Cp4.1LG03g04550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g04550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor MYB46-like
Location	Cp4.1LG03: 5474096 .. 5475837 (-)
RNA-Seq Expression	Cp4.1LG03g04550
Synteny	Cp4.1LG03g04550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATGAGAATGGAAGAGCGGTTTAGGTATGAATGTTTGGAGGGTGAAAGATCAATGGAAATTGAAAGAGAAGTGGTATGTGTTCCACATGAAGAGATGATGAACCACCCTCCATTAATGAACAATAAAAGCAGTTTTGGTCAGTATTTGGGCACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGACATGGGAAGCCATGGACACTTACAAGACAGCTTGAAGATGGGTAATAATGAATGGGATTTGGAAAGCTTCATGCAAGATATATCCTCATTGCCTCATTTCCTTTGATCTCCAACCTCTAAACCTCTACAAAATCTTCATTTATTTTACAATTCCTTTGGAAGGGGAAAACAAAAATCCCACATACACACACACATATATATATACATATATATATATATTCTTTGTCCCTCATTTCTTCATATATATATATATATATATTTCCCCATATATTATATGATTTCTTATCTGTCAATAAAACCCCACAAAATAAAAGAATGAACAGCTGAGGGAGTTAGAGGTGGGAAGGTAGATTGAAGATAAAGCAGTGTTTTGCAGTGCAAAAAAAAAGGGCTTCTGTTCTACAAATCCCAAGTTGAGAGGCAACTTTTCGTAAGTTTGTGTACCTTCAAAACATGGTGTTTTGTTAGCAGCAAAGGGTTTGGATCATTTGTTGTTTTTGTCATTTATGTGTACAAAAGCATATCAAGACATTTCTTTCCTTGATAAGACAATATTGTTTATATATTCATGTTTTAAACCCACATAATGTGTTACAATTCAGCTACTTTATTTCCTTATCAAGTAAACATGCATCCAATATATTGTTAAGAACATATGTACATAACATTATGAGAGAGAGTCAACATTTTGATCCTTGTTTTTAAAGTTATAGCTTTTGATCCTTGTTTTTAAAGTTATAGCTTAAATAAAATCACGACAAAGTAACATAAAACTCGAAAAGAACAACAAATGGGTAAGGAGGAGAGGAGAAGGGTGTATGGACCTTCAACCCAACCCGAAAACGAGCAAGAGATTTGAGTTAAAAAAGAGATAACTAATATTTTAACCATGCTCATTTGAAAATAACGTTAAGAATTAAGCTTACCTTACAAGTTAATGGATACAAAAAGTAGGTGAAAATATTATTTTAATCCTTGTCTAACTTTAGTCAGAATATTTTACCATTAAATTATTATTGATATATATTTTTTTAAAATAGTATGTTTATATTTTTCTTCTCAATTTTGGACATTACTTCACCCATATCAAAAAATGATCTTAAAAAAATCCGTTTAAGGTTTGTTGAAACTTTTATTCACATTTATGAGAGAATAAGAACAAAATATACTAAGAAATCGTCAAACGCAATAGGTATGTATGTATATGTATCTATATATATATTCAATAAAAAGTAGTCAATATAGCATTGAGATGTTGCACATTATGTGTTTTTAGAATTCAACCAATAGTTGCCCGTGCGTCTCAACACTACAACTTTTGTAGCAAAGAGTCTACCATCTTCGCAATGCTTTTCACACTGTGTTGATGTTGTTCTCTCAGGTCCATTGGCTAATCTAGCTCCACAAGTTAAACAATCTCCGACATGGACACAAGACAACGATCTTGTCTTCCACTGCAACAAGGTCCAAGGTTATGCTCGTGTTTCAACAATTATCTTTGATATTTTTGATAGACTCAAAGATTGTCTCTTACCAATTCATTGA

mRNA sequence

ATGGGAATGAGAATGGAAGAGCGGTTTAGGTATGAATGTTTGGAGGGTGAAAGATCAATGGAAATTGAAAGAGAAGTGGTATGTGTTCCACATGAAGAGATGATGAACCACCCTCCATTAATGAACAATAAAAGCAGTTTTGGTCAGTATTTGGGCACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGACATGGGAAGCCATGGACACTTACAAGACAGCTTGAAGATGGGTCCATTGGCTAATCTAGCTCCACAAGTTAAACAATCTCCGACATGGACACAAGACAACGATCTTGTCTTCCACTGCAACAAGGTCCAAGGTTATGCTCGTGTTTCAACAATTATCTTTGATATTTTTGATAGACTCAAAGATTGTCTCTTACCAATTCATTGA

Coding sequence (CDS)

ATGGGAATGAGAATGGAAGAGCGGTTTAGGTATGAATGTTTGGAGGGTGAAAGATCAATGGAAATTGAAAGAGAAGTGGTATGTGTTCCACATGAAGAGATGATGAACCACCCTCCATTAATGAACAATAAAAGCAGTTTTGGTCAGTATTTGGGCACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGACATGGGAAGCCATGGACACTTACAAGACAGCTTGAAGATGGGTCCATTGGCTAATCTAGCTCCACAAGTTAAACAATCTCCGACATGGACACAAGACAACGATCTTGTCTTCCACTGCAACAAGGTCCAAGGTTATGCTCGTGTTTCAACAATTATCTTTGATATTTTTGATAGACTCAAAGATTGTCTCTTACCAATTCATTGA

Protein sequence

MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNVEEMFGDMGSHGHLQDSLKMGPLANLAPQVKQSPTWTQDNDLVFHCNKVQGYARVSTIIFDIFDRLKDCLLPIH

Homology

[Close]

BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match: XP_023527101.1 (transcription factor MYB46-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167 bits (423), Expect = 3.48e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV
Sbjct: 223 MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 282

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHGHLQDSLKMG
Sbjct: 283 EEMFGDMGSHGHLQDSLKMG 302

[Close]

BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match: KAG6581578.1 (Transcription factor MYB46, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (408), Expect = 6.51e-46
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY CLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQY+GTNEQNL+V
Sbjct: 225 MGMRMEERFRYGCLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYVGTNEQNLDV 284

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHGHLQDSLKMG
Sbjct: 285 EEMFGDMGSHGHLQDSLKMG 304

[Close]

BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match: XP_022934357.1 (myb-related protein 305-like [Cucurbita moschata])

HSP 1 Score: 161 bits (408), Expect = 6.67e-46
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY CLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQY+GTNEQNL+V
Sbjct: 226 MGMRMEERFRYGCLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYVGTNEQNLDV 285

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHGHLQDSLKMG
Sbjct: 286 EEMFGDMGSHGHLQDSLKMG 305

[Close]

BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match: XP_022983998.1 (transcription factor MYB46-like [Cucurbita maxima])

HSP 1 Score: 157 bits (397), Expect = 2.62e-44
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY  LEGERSMEIEREVVC PHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV
Sbjct: 221 MGMRMEERFRYGGLEGERSMEIEREVVCGPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 280

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHGHLQDSLKMG
Sbjct: 281 EEMFGDMGSHGHLQDSLKMG 300

[Close]

BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match: XP_008461794.1 (PREDICTED: transcription factor MYB46-like [Cucumis melo] >KAA0048349.1 transcription factor MYB46-like [Cucumis melo var. makuwa] >TYK01115.1 transcription factor MYB46-like [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 9.00e-38
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY  LE +RSME+EREV+CVPHEEM NHPPLMNN+SSF QYLGTNEQNLNV
Sbjct: 218 MGMRMEERFRYGSLEAQRSMELEREVLCVPHEEM-NHPPLMNNRSSFDQYLGTNEQNLNV 277

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHG LQ+SLKMG
Sbjct: 278 EEMFGDMGSHGQLQESLKMG 296

[Close]

BLAST of Cp4.1LG03g04550 vs. ExPASy TrEMBL
Match: A0A6J1F2I1 (myb-related protein 305-like OS=Cucurbita moschata OX=3662 GN=LOC111441550 PE=4 SV=1)

HSP 1 Score: 161 bits (408), Expect = 3.23e-46
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY CLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQY+GTNEQNL+V
Sbjct: 226 MGMRMEERFRYGCLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYVGTNEQNLDV 285

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHGHLQDSLKMG
Sbjct: 286 EEMFGDMGSHGHLQDSLKMG 305

[Close]

BLAST of Cp4.1LG03g04550 vs. ExPASy TrEMBL
Match: A0A6J1J9A9 (transcription factor MYB46-like OS=Cucurbita maxima OX=3661 GN=LOC111482449 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 1.27e-44
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY  LEGERSMEIEREVVC PHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV
Sbjct: 221 MGMRMEERFRYGGLEGERSMEIEREVVCGPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 280

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHGHLQDSLKMG
Sbjct: 281 EEMFGDMGSHGHLQDSLKMG 300

[Close]

BLAST of Cp4.1LG03g04550 vs. ExPASy TrEMBL
Match: A0A5D3BPM7 (Transcription factor MYB46-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00120 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 4.36e-38
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY  LE +RSME+EREV+CVPHEEM NHPPLMNN+SSF QYLGTNEQNLNV
Sbjct: 218 MGMRMEERFRYGSLEAQRSMELEREVLCVPHEEM-NHPPLMNNRSSFDQYLGTNEQNLNV 277

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHG LQ+SLKMG
Sbjct: 278 EEMFGDMGSHGQLQESLKMG 296

[Close]

BLAST of Cp4.1LG03g04550 vs. ExPASy TrEMBL
Match: A0A1S3CFJ0 (transcription factor MYB46-like OS=Cucumis melo OX=3656 GN=LOC103500311 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 4.36e-38
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY  LE +RSME+EREV+CVPHEEM NHPPLMNN+SSF QYLGTNEQNLNV
Sbjct: 218 MGMRMEERFRYGSLEAQRSMELEREVLCVPHEEM-NHPPLMNNRSSFDQYLGTNEQNLNV 277

Query: 61  EEMFGDMGSHGHLQDSLKMG 80
           EEMFGDMGSHG LQ+SLKMG
Sbjct: 278 EEMFGDMGSHGQLQESLKMG 296

[Close]

BLAST of Cp4.1LG03g04550 vs. ExPASy TrEMBL
Match: A0A0A0L9U4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G696880 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 7.01e-38
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MGMR-MEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLN 60
           MGMR MEERFRY  LE +RSME+EREV+CVPHEEM NHPPLMNN+SSF QYLGTNEQNLN
Sbjct: 77  MGMRSMEERFRYGSLEAQRSMELEREVLCVPHEEM-NHPPLMNNRSSFDQYLGTNEQNLN 136

Query: 61  VEEMFGDMGSHGHLQDSLKMG 80
           VEEMFGDMGSHG LQ+SLKMG
Sbjct: 137 VEEMFGDMGSHGQLQESLKMG 156

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04550 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g04550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527101.1	3.48e-48	100.00	transcription factor MYB46-like [Cucurbita pepo subsp. pepo]	[more]
KAG6581578.1	6.51e-46	96.25	Transcription factor MYB46, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934357.1	6.67e-46	96.25	myb-related protein 305-like [Cucurbita moschata]	[more]
XP_022983998.1	2.62e-44	96.25	transcription factor MYB46-like [Cucurbita maxima]	[more]
XP_008461794.1	9.00e-38	86.25	PREDICTED: transcription factor MYB46-like [Cucumis melo] >KAA0048349.1 transcri...	[more]

BLAST of Cp4.1LG03g04550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F2I1	3.23e-46	96.25	myb-related protein 305-like OS=Cucurbita moschata OX=3662 GN=LOC111441550 PE=4 ...	[more]
A0A6J1J9A9	1.27e-44	96.25	transcription factor MYB46-like OS=Cucurbita maxima OX=3661 GN=LOC111482449 PE=4...	[more]
A0A5D3BPM7	4.36e-38	86.25	Transcription factor MYB46-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CFJ0	4.36e-38	86.25	transcription factor MYB46-like OS=Cucumis melo OX=3656 GN=LOC103500311 PE=4 SV=...	[more]
A0A0A0L9U4	7.01e-38	85.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G696880 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g04550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04550.1	Cp4.1LG03g04550.1	mRNA