Cp4.1LG03g04890 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g04890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG03: 5100314 .. 5100736 (-)
RNA-Seq Expression	Cp4.1LG03g04890
Synteny	Cp4.1LG03g04890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTTCAGGGAAGAGGAAGAGGAAGAGGAAGGAGAGTGATCGCATTGACAGCGACGACACGGAAATCGAAAAGTTCAGCGAGATCGTCGACAATTTTCGTGCTCCGTACAACTGGTTTAGGGCTAAAATCACCGGTTCTGATTCTCTAACAAATGGCCACGATCTGAACAAGAATCACAAGATTGTTCATCACGATTCGAACCGAGGCGTGGATGGTGTTTGGATGCCCTGTTTTCTTGCCGAAGATTTCGAGGAAGAGGAGGTCATTAAGTCCTGGAAAGCCAGAGCACTGCCGAGGTACCAGACGGCGGATCCAGCGGCGGCGGCGGCGGCGGCGGCATTCGAAGCGATCGATGGTGGAGGGGAGGCGAAGAAGAAGGATGATCACAAAGAGTTAGACCTTCGCCTTTCTCTTTAA

mRNA sequence

ATGGAGATTTCAGGGAAGAGGAAGAGGAAGAGGAAGGAGAGTGATCGCATTGACAGCGACGACACGGAAATCGAAAAGTTCAGCGAGATCGTCGACAATTTTCGTGCTCCGTACAACTGGTTTAGGGCTAAAATCACCGGTTCTGATTCTCTAACAAATGGCCACGATCTGAACAAGAATCACAAGATTGTTCATCACGATTCGAACCGAGGCGTGGATGGTGTTTGGATGCCCTGTTTTCTTGCCGAAGATTTCGAGGAAGAGGAGGTCATTAAGTCCTGGAAAGCCAGAGCACTGCCGAGGTACCAGACGGCGGATCCAGCGGCGGCGGCGGCGGCGGCGGCATTCGAAGCGATCGATGGTGGAGGGGAGGCGAAGAAGAAGGATGATCACAAAGAGTTAGACCTTCGCCTTTCTCTTTAA

Coding sequence (CDS)

ATGGAGATTTCAGGGAAGAGGAAGAGGAAGAGGAAGGAGAGTGATCGCATTGACAGCGACGACACGGAAATCGAAAAGTTCAGCGAGATCGTCGACAATTTTCGTGCTCCGTACAACTGGTTTAGGGCTAAAATCACCGGTTCTGATTCTCTAACAAATGGCCACGATCTGAACAAGAATCACAAGATTGTTCATCACGATTCGAACCGAGGCGTGGATGGTGTTTGGATGCCCTGTTTTCTTGCCGAAGATTTCGAGGAAGAGGAGGTCATTAAGTCCTGGAAAGCCAGAGCACTGCCGAGGTACCAGACGGCGGATCCAGCGGCGGCGGCGGCGGCGGCGGCATTCGAAGCGATCGATGGTGGAGGGGAGGCGAAGAAGAAGGATGATCACAAAGAGTTAGACCTTCGCCTTTCTCTTTAA

Protein sequence

MEISGKRKRKRKESDRIDSDDTEIEKFSEIVDNFRAPYNWFRAKITGSDSLTNGHDLNKNHKIVHHDSNRGVDGVWMPCFLAEDFEEEEVIKSWKARALPRYQTADPAAAAAAAAFEAIDGGGEAKKKDDHKELDLRLSL

Homology

[Close]

BLAST of Cp4.1LG03g04890 vs. NCBI nr
Match: KAG6581317.1 (hypothetical protein SDJN03_21319, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254 bits (650), Expect = 5.65e-85
Identity = 131/140 (93.57%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MEISGKRKRKRKESDRIDSDDTEIEKFSEIVDNFRAPYNWFRAKITGSDSLTNGHDLNKN 60
           MEISGKRKRK  ESDRIDSDDTEIEKFSEIVDNFRAPYNWFRAKITGS SLTNGHDLNKN
Sbjct: 1   MEISGKRKRK--ESDRIDSDDTEIEKFSEIVDNFRAPYNWFRAKITGSGSLTNGHDLNKN 60

Query: 61  HKIVHHDSNRGVDGVWMPCFLAEDFEEEEVIKSWKARALPRYQTADPAAAAAAAAFEAID 120
           HKIVH DSNRGVDGVWMPCFL EDFEE+EVIKSWKARALP+ QTADPAAAAAAAAFEAID
Sbjct: 61  HKIVHRDSNRGVDGVWMPCFLVEDFEEQEVIKSWKARALPKSQTADPAAAAAAAAFEAID 120

Query: 121 GGGEAKKKDDHKELDLRLSL 140
           GG EAKKKDDHKELDLRLSL
Sbjct: 121 GGEEAKKKDDHKELDLRLSL 138

[Close]

BLAST of Cp4.1LG03g04890 vs. NCBI nr
Match: KGN58537.1 (hypothetical protein Csa_002705 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 3.78e-34
Identity = 81/148 (54.73%), Postives = 101/148 (68.24%), Query Frame = 0


Query: 1   MEISGKRKRKRKESDRIDSDDTEIEKFSEIVDNFRAPYNWFRAKI-TGSDSLT-NGHDLN 60
           M+ISGKRKR    +D   +++ EI+KFSEIV+ FRAPYNWFRA++ T S + T NG D  
Sbjct: 1   MDISGKRKR----NDNNQNEEDEIQKFSEIVEKFRAPYNWFRARMSTHSAAATHNGGDRK 60

Query: 61  KNHKIVH---HDSNRGVDGVWMPCFLAEDFEEEEVIKSWKARALPRYQTADPAAAAAAAA 120
           K  K       D +   D VWMPCFL +DFEEEEVIKSWKARA+PR +TA PAA      
Sbjct: 61  KKKKKPSGSGEDEDDDDDDVWMPCFLLQDFEEEEVIKSWKARAVPRPETAGPAAE----- 120

Query: 121 FEAIDGG---GEAKKKDDHKELDLRLSL 140
           FE++DGG   GE  KK++  +L+LRLSL
Sbjct: 121 FESVDGGRVEGEKGKKEE--KLNLRLSL 137

[Close]

BLAST of Cp4.1LG03g04890 vs. NCBI nr
Match: KAG6606917.1 (hypothetical protein SDJN03_00259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (311), Expect = 1.92e-33
Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 1   MEISGKRKRKRKESDRIDSDDTEIEKFSEIVDNFRAPYNWFRAKITGSDSLTNGHDLN-- 60
           ME SGKRKRK  + +R +SD+ ++EKF EIV+ FRAPY+WFRAK++GS  + NG D    
Sbjct: 1   MEDSGKRKRKENDGNRNESDEADVEKFMEIVEKFRAPYDWFRAKMSGS--VANGEDQRMK 60

Query: 61  --KNHKIVHHDSNRGVDGVWMPCFLAEDFEEEEVIKSWKARALPRYQTADPAAAAAAAAF 120
             K  KIV  DS RG   VWMP FL EDFEEEEVIK WK+ AL + +T      A A A 
Sbjct: 61  KKKKKKIVEDDSKRG--DVWMPFFLLEDFEEEEVIKFWKSTALRKSETT-----ATATAA 120

Query: 121 EAIDGGGEAKKKDDHKELDLRLSL 140
             +DGG E  +K++++ LDLRL L
Sbjct: 121 TTMDGGSE--EKENNEGLDLRLCL 133

[Close]

BLAST of Cp4.1LG03g04890 vs. ExPASy TrEMBL
Match: A0A0A0LCY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G665100 PE=4 SV=1)

HSP 1 Score: 126 bits (316), Expect = 1.83e-34
Identity = 81/148 (54.73%), Postives = 101/148 (68.24%), Query Frame = 0


Query: 1   MEISGKRKRKRKESDRIDSDDTEIEKFSEIVDNFRAPYNWFRAKI-TGSDSLT-NGHDLN 60
           M+ISGKRKR    +D   +++ EI+KFSEIV+ FRAPYNWFRA++ T S + T NG D  
Sbjct: 1   MDISGKRKR----NDNNQNEEDEIQKFSEIVEKFRAPYNWFRARMSTHSAAATHNGGDRK 60

Query: 61  KNHKIVH---HDSNRGVDGVWMPCFLAEDFEEEEVIKSWKARALPRYQTADPAAAAAAAA 120
           K  K       D +   D VWMPCFL +DFEEEEVIKSWKARA+PR +TA PAA      
Sbjct: 61  KKKKKPSGSGEDEDDDDDDVWMPCFLLQDFEEEEVIKSWKARAVPRPETAGPAAE----- 120

Query: 121 FEAIDGG---GEAKKKDDHKELDLRLSL 140
           FE++DGG   GE  KK++  +L+LRLSL
Sbjct: 121 FESVDGGRVEGEKGKKEE--KLNLRLSL 137

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04890 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g04890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581317.1	5.65e-85	93.57	hypothetical protein SDJN03_21319, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN58537.1	3.78e-34	54.73	hypothetical protein Csa_002705 [Cucumis sativus]	[more]
KAG6606917.1	1.92e-33	52.78	hypothetical protein SDJN03_00259, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG03g04890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCY6	1.83e-34	54.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G665100 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g04890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 18..136 e-value: 1.3E-6 score: 29.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04890.1	Cp4.1LG03g04890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance