Cp4.1LG03g04590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g04590
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Cellulose synthase
Location	Cp4.1LG03: 5428603 .. 5429142 (+)
RNA-Seq Expression	Cp4.1LG03g04590
Synteny	Cp4.1LG03g04590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTATAATTTTTGAAGTAATTTTTTTTTTTTTTTTTATTTGGTAATTTTGTTGGTAATTATTGATTTTTAACAGTTGAGAGTGGTAGAGGAAATTAAAGGGGGCAGCAAGTCAGCAAAGAGCTCGTGTACATCTTCCCCGACAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCACTGCCGTCCGATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGATTGGACAAGATTGAGGATAGAGTCCTGAAGGTAAACCCACTCATAAATTAAAATATTAAAATATTTTCAATTTAATTTAATTTAATTTTGTAAACAAATATTTAGTTTTTGGTGTGTTGAATTATGAACAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTCTTCAACACTGTATGACCGGGTCGGGAAAGATCTGA

mRNA sequence

ATGTGTTTGAGAGTGGTAGAGGAAATTAAAGGGGGCAGCAAGTCAGCAAAGAGCTCGTGTACATCTTCCCCGACAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCACTGCCGTCCGATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGATTGGACAAGATTGAGGATAGAGTCCTGAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTCTTCAACACTGTATGACCGGGTCGGGAAAGATCTGA

Coding sequence (CDS)

ATGTGTTTGAGAGTGGTAGAGGAAATTAAAGGGGGCAGCAAGTCAGCAAAGAGCTCGTGTACATCTTCCCCGACAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCACTGCCGTCCGATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGATTGGACAAGATTGAGGATAGAGTCCTGAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTCTTCAACACTGTATGACCGGGTCGGGAAAGATCTGA

Protein sequence

MCLRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELKGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI

Homology

[Close]

BLAST of Cp4.1LG03g04590 vs. NCBI nr
Match: XP_023528604.1 (uncharacterized protein LOC111791474 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228 bits (582), Expect = 5.87e-75
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK
Sbjct: 19  LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI 121
           GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI
Sbjct: 79  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI 137

[Close]

BLAST of Cp4.1LG03g04590 vs. NCBI nr
Match: XP_022934271.1 (uncharacterized protein LOC111441483 [Cucurbita moschata])

HSP 1 Score: 210 bits (535), Expect = 8.60e-68
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR++EEIKG SKS KSSCTSSP SGAHTSDYHTSSVDLSPRSLEK CRP+NDAVKVTELK
Sbjct: 19  LRLLEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRSLEKQCRPINDAVKVTELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI 121
           GSLLER+DKIEDRVLKLCLQVEGEIERE+EMIMVEKSRKKPKKSFKQL QHCMTGSGK+
Sbjct: 79  GSLLERMDKIEDRVLKLCLQVEGEIEREKEMIMVEKSRKKPKKSFKQLFQHCMTGSGKM 137

[Close]

BLAST of Cp4.1LG03g04590 vs. NCBI nr
Match: KAG6581574.1 (hypothetical protein SDJN03_21576, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209 bits (532), Expect = 2.47e-67
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR++EEIKG SKS KSSCTSSP SGAHTSDYHTSSVDLSPRSLEK CRP+NDAVKVTELK
Sbjct: 19  LRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRSLEKQCRPINDAVKVTELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI 121
           GSLLER+DKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQL QHCMTGS K+
Sbjct: 79  GSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLFQHCMTGSRKM 137

[Close]

BLAST of Cp4.1LG03g04590 vs. NCBI nr
Match: KAG7018080.1 (hypothetical protein SDJN02_19946 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207 bits (527), Expect = 1.43e-66
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR++EEIKG SKS KSSCTSSP SGAHTSDYHTSSVDLSPRSLEK CRP+NDAVKVTELK
Sbjct: 19  LRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRSLEKQCRPINDAVKVTELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI 121
           GSLLER+DKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQL QHCM GS K+
Sbjct: 79  GSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLFQHCMNGSRKM 137

[Close]

BLAST of Cp4.1LG03g04590 vs. NCBI nr
Match: XP_004151057.1 (uncharacterized protein LOC101205386 [Cucumis sativus] >KGN58589.1 hypothetical protein Csa_001276 [Cucumis sativus])

HSP 1 Score: 172 bits (437), Expect = 8.62e-53
Identity = 85/117 (72.65%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +EEI+G  KS KSSC S+P+SG  TSDYHTSSVDLSP+SLEKHCRP+N  VKV ELK
Sbjct: 19  LRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSG 119
           GSL+ER+D +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK+SFKQL+Q CMTG G
Sbjct: 79  GSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQG 135

[Close]

BLAST of Cp4.1LG03g04590 vs. ExPASy TrEMBL
Match: A0A6J1F1D1 (uncharacterized protein LOC111441483 OS=Cucurbita moschata OX=3662 GN=LOC111441483 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 4.17e-68
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR++EEIKG SKS KSSCTSSP SGAHTSDYHTSSVDLSPRSLEK CRP+NDAVKVTELK
Sbjct: 19  LRLLEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRSLEKQCRPINDAVKVTELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI 121
           GSLLER+DKIEDRVLKLCLQVEGEIERE+EMIMVEKSRKKPKKSFKQL QHCMTGSGK+
Sbjct: 79  GSLLERMDKIEDRVLKLCLQVEGEIEREKEMIMVEKSRKKPKKSFKQLFQHCMTGSGKM 137

