181 MYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTL 240

Query: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTTVNEDKEVNGAILDNVVP-- 300
           AEIIASKVRLHAMMQKVKDSHPSQIQPKY+PENTVEHVTTTVNEDKEVNGAILDNVV   
Sbjct: 241 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHVTTTVNEDKEVNGAILDNVVACG 300

Query: 301 --------ISHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKA 359
                   ISHLGPE RSIKPVASSPSERLPIESVPSTSEEPVGDRATG+KKRSKNKRKA
Sbjct: 301 AISEICPTISHLGPELRSIKPVASSPSERLPIESVPSTSEEPVGDRATGTKKRSKNKRKA 360

[Close]

BLAST of Cp4.1LG03g05940 vs. TAIR 10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-23
Identity = 64/167 (38.32%), Postives = 99/167 (59.28%), Query Frame = 0


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPN 125
           S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S  
Sbjct: 3   STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP 62

Query: 126 TFRNRRAAEQDAARIALEYISKKAKDDGFVL--LHEDLMLCKSILSEYTVKMSLKRPMYT 185
            F NR+AAEQ AA +AL  ++K ++    V   +HE   LCK++L EY  KM+   P+Y 
Sbjct: 63  GFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHE-TGLCKNLLQEYAQKMNYAIPLYQ 122

Query: 186 TKQHE--GSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSL 229
            ++ E  G V  F  T+   G+ YTG  +R+KK+AE  A R A+L++
Sbjct: 123 CQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168

[Close]

BLAST of Cp4.1LG03g05940 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-15
Identity = 50/153 (32.68%), Postives = 79/153 (51.63%), Query Frame = 0


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P++++TV  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 138 ARIALEYISKKAKDDGFVL-LHEDLMLCKSILSEYTVKMSLKRPMYTT-KQHEGSVPIFQ 197
           A +AL  +S +         + ++  + K++L E   ++    P YTT +   G  P+F 
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 198 STLVFDGVVYTGDISRSKKEAEQLAARAAILSL 229
            T+   G+ +TGD +++KK+AE+ AA AA  SL
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153

[Close]

BLAST of Cp4.1LG03g05940 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-15
Identity = 61/213 (28.64%), Postives = 105/213 (49.30%), Query Frame = 0


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 138 ARIALEYISKKAKDDGFVL-LHEDLMLCKSILSEYTVKMSLKRPMYTT-KQHEGSVPIFQ 197
           A +AL  +S K         + ++  + K++L E   +  L  P+YT+ +   G +P F 
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 198 STLVFDGVVYTGDISRSKKEAEQLAARAAILSLHD-------AGNPKSQKTLAEIIASKV 257
            T+   G+ + G+ +++KK+AE+ AA AA  SL          G  K Q+ +A ++ S+ 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPLRGEEKEQEIVARVL-SRF 180

Query: 258 RLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTT 282
           R     ++VK   P+Q + + +     ++ TTT
Sbjct: 181 R----PKEVKRREPNQSRRRTVIRTIRQNTTTT 208

[Close]

BLAST of Cp4.1LG03g05940 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-15
Identity = 61/213 (28.64%), Postives = 105/213 (49.30%), Query Frame = 0


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 138 ARIALEYISKKAKDDGFVL-LHEDLMLCKSILSEYTVKMSLKRPMYTT-KQHEGSVPIFQ 197
           A +AL  +S K         + ++  + K++L E   +  L  P+YT+ +   G +P F 
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 198 STLVFDGVVYTGDISRSKKEAEQLAARAAILSLHD-------AGNPKSQKTLAEIIASKV 257
            T+   G+ + G+ +++KK+AE+ AA AA  SL          G  K Q+ +A ++ S+ 
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPLRGEEKEQEIVARVL-SRF 180

Query: 258 RLHAMMQKVKDSHPSQIQPKYLPENTVEHVTTT 282
           R     ++VK   P+Q + + +     ++ TTT
Sbjct: 181 R----PKEVKRREPNQSRRRTVIRTIRQNTTTT 208

[Close]

BLAST of Cp4.1LG03g05940 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 )

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-13
Identity = 50/176 (28.41%), Postives = 87/176 (49.43%), Query Frame = 0


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 138 ARIALEYISKKAKDDGFVL-LHEDLMLCKSILSEYTVKMSLKRPMYTT-KQHEGSVPIFQ 197
           A ++L  +S +         + ++  + K++L E   +  L  PMYT+ +      P F 
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 198 STLVFDGVVYTGDISRSKKEAEQLAARAA------ILSLHDAGNPKSQKTLAEIIA 246
            T+   G+ +TG+ +++KK+AE+ AA AA      + SL      K Q+ +A +++
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSSLDSQDEEKEQEAVARVLS 176

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g05940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0IV63	1.2e-22	33.62	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0IQN6	2.6e-22	33.62	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q6YW64	3.4e-22	31.53	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0DJA3	5.8e-22	32.23	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
O04492	7.6e-22	38.32	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE...	[more]

BLAST of Cp4.1LG03g05940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526614.1	3.83e-261	100.00	double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022935533.1	1.67e-255	97.86	double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata]	[more]
KAG6581214.1	1.34e-252	95.57	Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022935532.1	3.85e-252	95.31	double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata]	[more]
XP_022984142.1	4.19e-246	97.25	double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG03g05940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAT0	8.08e-256	97.86	double-stranded RNA-binding protein 4-like isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1F5U3	1.86e-252	95.31	double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1J1D4	2.03e-246	97.25	double-stranded RNA-binding protein 4-like isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A6J1J4E3	4.67e-243	94.64	double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1J9P9	3.33e-240	94.58	double-stranded RNA-binding protein 4-like isoform X3 OS=Cucurbita maxima OX=366...	[more]

BLAST of Cp4.1LG03g05940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09700.1	5.4e-23	38.32	dsRNA-binding domain-like superfamily protein	[more]
AT2G28380.1	1.4e-15	32.68	dsRNA-binding protein 2	[more]
AT3G26932.1	2.4e-15	28.64	dsRNA-binding protein 3	[more]
AT3G26932.2	2.4e-15	28.64	dsRNA-binding protein 3	[more]
AT5G41070.1	1.7e-13	28.41	dsRNA-binding protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 164..229 e-value: 8.2E-10 score: 48.6 coord: 79..146 e-value: 4.9E-13 score: 59.3
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 79..144 e-value: 1.3E-9 score: 38.6 coord: 165..228 e-value: 6.2E-11 score: 42.9
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 78..147 score: 11.552683
None	No IPR available	GENE3D	3.30.160.20		coord: 65..151 e-value: 8.8E-19 score: 68.9 coord: 156..233 e-value: 7.1E-18 score: 66.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 358..374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR11207:SF26	DOUBLE-STRANDED RNA-BINDING PROTEIN 4	coord: 63..351
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 161..228
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 74..145
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 63..351

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g05940.1	Cp4.1LG03g05940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016075	rRNA catabolic process
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding