Cp4.1LG03g04870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g04870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	LysM domain-containing protein
Location	Cp4.1LG03: 5244109 .. 5246223 (+)
RNA-Seq Expression	Cp4.1LG03g04870
Synteny	Cp4.1LG03g04870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAAGTCTTCGAACTGTCGGATATTTTTTTGGGGGGGTTCTCTGAAGAAACGAGTAACGGAGAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCAAAATCTTTCGTTATTTTTCCGCGAAAATTTGGATTCTCAGTTTTTTTTTGTTTTACCTCGAAAGGCGAACAAGTTTCTTCTTTGATTTCATTTGTTTTGTTTTCCTTTTGTCTTTTCCAATTCAGGTCTAGGGTTCTTTTTTCTGTTTCTGTTCGTCTTGATTGTTGCAGTTTGTTTTTCGGGAGGATTCTTTTTTTTGGTGTTGGTTGCTGTTTGGGGTTGATTTGGATCGATTTTCAATTTTGGTTGATCCTGCGATGGATTTACTTTCTTGACGGAAATTTATTTTGATGGTGGATTTGAGAGGCGCAGATGGAAAGGGGGCGGATGAACGGGAACGGAAACGGAAACGGGGATTTCGACTATAGTTATGAGAGCAATGGCTATCATGCGTTAGATCTCGTGGATGTCTACGGAGAGAACACGCCTATTGGAAGATGCTCCGGGAAGACGTCGCAGGTTGCATCTTCTTCGAATTGTATCGTGCATCCGGTTTCTAAATTCGACACTCTTGCTGGAGTTGCAATCAAATATGGTGTCGAGGTAAACCACATTTCATAATCTCTGATGAGTTTATAACAGAAAATGGATTTCTGAATTTGCAGTAGTTTGAAATGTCCTTGACTTCTTTCAATCGTCGTTATGATGTGGAAGCAATAGAAATGATGATTTCAAAATTGTGTTTGCTTGGTATTATGATGTTGGGTGTCAGATGTTGCTTTTTATTTTTTTTAATAATTATTATTTTAAATCTATCTTTCTCACCGTCAGGTTAGAATTACTCTGTTTCCTCTTTGTCCTGGGATGAGTTCTTTAAAAACCATAGCGATGACAACTCATTCGTCCCTTGAATTTTCTGCTATGACCAAATGAGGCTTATGACGGATTTGTATTGAAAATGGAATGAATCAGAACTTATTAGTGTTTTCACCATGAGATAACCATTTGATTATTATGGGCTACATGTAGATGTTGATCAGCTCTTGTTTCCTGTTCTCCCGCTCAATACGACCTTTTCGAAGTGAGTTAAAAGGGGCGAAGCAGGAGTATCTTTTGTTGTGGGGAAAACATAGATGAAAATAAAAATTAACAAAAATTGAAAAACTGGTTTAAAATCAAACAGTTATTTTATAGGAAAATTGTAAAATTTAATGCAAAAATTAGAAATCAAAGGGTCAAAATTGTTATGTCCCAGATGTTTGAATAGAGTTTTTGAGAACTCTAGATTTAAAGAAAACTAATATGGGTTGCTCTCGAAACCTGGCTCCATGATTAGTTGGAGTTTGATATTCGGCAATTCTGATGAATATCGGCTTCCTTCTTCGGGCAGTGTGTAATCATATGATATAGAAAATTTCCCTCGAGAGCATAGACAATTCCATTCACATGTGGTCGATATTATTTGTTATTTGGTTCTTTCAATTAAAAGGTCAAAGCTCAGTTTCTTACACCCCTAAGGAAGGAAAAAAAAGAATCAAAATTAATAGATATCTTTTAGGAGGAAATTCTAATTGTTTTTCATCGTGATTCACCAGGTTGCAGATATAAAGAAGATGAACGGGCTAGTCACAGACTTTCAAATGTTTGCTCTTAAATCACTCCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGCCTATTGGAAGGCCTAAACACTTCAGGGTATGTGTTTGTTTTTTGATGTTCATCATATTGTTTCCATATAATATTGCACAAGAATAATATTGCACAAGAATGTGTTTGAGCTTTCAACAATGTGTTTTGAGTTTGATTGTAAGTCAGTAAATTGCAGAATTGTCAGTTACTGGTCATATTGGGGTTGAGATTAAGGTTGGGGTTCAATTAGTATTTCTATCTGTTAAACTATGATAGGAATGGCCTAAGCGAAGCCATTAAGAAAGTAAATGATAGCGTGGAGCCAGGGCTATTCGTTTTGCTTGGAGCCTTAGGTCTTTAATGGTTCGTCTTTATGATAGCGTGTAGCCCTGATTGTGATTGTGGATGC

mRNA sequence

TCGAAGTCTTCGAACTGTCGGATATTTTTTTGGGGGGGTTCTCTGAAGAAACGAGTAACGGAGAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCAAAATCTTTCGTTATTTTTCCGCGAAAATTTGGATTCTCAGTTTTTTTTTGTTTTACCTCGAAAGGCGAACAAGTTTCTTCTTTGATTTCATTTGTTTTGTTTTCCTTTTGTCTTTTCCAATTCAGGTCTAGGGTTCTTTTTTCTGTTTCTGTTCGTCTTGATTGTTGCAGTTTGTTTTTCGGGAGGATTCTTTTTTTTGGTGTTGGTTGCTGTTTGGGGTTGATTTGGATCGATTTTCAATTTTGGTTGATCCTGCGATGGATTTACTTTCTTGACGGAAATTTATTTTGATGGTGGATTTGAGAGGCGCAGATGGAAAGGGGGCGGATGAACGGGAACGGAAACGGAAACGGGGATTTCGACTATAGTTATGAGAGCAATGGCTATCATGCGTTAGATCTCGTGGATGTCTACGGAGAGAACACGCCTATTGGAAGATGCTCCGGGAAGACGTCGCAGGTTGCATCTTCTTCGAATTGTATCGTGCATCCGGTTTCTAAATTCGACACTCTTGCTGGAGTTGCAATCAAATATGGTGTCGAGGTTGCAGATATAAAGAAGATGAACGGGCTAGTCACAGACTTTCAAATGTTTGCTCTTAAATCACTCCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGCCTATTGGAAGGCCTAAACACTTCAGGGTATGTGTTTGTTTTTTGATGTTCATCATATTGTTTCCATATAATATTGCACAAGAATAATATTGCACAAGAATGTGTTTGAGCTTTCAACAATGTGTTTTGAGTTTGATTGTAAGTCAGTAAATTGCAGAATTGTCAGTTACTGGTCATATTGGGGTTGAGATTAAGGTTGGGGTTCAATTAGTATTTCTATCTGTTAAACTATGATAGGAATGGCCTAAGCGAAGCCATTAAGAAAGTAAATGATAGCGTGGAGCCAGGGCTATTCGTTTTGCTTGGAGCCTTAGGTCTTTAATGGTTCGTCTTTATGATAGCGTGTAGCCCTGATTGTGATTGTGGATGC

Coding sequence (CDS)

ATGGAAAGGGGGCGGATGAACGGGAACGGAAACGGAAACGGGGATTTCGACTATAGTTATGAGAGCAATGGCTATCATGCGTTAGATCTCGTGGATGTCTACGGAGAGAACACGCCTATTGGAAGATGCTCCGGGAAGACGTCGCAGGTTGCATCTTCTTCGAATTGTATCGTGCATCCGGTTTCTAAATTCGACACTCTTGCTGGAGTTGCAATCAAATATGGTGTCGAGGTTGCAGATATAAAGAAGATGAACGGGCTAGTCACAGACTTTCAAATGTTTGCTCTTAAATCACTCCAGATTCCTCTTCCTGGAAGGCATCCTCCATCTCCTTGCCTATTGGAAGGCCTAAACACTTCAGGGTATGTGTTTGTTTTTTGA

Protein sequence

MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTSGYVFVF

Homology

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy Swiss-Prot
Match: Q1JQA8 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Bos taurus OX=9913 GN=LYSMD2 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.4e-05
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 57  IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEG 116
           + H V   DTL G+A+KYGV +  IK+ N L T+  +F  K+L IP+       P L  G
Sbjct: 72  VEHRVRAGDTLQGIALKYGVSMEQIKRANKLFTNDCIFLKKTLNIPVISE---KPLLFNG 131

Query: 117 LNT 120
           LN+
Sbjct: 132 LNS 131

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy Swiss-Prot
Match: Q9D7V2 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Lysmd2 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 6.4e-05
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 57  IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEG 116
           + H V   DTL G+A+KYGV +  IK+ N L T+  +F  K+L IP+       P L  G
Sbjct: 71  VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLSIPILSE---KPLLFNG 130

Query: 117 LNT 120
           LN+
Sbjct: 131 LNS 130

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy Swiss-Prot
Match: Q8IV50 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=LYSMD2 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.3e-05
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 57  IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEG 116
           + H V   DTL G+A+KYGV +  IK+ N L T+  +F  K+L IP+       P L  G
Sbjct: 71  VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISE---KPLLFNG 130

Query: 117 LNT 120
           LN+
Sbjct: 131 LNS 130

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy Swiss-Prot
Match: Q3B7I8 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus tropicalis OX=8364 GN=lysmd2 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 42  RCSGKTSQVAS--SSNCIVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSL 101
           R  G T+ VA+  S   I H +S  DTL G+A+KYGV +  IK+ N L +   +F  KSL
Sbjct: 44  RSYGSTASVAAPLSERYIEHRLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSL 103

Query: 102 QIPL 104
            IP+
Sbjct: 104 NIPV 107

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy Swiss-Prot
Match: Q6DCC7 (LysM and putative peptidoglycan-binding domain-containing protein 4 OS=Xenopus laevis OX=8355 GN=lysmd4 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 29/93 (31.18%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 11  NGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHPVSKFDTLAGV 70
           NG  + D S E   +  ++L    GE   I     K   V      +   +++ D L  +
Sbjct: 30  NGTAEADSSSEEE-FDVMELRARGGEQQRINASREKVGNVI----LLERAITEDDNLNKL 89

Query: 71  AIKYGVEVADIKKMNGLVTDFQMFALKSLQIPL 104
           A++YG +V+DIK++N L+TD  ++ALK+++IP+
Sbjct: 90  ALQYGCKVSDIKRVNNLITDQDIYALKTIKIPV 117

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: XP_023528753.1 (uncharacterized protein LOC111791593 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251 bits (640), Expect = 2.27e-80
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP
Sbjct: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: XP_022982635.1 (uncharacterized protein LOC111481449 [Cucurbita maxima])

HSP 1 Score: 238 bits (607), Expect = 2.26e-75
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGNG  DFDYSYESNGYHALDLVDVYGENTPIGR SGKTSQVASSSNCIVHP
Sbjct: 1   MERGRMNGNGNG--DFDYSYESNGYHALDLVDVYGENTPIGRSSGKTSQVASSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 119

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: XP_022934623.1 (uncharacterized protein LOC111441757 [Cucurbita moschata])

HSP 1 Score: 235 bits (600), Expect = 2.58e-74
Identity = 117/121 (96.69%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGNG  DFDYSYESNGYHALDLVDVYGENTPIGR  GKTSQVASSSNCIVHP
Sbjct: 1   MERGRMNGNGNG--DFDYSYESNGYHALDLVDVYGENTPIGRGRGKTSQVASSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 119

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: KAG7018054.1 (hypothetical protein SDJN02_19920 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235 bits (600), Expect = 2.58e-74
Identity = 117/121 (96.69%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGNG  DFDYSYESNGYHALDLVDVYGENTPIGR  GKTSQVASSSNCIVHP
Sbjct: 1   MERGRMNGNGNG--DFDYSYESNGYHALDLVDVYGENTPIGRGCGKTSQVASSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 119

[Close]

BLAST of Cp4.1LG03g04870 vs. NCBI nr
Match: KAG6581549.1 (hypothetical protein SDJN03_21551, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235 bits (600), Expect = 2.58e-74
Identity = 117/121 (96.69%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGNG  DFDYSYESNGYHALDLVDVYGENTPIGR  GKTSQVASSSNCIVHP
Sbjct: 1   MERGRMNGNGNG--DFDYSYESNGYHALDLVDVYGENTPIGRGCGKTSQVASSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 119

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy TrEMBL
Match: A0A6J1J3A0 (uncharacterized protein LOC111481449 OS=Cucurbita maxima OX=3661 GN=LOC111481449 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 1.10e-75
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGNG  DFDYSYESNGYHALDLVDVYGENTPIGR SGKTSQVASSSNCIVHP
Sbjct: 1   MERGRMNGNGNG--DFDYSYESNGYHALDLVDVYGENTPIGRSSGKTSQVASSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 119

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy TrEMBL
Match: A0A6J1F865 (uncharacterized protein LOC111441757 OS=Cucurbita moschata OX=3662 GN=LOC111441757 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 1.25e-74
Identity = 117/121 (96.69%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGNG  DFDYSYESNGYHALDLVDVYGENTPIGR  GKTSQVASSSNCIVHP
Sbjct: 1   MERGRMNGNGNG--DFDYSYESNGYHALDLVDVYGENTPIGRGRGKTSQVASSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 119

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy TrEMBL
Match: A0A0A0LCX1 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G653440 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 3.42e-68
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSSNCIVHP 60
           MERGRMNGNGN     DYS ESNGYH+LDL DVYGENTP GR SGKTSQV+SSSNCIVHP
Sbjct: 1   MERGRMNGNGN----CDYSCESNGYHSLDLADVYGENTPDGRSSGKTSQVSSSSNCIVHP 60

Query: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTS 120
           VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT+
Sbjct: 61  VSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNTA 117

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy TrEMBL
Match: A0A5D3BYK1 (Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00160 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 1.07e-66
Identity = 110/122 (90.16%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSS-NCIVH 60
           MERGRMNGNGN     DYS ESNGYH+LDLVDVYGENTP GR SGKTSQV+SSS NCIVH
Sbjct: 1   MERGRMNGNGN----CDYSCESNGYHSLDLVDVYGENTPDGRSSGKTSQVSSSSSNCIVH 60

Query: 61  PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT 120
           PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT
Sbjct: 61  PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT 118

[Close]

BLAST of Cp4.1LG03g04870 vs. ExPASy TrEMBL
Match: A0A1S3CG46 (uncharacterized protein LOC103500354 OS=Cucumis melo OX=3656 GN=LOC103500354 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 1.07e-66
Identity = 110/122 (90.16%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCSGKTSQVASSS-NCIVH 60
           MERGRMNGNGN     DYS ESNGYH+LDLVDVYGENTP GR SGKTSQV+SSS NCIVH
Sbjct: 1   MERGRMNGNGN----CDYSCESNGYHSLDLVDVYGENTPDGRSSGKTSQVSSSSSNCIVH 60

Query: 61  PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT 120
           PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT
Sbjct: 61  PVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPPSPCLLEGLNT 118

[Close]

BLAST of Cp4.1LG03g04870 vs. TAIR 10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-26
Identity = 68/127 (53.54%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 2   ERGRMNGNGNGNGDFDYSYESNGYHALDLVDVYGENTPIGRCS---------GKTSQVAS 61
           ERGR     NG+ +F  + +  GY  +D    + E +P   CS           +S  +S
Sbjct: 4   ERGRRISGFNGSFEFS-NRKFRGYGFVDRSQGFHERSPSRSCSVSKILRITPPTSSPPSS 63

Query: 62  SSNC---IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPLPGRHPP 117
           +S C   I H VSKFDTLAG+AIKYGVEVADI K+NGLVTD QMFAL+SL+IPLPGRHPP
Sbjct: 64  ASTCAGYIEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLRIPLPGRHPP 123

[Close]

BLAST of Cp4.1LG03g04870 vs. TAIR 10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-25
Identity = 69/135 (51.11%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 1   MERGRMNGNGNGNGDFDYS--YESNGYHALDLVDVYGENTP----IGRCSGKTSQVASSS 60
           M+R R +   NG  ++      + NG+  LD ++   E +P    I R    TS    SS
Sbjct: 3   MDRERRSSGRNGTPEYSNGKFRDDNGFGFLDRLENCREKSPPRSKILRIPSPTSSPPPSS 62

Query: 61  NC-------------IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQI 117
           +              I H +SKFDTLAGVAIKYGVEVAD+KKMN LVTD QMFALKSLQI
Sbjct: 63  SSPPFHGSNSPDRGYIEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKSLQI 122

[Close]

BLAST of Cp4.1LG03g04870 vs. TAIR 10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 41.2 bits (95), Expect = 7.2e-04
Identity = 16/47 (34.04%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 57  IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPL 104
           I H + + D++  +A+KY V+V DIK++N +++D  +++   L IP+
Sbjct: 74  ISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPI 120

[Close]

BLAST of Cp4.1LG03g04870 vs. TAIR 10
Match: AT1G55000.2 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 41.2 bits (95), Expect = 7.2e-04
Identity = 16/47 (34.04%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 57  IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPL 104
           I H + + D++  +A+KY V+V DIK++N +++D  +++   L IP+
Sbjct: 74  ISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPI 120

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BLAST of Cp4.1LG03g04870 vs. TAIR 10
Match: AT1G55000.3 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 41.2 bits (95), Expect = 7.2e-04
Identity = 16/47 (34.04%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 57  IVHPVSKFDTLAGVAIKYGVEVADIKKMNGLVTDFQMFALKSLQIPL 104
           I H + + D++  +A+KY V+V DIK++N +++D  +++   L IP+
Sbjct: 74  ISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPI 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JQA8	6.4e-05	41.27	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Bos tauru...	[more]
Q9D7V2	6.4e-05	41.27	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Mus muscu...	[more]
Q8IV50	8.3e-05	41.27	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Homo sapi...	[more]
Q3B7I8	1.1e-04	43.75	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus t...	[more]
Q6DCC7	1.1e-04	31.18	LysM and putative peptidoglycan-binding domain-containing protein 4 OS=Xenopus l...	[more]

BLAST of Cp4.1LG03g04870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528753.1	2.27e-80	100.00	uncharacterized protein LOC111791593 [Cucurbita pepo subsp. pepo]	[more]
XP_022982635.1	2.26e-75	97.52	uncharacterized protein LOC111481449 [Cucurbita maxima]	[more]
XP_022934623.1	2.58e-74	96.69	uncharacterized protein LOC111441757 [Cucurbita moschata]	[more]
KAG7018054.1	2.58e-74	96.69	hypothetical protein SDJN02_19920 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6581549.1	2.58e-74	96.69	hypothetical protein SDJN03_21551, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG03g04870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3A0	1.10e-75	97.52	uncharacterized protein LOC111481449 OS=Cucurbita maxima OX=3661 GN=LOC111481449...	[more]
A0A6J1F865	1.25e-74	96.69	uncharacterized protein LOC111441757 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A0A0LCX1	3.42e-68	90.08	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G653440 PE=4 S...	[more]
A0A5D3BYK1	1.07e-66	90.16	Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucu...	[more]
A0A1S3CG46	1.07e-66	90.16	uncharacterized protein LOC103500354 OS=Cucumis melo OX=3656 GN=LOC103500354 PE=...	[more]

BLAST of Cp4.1LG03g04870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23130.1	3.9e-26	53.54	Peptidoglycan-binding LysM domain-containing protein	[more]
AT5G08200.1	1.5e-25	51.11	peptidoglycan-binding LysM domain-containing protein	[more]
AT1G55000.1	7.2e-04	34.04	peptidoglycan-binding LysM domain-containing protein	[more]
AT1G55000.2	7.2e-04	34.04	peptidoglycan-binding LysM domain-containing protein	[more]
AT1G55000.3	7.2e-04	34.04	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 58..102 e-value: 0.0014 score: 27.9
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 57..101 score: 11.402738
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 65..101 e-value: 3.50049E-6 score: 39.3909
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 43..108 e-value: 3.0E-12 score: 47.9
IPR036779	LysM domain superfamily	SUPERFAMILY	54106	LysM domain	coord: 57..102
IPR045030	LysM and putative peptidoglycan-binding domain-containing protein 1-4	PANTHER	PTHR20932	LOC443603 PROTEIN-RELATED	coord: 46..120
None	No IPR available	PANTHER	PTHR20932:SF36	PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN	coord: 46..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04870.1	Cp4.1LG03g04870.1	mRNA