[Close]

BLAST of Cp4.1LG03g04590 vs. ExPASy TrEMBL
Match: A0A0A0LCD9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 4.17e-53
Identity = 85/117 (72.65%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +EEI+G  KS KSSC S+P+SG  TSDYHTSSVDLSP+SLEKHCRP+N  VKV ELK
Sbjct: 19  LRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLLQHCMTGSG 119
           GSL+ER+D +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK+SFKQL+Q CMTG G
Sbjct: 79  GSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQG 135

[Close]

BLAST of Cp4.1LG03g04590 vs. ExPASy TrEMBL
Match: A0A5A7U299 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00740 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 2.48e-52
Identity = 86/118 (72.88%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +EEIKG +KS KSSC S+P+SG  TSDYHTSSVDLSP+SLEKHCRP+N  V+V ELK
Sbjct: 19  LRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVRVAELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVE-KSRKKPKKSFKQLLQHCMTGSG 119
           GSL+ER+D +EDRVLKLC+QVEGE+ERE++M+MV+ K +KKPKKSFKQL+Q CMTG G
Sbjct: 79  GSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKPKKSFKQLVQQCMTGQG 136

[Close]

BLAST of Cp4.1LG03g04590 vs. ExPASy TrEMBL
Match: A0A1S3CFF4 (uncharacterized protein LOC103500315 OS=Cucumis melo OX=3656 GN=LOC103500315 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 2.48e-52
Identity = 86/118 (72.88%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELK 62
           LR +EEIKG +KS KSSC S+P+SG  TSDYHTSSVDLSP+SLEKHCRP+N  V+V ELK
Sbjct: 19  LRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVRVAELK 78

Query: 63  GSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVE-KSRKKPKKSFKQLLQHCMTGSG 119
           GSL+ER+D +EDRVLKLC+QVEGE+ERE++M+MV+ K +KKPKKSFKQL+Q CMTG G
Sbjct: 79  GSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKPKKSFKQLVQQCMTGQG 136

[Close]

BLAST of Cp4.1LG03g04590 vs. ExPASy TrEMBL
Match: A0A6J1J7I6 (uncharacterized protein LOC111481961 OS=Cucurbita maxima OX=3661 GN=LOC111481961 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 2.05e-51
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 27  GAHTSDYHTSSVDLSPRSLEKHCRPMNDAVKVTELKGSLLERLDKIEDRVLKLCLQVEGE 86
           G  TSDYHTSSVDLSPRSLEKH RPMNDAVKVTELKGSLLER+DKIEDRVLKLCLQVEGE
Sbjct: 27  GPLTSDYHTSSVDLSPRSLEKHGRPMNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGE 86

Query: 87  IEREREMIMVEKSRKKPKKSFKQLLQHCMTGSGKI 121
           IEREREMIMVEKSRKKPKKSFKQL QHC+T +GKI
Sbjct: 87  IEREREMIMVEKSRKKPKKSFKQLFQHCITWTGKI 121

[Close]

BLAST of Cp4.1LG03g04590 vs. TAIR 10
Match: AT1G07985.1 (Expressed protein )

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-13
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 3   LRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDL-SPRSLEK-HCRPMNDAVKVTE 62
           +R +EE+KG   S +SS  S+P+SG        SS+DL SPRS+ K HCR M    + TE
Sbjct: 19  VRKLEEMKG--SSPRSSSPSTPSSGT-----QPSSMDLSSPRSIGKVHCRSMEQVREETE 78

Query: 63  LKGSLLERLDKIEDRVLKLCLQVEGEIEREREM-IMVEKSRKKPKK 106
            KG+LLERL+ +E++VLKLC Q E E+E ER+     +K +K PKK
Sbjct: 79  RKGTLLERLNNVEEQVLKLCSQFEEEVEEERKREDKTDKEKKTPKK 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04590 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g04590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528604.1	5.87e-75	100.00	uncharacterized protein LOC111791474 [Cucurbita pepo subsp. pepo]	[more]
XP_022934271.1	8.60e-68	90.76	uncharacterized protein LOC111441483 [Cucurbita moschata]	[more]
KAG6581574.1	2.47e-67	90.76	hypothetical protein SDJN03_21576, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018080.1	1.43e-66	89.92	hypothetical protein SDJN02_19946 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004151057.1	8.62e-53	72.65	uncharacterized protein LOC101205386 [Cucumis sativus] >KGN58589.1 hypothetical ...	[more]

BLAST of Cp4.1LG03g04590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F1D1	4.17e-68	90.76	uncharacterized protein LOC111441483 OS=Cucurbita moschata OX=3662 GN=LOC1114414...	[more]
A0A0A0LCD9	4.17e-53	72.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1	[more]
A0A5A7U299	2.48e-52	72.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CFF4	2.48e-52	72.88	uncharacterized protein LOC103500315 OS=Cucumis melo OX=3656 GN=LOC103500315 PE=...	[more]
A0A6J1J7I6	2.05e-51	91.58	uncharacterized protein LOC111481961 OS=Cucurbita maxima OX=3661 GN=LOC111481961...	[more]

BLAST of Cp4.1LG03g04590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07985.1	6.3e-13	48.11	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..39
None	No IPR available	PANTHER	PTHR34190:SF4	EXPRESSED PROTEIN	coord: 3..120
None	No IPR available	PANTHER	PTHR34190	EXPRESSED PROTEIN	coord: 3..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04590.1	Cp4.1LG03g04590.1	mRNA